Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032324.1

Orthogroup ID

OG0007705

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3225

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032324.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 991 bp

atctgctcattctttaccctttgcaactgttgaagccgaagagatttcgggttcactgcctgctgaagtacataacttggtgaagggtaaatggacgaaatcttctacatggaacactattgtggatccattaaacggggaaccgttcattaaagttgctgaaattgatgaaacaggaattcagccctttgtggagagcttgtccaagtgccccaaacatggtcttcataatccgttcaaatcaccagagaggtatcttttgtacggagacatatctgcaaaggcagctaccatgctttctctgccaaaggttgctgatttctttacaaggttaattcaaagggttgctccaaagagctaccagcaggcctatgctgaagtttatgtaactcaaaagtttctggagaatttctctggtgatcaggtccgcttccttgcaaggtctttcggggtgcccggaaatcatcttggccagcaaagtaatggttaccgttggccttacggtcctgttgcagtaattactcccttcaattttccactagaaattcccgtacttcagttgatgggtgcactctatatgggtaacaaaccaattctaaaagtggatagcaaggtaagccttgttatggaccaaatgatgaggctgcttcattactgtgggttaccagtagaggatgttgacttcatcaattctgatgggaagacaatgaacaaactattattggaggcaaatccacgaatgaccctcttcaccggtagctcaagagtagcagagaagttggctgctgacctgaagggacgtgttaaattagaagatgcaggatttgactggaagatattagggcctgacgttcgtgaggaggactatgttgcgtgggtctgtgatcaggatgcatatgcatgcagtggccaaaagtgctctgcacagtcaattctcttcatgcatgaggtaaggttctcctctgtattctttcctaagcttatattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006560 GO:0006562 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010133 GO:0016054 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0055114 GO:0071704 GO:0072593 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00250 ko00330 ko01100 map00250 map00330 map01100

Pfam Domains

Protein Families

Aldedh

Protein Analysis

329

Amino Acids

36.78

Weight (kDa)

6.39

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62530
fragaria_vesca	FvH4_5g15350 FvH4_5g15350 FvH4_5g15350 FvH4_5g15350 FvH4_5g15350
malus_domestica	MD06G1189000.v1.1 MD14G1196000.v1.1
prunus_persica	Prupe.5G187700_v2.0.a1 Prupe.5G187700_v2.0.a1
pyrus_communis	pycom06g16790 pycom14g16270
rosa_chinensis	RchiOBHm_Chr7g0180721
rosa_laevigata	RLG00000005237
rosa_multiflora	Rmu_co8325821.1_g000001 Rmu_sc0007457.1_g000024 Rmu_sc0032324.1_g000001 Rmu_sc0042569.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272620
rosa_rugosa	Rorug06G0435200
rosa_samantha	Rh7AG036900 Rh7BG036700 Rh7DG036900
rosa_wichuraiana	Rw7G003050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	2 cut(s)	120, 133
AcoI	YGGCCR	2 cut(s)	470, 908
AcsI	RAATTY	3 cut(s)	178, 407, 544
AcuI	CTGAAG	4 cut(s)	85, 397, 540, 813
AfaI	GTAC	3 cut(s)	70, 264, 553
AfiI	CCNNNNNNNGG	3 cut(s)	135, 219, 626
AflIII	ACRYGT	1 cut(s)	800
AgeI	ACCGGT	1 cut(s)	753
AgsI	TTSAA	4 cut(s)	33, 239, 339, 530
AjiI	CACGTC	1 cut(s)	801
AleI	CACNNNNGTG	1 cut(s)	120
AluBI	AGCT	5 cut(s)	199, 288, 358, 760, 980
AluI	AGCT	5 cut(s)	199, 288, 358, 760, 980
Alw21I	GWGCWC	2 cut(s)	572, 921
Alw26I	GTCTC	1 cut(s)	262
Alw44I	GTGCAC	1 cut(s)	568
AlwI	GGATC	2 cut(s)	120, 133
AoxI	GGCC	5 cut(s)	367, 470, 495, 843, 908
ApaLI	GTGCAC	1 cut(s)	568
ApeKI	GCWGC	3 cut(s)	285, 644, 783
ApoI	RAATTY	3 cut(s)	178, 407, 544
AsiGI	ACCGGT	1 cut(s)	753
AspS9I	GGNCC	4 cut(s)	425, 504, 629, 843
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	4 cut(s)	92, 235, 429, 743
AvaII	GGWCC	3 cut(s)	425, 504, 629
BaeGI	GKGCMC	3 cut(s)	213, 457, 572
BalI	TGGCCA	2 cut(s)	472, 910
BamHI	GGATCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	452
BbsI	GAAGAC	2 cut(s)	216, 708
Bbv12I	GWGCWC	2 cut(s)	572, 921
BbvI	GCAGC	3 cut(s)	297, 631, 770
BccI	CCATC	2 cut(s)	557, 690
BclI	TGATCA	2 cut(s)	419, 884
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	540
BisI	GCNGC	3 cut(s)	286, 645, 784
BlsI	GCNGC	3 cut(s)	287, 646, 785
Bme1390I	CCNGG	1 cut(s)	457
Bme18I	GGWCC	3 cut(s)	425, 504, 629
BmgBI	CACGTC	1 cut(s)	801
BmgT120I	GGNCC	4 cut(s)	425, 504, 629, 843
BmiI	GGNNCC	3 cut(s)	127, 142, 454
BmrFI	CCNGG	1 cut(s)	457
BmsI	GCATC	2 cut(s)	806, 881
BpiI	GAAGAC	2 cut(s)	216, 708
BplI	GAGNNNNNCTC	2 cut(s)	396, 428
BpmI	CTGGAG	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	976
BpuEI	CTTGAG	1 cut(s)	746
BpuMI	CCSGG	1 cut(s)	457
BsaWI	WCCGGW	1 cut(s)	753
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 219, 626
Bse118I	RCCGGY	1 cut(s)	753
Bse1I	ACTGG	2 cut(s)	666, 834
BseGI	GGATG	2 cut(s)	680, 896
BseLI	CCNNNNNNNGG	3 cut(s)	135, 219, 626
BseNI	ACTGG	2 cut(s)	666, 834
BseRI	GAGGAG	2 cut(s)	873, 950
BseSI	GKGCMC	3 cut(s)	213, 457, 572
BseXI	GCAGC	3 cut(s)	297, 631, 770
BsgI	GTGCAG	1 cut(s)	907
BshFI	GGCC	5 cut(s)	369, 472, 497, 845, 910
BshNI	GGYRCC	1 cut(s)	452
BshTI	ACCGGT	1 cut(s)	753
BsiHKAI	GWGCWC	2 cut(s)	572, 921
BsiSI	CCGG	2 cut(s)	457, 754
BslFI	GGGAC	1 cut(s)	811
BslI	CCNNNNNNNGG	3 cut(s)	135, 219, 626
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	811
BsnI	GGCC	5 cut(s)	369, 472, 497, 845, 910
Bsp1286I	GDGCHC	4 cut(s)	213, 457, 572, 921
Bsp143I	GATC	3 cut(s)	125, 419, 884
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	5 cut(s)	369, 472, 497, 845, 910
BspLI	GGNNCC	3 cut(s)	127, 142, 454
BspPI	GGATC	2 cut(s)	120, 133
BspT107I	GGYRCC	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	753
BsrI	ACTGG	2 cut(s)	666, 834
BssAI	RCCGGY	1 cut(s)	753
BssMI	GATC	3 cut(s)	125, 419, 884
Bst4CI	ACNGT	6 cut(s)	29, 145, 492, 504, 657, 928
Bst6I	CTCTTC	3 cut(s)	34, 753, 942
BstC8I	GCNNGC	4 cut(s)	61, 367, 474, 902
BstDEI	CTNAG	1 cut(s)	976
BstEII	GGTNACC	2 cut(s)	486, 661
BstF5I	GGATG	2 cut(s)	680, 896
BstKTI	GATC	3 cut(s)	128, 422, 887
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	3 cut(s)	125, 419, 884
BstMWI	GCNNNNNNNGC	4 cut(s)	285, 302, 616, 916
BstNSI	RCATGY	1 cut(s)	904
BstPI	GGTNACC	2 cut(s)	486, 661
BstSCI	CCNGG	1 cut(s)	455
BstSLI	GKGCMC	3 cut(s)	213, 457, 572
BstV1I	GCAGC	3 cut(s)	297, 631, 770
BstV2I	GAAGAC	2 cut(s)	216, 708
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	5 cut(s)	369, 472, 497, 845, 910
BtrI	CACGTC	1 cut(s)	801
BtsCI	GGATG	2 cut(s)	680, 896
BtsI	GCAGTG	2 cut(s)	54, 911
BtsIMutI	CAGTG	2 cut(s)	54, 911
Cac8I	GCNNGC	4 cut(s)	61, 367, 474, 902
Cfr10I	RCCGGY	1 cut(s)	753
Cfr13I	GGNCC	4 cut(s)	425, 504, 629, 843
Csp6I	GTAC	3 cut(s)	69, 263, 552
CspAI	ACCGGT	1 cut(s)	753
CviAII	CATG	6 cut(s)	109, 219, 293, 901, 941, 945
CviQI	GTAC	3 cut(s)	69, 263, 552
DdeI	CTNAG	1 cut(s)	976
DpnI	GATC	3 cut(s)	127, 421, 886
DpnII	GATC	3 cut(s)	125, 419, 884
EaeI	YGGCCR	2 cut(s)	470, 908
Eam1104I	CTCTTC	3 cut(s)	34, 753, 942
EarI	CTCTTC	3 cut(s)	34, 753, 942
Eco147I	AGGCCT	1 cut(s)	369
Eco47I	GGWCC	3 cut(s)	425, 504, 629
Eco57I	CTGAAG	4 cut(s)	85, 397, 540, 813
Eco91I	GGTNACC	2 cut(s)	486, 661
EcoO109I	RGGNCCY	1 cut(s)	843
EcoO65I	GGTNACC	2 cut(s)	486, 661
EcoRI	GAATTC	1 cut(s)	178
EcoT22I	ATGCAT	3 cut(s)	896, 902, 946
FaeI	CATG	6 cut(s)	112, 222, 296, 904, 944, 948
FaqI	GGGAC	1 cut(s)	811
FatI	CATG	6 cut(s)	108, 218, 292, 900, 940, 944
FauNDI	CATATG	1 cut(s)	896
FbaI	TGATCA	2 cut(s)	419, 884
Fnu4HI	GCNGC	3 cut(s)	286, 645, 784
FokI	GGATG	2 cut(s)	687, 903
Fsp4HI	GCNGC	3 cut(s)	286, 645, 784
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	3 cut(s)	286, 645, 784
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	5 cut(s)	369, 472, 497, 845, 910
HapII	CCGG	2 cut(s)	457, 754
Hin1II	CATG	6 cut(s)	112, 222, 296, 904, 944, 948
HincII	GTYRAC	1 cut(s)	680
HindII	GTYRAC	1 cut(s)	680
HindIII	AAGCTT	1 cut(s)	978
HpaII	CCGG	2 cut(s)	457, 754
HphI	GGTGA	4 cut(s)	92, 235, 429, 743
Hpy166II	GTNNAC	3 cut(s)	54, 570, 680
Hpy188I	TCNGA	1 cut(s)	695
Hpy188III	TCNNGA	4 cut(s)	402, 763, 855, 888
Hpy8I	GTNNAC	3 cut(s)	54, 570, 680
HpyAV	CCTTC	3 cut(s)	77, 536, 788
HpyCH4III	ACNGT	6 cut(s)	29, 145, 492, 504, 657, 928
HpyCH4IV	ACGT	2 cut(s)	800, 850
HpyF10VI	GCNNNNNNNGC	4 cut(s)	285, 302, 616, 916
HpyF3I	CTNAG	1 cut(s)	976
HpySE526I	ACGT	2 cut(s)	800, 850
Hsp92II	CATG	6 cut(s)	112, 222, 296, 904, 944, 948
Ksp22I	TGATCA	2 cut(s)	419, 884
Kzo9I	GATC	3 cut(s)	125, 419, 884
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	3 cut(s)	297, 631, 770
LweI	GCATC	2 cut(s)	806, 881
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	2 cut(s)	800, 850
MaeIII	GTNAC	4 cut(s)	386, 486, 582, 661
MalI	GATC	3 cut(s)	127, 421, 886
MboI	GATC	3 cut(s)	125, 419, 884
MboII	GAAGA	8 cut(s)	51, 94, 216, 713, 740, 825, 845, 929
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	4 cut(s)	213, 457, 572, 921
MlsI	TGGCCA	2 cut(s)	472, 910
MluNI	TGGCCA	2 cut(s)	472, 910
MnlI	CCTC	9 cut(s)	244, 634, 665, 719, 756, 851, 854, 941, 971
Mox20I	TGGCCA	2 cut(s)	472, 910
Mph1103I	ATGCAT	3 cut(s)	896, 902, 946
MscI	TGGCCA	2 cut(s)	472, 910
MseI	TTAA	4 cut(s)	132, 151, 333, 805
MslI	CAYNNNNRTG	3 cut(s)	120, 655, 899
Msp20I	TGGCCA	2 cut(s)	472, 910
MspI	CCGG	2 cut(s)	457, 754
MspR9I	CCNGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	4 cut(s)	285, 302, 616, 916
NciI	CCSGG	1 cut(s)	457
NdeI	CATATG	1 cut(s)	896
NdeII	GATC	3 cut(s)	125, 419, 884
NlaIII	CATG	6 cut(s)	112, 222, 296, 904, 944, 948
NlaIV	GGNNCC	3 cut(s)	127, 142, 454
NsiI	ATGCAT	3 cut(s)	896, 902, 946
NspI	RCATGY	1 cut(s)	904
OliI	CACNNNNGTG	1 cut(s)	120
PaeI	GCATGC	1 cut(s)	904
PceI	AGGCCT	1 cut(s)	369
PinAI	ACCGGT	1 cut(s)	753
PkrI	GCNGC	3 cut(s)	287, 646, 785
PspEI	GGTNACC	2 cut(s)	486, 661
PspN4I	GGNNCC	3 cut(s)	127, 142, 454
PspPI	GGNCC	4 cut(s)	425, 504, 629, 843
PsuI	RGATCY	1 cut(s)	125
RsaI	GTAC	3 cut(s)	70, 264, 553
RsaNI	GTAC	3 cut(s)	69, 263, 552
RseI	CAYNNNNRTG	3 cut(s)	120, 655, 899
SaqAI	TTAA	4 cut(s)	132, 151, 333, 805
SatI	GCNGC	3 cut(s)	286, 645, 784
Sau3AI	GATC	3 cut(s)	125, 419, 884
Sau96I	GGNCC	4 cut(s)	425, 504, 629, 843
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	4 cut(s)	213, 457, 572, 921
SfaNI	GCATC	2 cut(s)	806, 881
SinI	GGWCC	3 cut(s)	425, 504, 629
SmiMI	CAYNNNNRTG	3 cut(s)	120, 655, 899
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
SphI	GCATGC	1 cut(s)	904
SseBI	AGGCCT	1 cut(s)	369
SsiI	CCGC	1 cut(s)	428
SspMI	CTAG	1 cut(s)	540
StuI	AGGCCT	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	455
TaaI	ACNGT	6 cut(s)	29, 145, 492, 504, 657, 928
TaiI	ACGT	2 cut(s)	803, 853
TatI	WGTACW	1 cut(s)	68
Tru1I	TTAA	4 cut(s)	132, 151, 333, 805
Tru9I	TTAA	4 cut(s)	132, 151, 333, 805
TscAI	CASTG	2 cut(s)	61, 911
TseI	GCWGC	3 cut(s)	285, 644, 783
TspDTI	ATGAA	7 cut(s)	137, 184, 216, 639, 674, 723, 929
TspGWI	ACGGA	2 cut(s)	223, 280
TspRI	CASTG	2 cut(s)	61, 911
VneI	GTGCAC	1 cut(s)	568
VpaK11BI	GGWCC	3 cut(s)	425, 504, 629
XapI	RAATTY	3 cut(s)	178, 407, 544
XceI	RCATGY	1 cut(s)	904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	480
XspI	CTAG	1 cut(s)	540
Zsp2I	ATGCAT	3 cut(s)	896, 902, 946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.