Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007457.1

Orthogroup ID

OG0007705

Physical Location & Seq

Genomic Coordinates Forward (+)

124439 .. 127084

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007457.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgaatatgattctggctagcagagaattaagaaccagagtgcccaaaacagctttgagctggtttagttcttttaatctatcaagatctgctcattctttaccctttgcaactgttgaagccgaagagatttcgggttcactgcctgctgaagtacataacttggtgaagggtaaatggacgaaatcttctacatggaacactattgtggatccattaaacggggaaccgttcattaaagttgctgaaattgatgaaacaggaattcagccctttgtggagagcttgtccaagtgccccaaacatggtcttcataatccgttcaaatcaccagagaggtatcttttgtacggagacatatctgcaaaggcagctaccatgctttctctgccaaaggttgctgatttctttacaaggttaattcaaagggttgctccaaagagctaccagcaggcctatgctgaagtttatgtaactcaaaagtttctggagaatttctctggtgatcaggtccgcttccttgcaaggtctttcggggtgcccggaaatcatcttggccagcaaagtaatggttaccgttggccttacggtcctgttgcagtaattactcccttcaattttccactagaaattcccgtacttcagttgatgggtgcactctatatgggtaacaaaccaattctaaaagtggatagcaaggtatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006560 GO:0006562 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010133 GO:0016054 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0055114 GO:0071704 GO:0072593 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00250 ko00330 ko01100 map00250 map00330 map01100

Pfam Domains

Protein Families

Aldedh

Protein Analysis

235

Amino Acids

26.33

Weight (kDa)

9.34

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62530
fragaria_vesca	FvH4_5g15350 FvH4_5g15350 FvH4_5g15350 FvH4_5g15350 FvH4_5g15350
malus_domestica	MD06G1189000.v1.1 MD14G1196000.v1.1
prunus_persica	Prupe.5G187700_v2.0.a1 Prupe.5G187700_v2.0.a1
pyrus_communis	pycom06g16790 pycom14g16270
rosa_chinensis	RchiOBHm_Chr7g0180721
rosa_laevigata	RLG00000005237
rosa_multiflora	Rmu_co8325821.1_g000001 Rmu_sc0007457.1_g000024 Rmu_sc0032324.1_g000001 Rmu_sc0042569.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272620
rosa_rugosa	Rorug06G0435200
rosa_samantha	Rh7AG036900 Rh7BG036700 Rh7DG036900
rosa_wichuraiana	Rw7G003050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	702
AciI	CCGC	1 cut(s)	514
AclWI	GGATC	2 cut(s)	206, 219
AcoI	YGGCCR	1 cut(s)	556
AcsI	RAATTY	3 cut(s)	264, 493, 630
AcuI	CTGAAG	3 cut(s)	171, 483, 626
AfaI	GTAC	3 cut(s)	156, 350, 639
AfiI	CCNNNNNNNGG	2 cut(s)	221, 305
AgsI	TTSAA	4 cut(s)	119, 325, 425, 616
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	5 cut(s)	53, 60, 285, 374, 444
AluI	AGCT	5 cut(s)	53, 60, 285, 374, 444
Alw21I	GWGCWC	1 cut(s)	658
Alw26I	GTCTC	1 cut(s)	348
Alw44I	GTGCAC	1 cut(s)	654
AlwI	GGATC	2 cut(s)	206, 219
AoxI	GGCC	3 cut(s)	453, 556, 581
ApaLI	GTGCAC	1 cut(s)	654
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	3 cut(s)	264, 493, 630
AspS9I	GGNCC	2 cut(s)	511, 590
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	3 cut(s)	178, 321, 515
AsuNHI	GCTAGC	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	511, 590
BaeGI	GKGCMC	4 cut(s)	45, 299, 543, 658
BalI	TGGCCA	1 cut(s)	558
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	538
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	1 cut(s)	643
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	3 cut(s)	18, 626, 706
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	2 cut(s)	511, 590
BmgT120I	GGNCC	2 cut(s)	511, 590
BmiI	GGNNCC	3 cut(s)	213, 228, 540
BmrFI	CCNGG	1 cut(s)	543
BmtI	GCTAGC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	302
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
BpmI	CTGGAG	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	543
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 305
BseLI	CCNNNNNNNGG	2 cut(s)	221, 305
BseSI	GKGCMC	4 cut(s)	45, 299, 543, 658
BseXI	GCAGC	1 cut(s)	383
BshFI	GGCC	3 cut(s)	455, 558, 583
BshNI	GGYRCC	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	658
BsiSI	CCGG	1 cut(s)	543
BslI	CCNNNNNNNGG	2 cut(s)	221, 305
BsmAI	GTCTC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	455, 558, 583
Bsp1286I	GDGCHC	4 cut(s)	45, 299, 543, 658
Bsp143I	GATC	3 cut(s)	86, 211, 505
BspACI	CCGC	1 cut(s)	514
BspANI	GGCC	3 cut(s)	455, 558, 583
BspLI	GGNNCC	3 cut(s)	213, 228, 540
BspOI	GCTAGC	1 cut(s)	21
BspPI	GGATC	2 cut(s)	206, 219
BspT107I	GGYRCC	1 cut(s)	538
BssMI	GATC	3 cut(s)	86, 211, 505
BssNAI	GTATAC	1 cut(s)	703
Bst1107I	GTATAC	1 cut(s)	703
Bst4CI	ACNGT	4 cut(s)	115, 231, 578, 590
Bst6I	CTCTTC	1 cut(s)	120
BstC8I	GCNNGC	4 cut(s)	19, 147, 453, 560
BstEII	GGTNACC	1 cut(s)	572
BstKTI	GATC	3 cut(s)	89, 214, 508
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	3 cut(s)	86, 211, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 388
BstPI	GGTNACC	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	541
BstSLI	GKGCMC	4 cut(s)	45, 299, 543, 658
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	2 cut(s)	86, 211
BstYI	RGATCY	2 cut(s)	86, 211
BstZ17I	GTATAC	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	455, 558, 583
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	4 cut(s)	19, 147, 453, 560
Cfr13I	GGNCC	2 cut(s)	511, 590
Csp6I	GTAC	3 cut(s)	155, 349, 638
CviAII	CATG	3 cut(s)	195, 305, 379
CviQI	GTAC	3 cut(s)	155, 349, 638
DpnI	GATC	3 cut(s)	88, 213, 507
DpnII	GATC	3 cut(s)	86, 211, 505
EaeI	YGGCCR	1 cut(s)	556
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	455
Eco47I	GGWCC	2 cut(s)	511, 590
Eco57I	CTGAAG	3 cut(s)	171, 483, 626
Eco91I	GGTNACC	1 cut(s)	572
EcoO65I	GGTNACC	1 cut(s)	572
EcoRI	GAATTC	1 cut(s)	264
FaeI	CATG	3 cut(s)	198, 308, 382
FatI	CATG	3 cut(s)	194, 304, 378
FbaI	TGATCA	1 cut(s)	505
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	3 cut(s)	18, 626, 706
GluI	GCNGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	3 cut(s)	455, 558, 583
HapII	CCGG	1 cut(s)	543
Hin1II	CATG	3 cut(s)	198, 308, 382
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	3 cut(s)	178, 321, 515
Hpy166II	GTNNAC	3 cut(s)	140, 656, 703
Hpy188III	TCNNGA	2 cut(s)	84, 488
Hpy8I	GTNNAC	3 cut(s)	140, 656, 703
HpyAV	CCTTC	2 cut(s)	163, 622
HpyCH4III	ACNGT	4 cut(s)	115, 231, 578, 590
HpyCH4V	TGCA	5 cut(s)	110, 365, 524, 599, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 388
Hsp92II	CATG	3 cut(s)	198, 308, 382
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	86, 211, 505
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	1 cut(s)	383
MaeI	CTAG	3 cut(s)	18, 626, 706
MaeIII	GTNAC	3 cut(s)	472, 572, 668
MalI	GATC	3 cut(s)	88, 213, 507
MboI	GATC	3 cut(s)	86, 211, 505
MboII	GAAGA	3 cut(s)	137, 180, 302
MflI	RGATCY	2 cut(s)	86, 211
MhlI	GDGCHC	4 cut(s)	45, 299, 543, 658
MlsI	TGGCCA	1 cut(s)	558
MluCI	AATT	9 cut(s)	26, 249, 264, 420, 493, 603, 616, 630, 678
MluNI	TGGCCA	1 cut(s)	558
MnlI	CCTC	1 cut(s)	330
Mox20I	TGGCCA	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	558
MseI	TTAA	5 cut(s)	29, 75, 218, 237, 419
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	558
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	2 cut(s)	371, 388
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	3 cut(s)	86, 211, 505
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	3 cut(s)	198, 308, 382
NlaIV	GGNNCC	3 cut(s)	213, 228, 540
OliI	CACNNNNGTG	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	373
PspEI	GGTNACC	1 cut(s)	572
PspN4I	GGNNCC	3 cut(s)	213, 228, 540
PspPI	GGNCC	2 cut(s)	511, 590
PsuI	RGATCY	2 cut(s)	86, 211
RsaI	GTAC	3 cut(s)	156, 350, 639
RsaNI	GTAC	3 cut(s)	155, 349, 638
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	5 cut(s)	29, 75, 218, 237, 419
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	3 cut(s)	86, 211, 505
Sau96I	GGNCC	2 cut(s)	511, 590
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	4 cut(s)	45, 299, 543, 658
SinI	GGWCC	2 cut(s)	511, 590
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	9 cut(s)	26, 249, 264, 420, 493, 603, 616, 630, 678
SseBI	AGGCCT	1 cut(s)	455
SsiI	CCGC	1 cut(s)	514
SspMI	CTAG	3 cut(s)	18, 626, 706
StuI	AGGCCT	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	541
TaaI	ACNGT	4 cut(s)	115, 231, 578, 590
TasI	AATT	9 cut(s)	26, 249, 264, 420, 493, 603, 616, 630, 678
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	5 cut(s)	29, 75, 218, 237, 419
Tru9I	TTAA	5 cut(s)	29, 75, 218, 237, 419
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	371
TspDTI	ATGAA	4 cut(s)	17, 223, 270, 302
TspGWI	ACGGA	2 cut(s)	309, 366
TspRI	CASTG	1 cut(s)	147
VneI	GTGCAC	1 cut(s)	654
VpaK11BI	GGWCC	2 cut(s)	511, 590
XapI	RAATTY	3 cut(s)	264, 493, 630
XcmI	CCANNNNNNNNNTGG	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	3 cut(s)	18, 626, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.