Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042569.1

Orthogroup ID

OG0007705

Physical Location & Seq

Genomic Coordinates Reverse (-)

3049 .. 5911

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042569.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgcctaaggtccgcttccttgcaaggtctttcggggtgcccggaaatcatcttggccagcaaagtaacggttaccgttggccttacggtcctgttgcagtaattactcccttcaattttccactagaaattcccgtacttcagttgatgggtgcactctatatgggtaacaaaccaattctaaaagtggatagcaaggtaagccttgttatggaccaaatgatgaggctgcttcattactgtgggttaccagtagaggatgttgacttcatcaattctgatgggaagacaatgaacaaactattattggaggcaaatccacgaatgaccctcttcaccggtagctcaagagtagcagagaagttggctgctgacctgaagggacgtgttaaattagaagatgcaggatttgactggaagatattagggcctgacgttcgtgaggaggactatgttgcgtgggtctgtgatcaggatgcatatgcatgcagtggccaaaagtgctctgcacagtcaattctcttcatgcatgagaactggtctaagacttcacttctatccaaaatgaaagatctggctgagagaaggaagttagaagatttaacaattggccctgtcctaacattgacaactgaaacaatgctagatcatgcgaataaattgcttcagataccaggttcaaagctactctttgggggtgaacctttagaggatcattccattccacctgtatatggtgctattaagcctacggctatttatgttccacttgaagaaatgttgaaggaaaataactatgaacttgtaacaagagaaatttttgggccatttcaggttgtcactgagtataagaaagatcaactcccattggtgttagatgctctagagaggatgcatgcacatttaacagctgctgtcgtgtcaaacgatccccactttcaacaggaagttcttggcaacacagtgaacgggactacttatactggactgagagcaagaacaactggcgctccacagaaccactggtttggaccagctggagatccgctgggtgctggcatcggaactccagaagcaataaagctcgtttggtcctgccatagagaaatcatctatgatgtcggtccaatgccaaagcagtgggaacttccaccttctacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006560 GO:0006562 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010133 GO:0016054 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0055114 GO:0071704 GO:0072593 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00250 ko00330 ko01100 map00250 map00330 map01100

Pfam Domains

Protein Families

Aldedh

Protein Analysis

387

Amino Acids

43.12

Weight (kDa)

5.84

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62530
fragaria_vesca	FvH4_5g15350 FvH4_5g15350 FvH4_5g15350 FvH4_5g15350 FvH4_5g15350
malus_domestica	MD06G1189000.v1.1 MD14G1196000.v1.1
prunus_persica	Prupe.5G187700_v2.0.a1 Prupe.5G187700_v2.0.a1
pyrus_communis	pycom06g16790 pycom14g16270
rosa_chinensis	RchiOBHm_Chr7g0180721
rosa_laevigata	RLG00000005237
rosa_multiflora	Rmu_co8325821.1_g000001 Rmu_sc0007457.1_g000024 Rmu_sc0032324.1_g000001 Rmu_sc0042569.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272620
rosa_rugosa	Rorug06G0435200
rosa_samantha	Rh7AG036900 Rh7BG036700 Rh7DG036900
rosa_wichuraiana	Rw7G003050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	2 cut(s)	13, 1046
AclWI	GGATC	3 cut(s)	720, 923, 1037
AcoI	YGGCCR	2 cut(s)	55, 493
AcsI	RAATTY	2 cut(s)	129, 816
AcuI	CTGAAG	3 cut(s)	125, 398, 650
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	2 cut(s)	211, 734
AflIII	ACRYGT	1 cut(s)	385
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	5 cut(s)	115, 681, 773, 784, 941
AjiI	CACGTC	1 cut(s)	386
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	5 cut(s)	345, 685, 911, 1037, 1084
AluI	AGCT	5 cut(s)	345, 685, 911, 1037, 1084
Alw21I	GWGCWC	2 cut(s)	157, 506
Alw44I	GTGCAC	1 cut(s)	153
AlwI	GGATC	3 cut(s)	720, 923, 1037
AlwNI	CAGNNNCTG	1 cut(s)	914
AoxI	GGCC	6 cut(s)	55, 80, 428, 493, 610, 824
ApaLI	GTGCAC	1 cut(s)	153
ApeKI	GCWGC	3 cut(s)	229, 368, 911
ApoI	RAATTY	2 cut(s)	129, 816
AsiGI	ACCGGT	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	1010
AspS9I	GGNCC	9 cut(s)	10, 89, 214, 428, 611, 824, 1031, 1092, 1124
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	328, 710
AvaII	GGWCC	6 cut(s)	10, 89, 214, 1031, 1092, 1124
AxyI	CCTNAGG	1 cut(s)	6
BaeGI	GKGCMC	2 cut(s)	42, 157
BalI	TGGCCA	2 cut(s)	57, 495
BanI	GGYRCC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	293
Bbv12I	GWGCWC	2 cut(s)	157, 506
BbvI	GCAGC	3 cut(s)	216, 355, 898
BccI	CCATC	2 cut(s)	142, 275
BceAI	ACGGC	1 cut(s)	768
BcgI	CGANNNNNNTGC	2 cut(s)	643, 677
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	42
BfaI	CTAG	3 cut(s)	125, 644, 884
BfoI	RGCGCY	1 cut(s)	1011
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	3 cut(s)	230, 369, 912
BlsI	GCNGC	3 cut(s)	231, 370, 913
Bme1390I	CCNGG	2 cut(s)	42, 675
Bme18I	GGWCC	6 cut(s)	10, 89, 214, 1031, 1092, 1124
BmgBI	CACGTC	1 cut(s)	386
BmgT120I	GGNCC	9 cut(s)	10, 89, 214, 428, 611, 824, 1031, 1092, 1124
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	2 cut(s)	42, 675
BmsI	GCATC	5 cut(s)	391, 466, 868, 882, 1068
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	2 cut(s)	1053, 1059
BpuEI	CTTGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	994, 1024
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 734
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	6 cut(s)	251, 419, 542, 988, 1009, 1028
Bse21I	CCTNAGG	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	675
BseGI	GGATG	3 cut(s)	265, 481, 897
BseLI	CCNNNNNNNGG	2 cut(s)	211, 734
BseMII	CTCAG	3 cut(s)	570, 834, 980
BseNI	ACTGG	6 cut(s)	251, 419, 542, 988, 1009, 1028
BseRI	GAGGAG	1 cut(s)	458
BseSI	GKGCMC	2 cut(s)	42, 157
BseXI	GCAGC	3 cut(s)	216, 355, 898
BseYI	CCCAGC	1 cut(s)	1048
BsgI	GTGCAG	1 cut(s)	492
BshFI	GGCC	6 cut(s)	57, 82, 430, 495, 612, 826
BshNI	GGYRCC	1 cut(s)	37
BshTI	ACCGGT	1 cut(s)	338
BsiHKAI	GWGCWC	2 cut(s)	157, 506
BsiSI	CCGG	2 cut(s)	42, 339
BslFI	GGGAC	2 cut(s)	396, 985
BslI	CCNNNNNNNGG	2 cut(s)	211, 734
BsmFI	GGGAC	2 cut(s)	396, 985
BsnI	GGCC	6 cut(s)	57, 82, 430, 495, 612, 826
Bsp1286I	GDGCHC	3 cut(s)	42, 157, 506
Bsp143I	GATC	7 cut(s)	469, 571, 646, 712, 856, 928, 1042
BspACI	CCGC	2 cut(s)	13, 1046
BspANI	GGCC	6 cut(s)	57, 82, 430, 495, 612, 826
BspCNI	CTCAG	3 cut(s)	571, 835, 981
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	3 cut(s)	720, 923, 1037
BspT107I	GGYRCC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	6 cut(s)	251, 419, 542, 988, 1009, 1028
BssAI	RCCGGY	1 cut(s)	338
BssMI	GATC	7 cut(s)	469, 571, 646, 712, 856, 928, 1042
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	6 cut(s)	71, 77, 89, 242, 513, 964
Bst6I	CTCTTC	2 cut(s)	338, 527
BstC8I	GCNNGC	4 cut(s)	59, 487, 897, 1057
BstDEI	CTNAG	5 cut(s)	6, 543, 579, 843, 989
BstEII	GGTNACC	2 cut(s)	71, 246
BstF5I	GGATG	3 cut(s)	265, 481, 897
BstH2I	RGCGCY	1 cut(s)	1011
BstHHI	GCGC	1 cut(s)	1010
BstKTI	GATC	7 cut(s)	472, 574, 649, 715, 859, 931, 1045
BstMBI	GATC	7 cut(s)	469, 571, 646, 712, 856, 928, 1042
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 501
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	2 cut(s)	489, 899
BstPI	GGTNACC	2 cut(s)	71, 246
BstSCI	CCNGG	2 cut(s)	40, 673
BstSLI	GKGCMC	2 cut(s)	42, 157
BstV1I	GCAGC	3 cut(s)	216, 355, 898
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	2 cut(s)	571, 1042
BstXI	CCANNNNNNTGG	2 cut(s)	1028, 1140
BstYI	RGATCY	2 cut(s)	571, 1042
Bsu36I	CCTNAGG	1 cut(s)	6
BsuRI	GGCC	6 cut(s)	57, 82, 430, 495, 612, 826
BtrI	CACGTC	1 cut(s)	386
BtsCI	GGATG	3 cut(s)	265, 481, 897
BtsI	GCAGTG	2 cut(s)	496, 1145
BtsIMutI	CAGTG	5 cut(s)	496, 840, 969, 1021, 1145
Cac8I	GCNNGC	4 cut(s)	59, 487, 897, 1057
CaiI	CAGNNNCTG	1 cut(s)	914
CfoI	GCGC	1 cut(s)	1010
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	9 cut(s)	10, 89, 214, 428, 611, 824, 1031, 1092, 1124
CsiI	ACCWGGT	1 cut(s)	673
Csp6I	GTAC	1 cut(s)	137
CspAI	ACCGGT	1 cut(s)	338
CviAII	CATG	5 cut(s)	486, 526, 530, 650, 896
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	5 cut(s)	6, 543, 579, 843, 989
DpnI	GATC	7 cut(s)	471, 573, 648, 714, 858, 930, 1044
DpnII	GATC	7 cut(s)	469, 571, 646, 712, 856, 928, 1042
EaeI	YGGCCR	2 cut(s)	55, 493
Eam1104I	CTCTTC	2 cut(s)	338, 527
EarI	CTCTTC	2 cut(s)	338, 527
Eco47I	GGWCC	6 cut(s)	10, 89, 214, 1031, 1092, 1124
Eco57I	CTGAAG	3 cut(s)	125, 398, 650
Eco81I	CCTNAGG	1 cut(s)	6
Eco91I	GGTNACC	2 cut(s)	71, 246
EcoO109I	RGGNCCY	1 cut(s)	428
EcoO65I	GGTNACC	2 cut(s)	71, 246
EcoRII	CCWGG	1 cut(s)	673
EcoT22I	ATGCAT	4 cut(s)	481, 487, 531, 897
FaeI	CATG	5 cut(s)	489, 529, 533, 653, 899
FalI	AAGNNNNNCTT	3 cut(s)	31, 674, 706
FaqI	GGGAC	2 cut(s)	396, 985
FatI	CATG	5 cut(s)	485, 525, 529, 649, 895
FauNDI	CATATG	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	3 cut(s)	230, 369, 912
FokI	GGATG	3 cut(s)	272, 488, 904
Fsp4HI	GCNGC	3 cut(s)	230, 369, 912
FspBI	CTAG	3 cut(s)	125, 644, 884
GlaI	GCGC	1 cut(s)	1009
GluI	GCNGC	3 cut(s)	230, 369, 912
GsaI	CCCAGC	1 cut(s)	1052
GsuI	CTGGAG	2 cut(s)	1053, 1059
HaeII	RGCGCY	1 cut(s)	1011
HaeIII	GGCC	6 cut(s)	57, 82, 430, 495, 612, 826
HapII	CCGG	2 cut(s)	42, 339
HhaI	GCGC	1 cut(s)	1010
Hin1II	CATG	5 cut(s)	489, 529, 533, 653, 899
Hin6I	GCGC	1 cut(s)	1008
HinP1I	GCGC	1 cut(s)	1008
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HpaII	CCGG	2 cut(s)	42, 339
HphI	GGTGA	2 cut(s)	328, 710
Hpy166II	GTNNAC	4 cut(s)	155, 265, 701, 967
Hpy188I	TCNGA	3 cut(s)	280, 669, 1064
Hpy188III	TCNNGA	5 cut(s)	348, 440, 473, 884, 1070
Hpy8I	GTNNAC	4 cut(s)	155, 265, 701, 967
HpyAV	CCTTC	5 cut(s)	121, 373, 579, 778, 1164
HpyCH4III	ACNGT	6 cut(s)	71, 77, 89, 242, 513, 964
HpyCH4IV	ACGT	2 cut(s)	385, 435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 501
HpyF3I	CTNAG	5 cut(s)	6, 543, 579, 843, 989
HpySE526I	ACGT	2 cut(s)	385, 435
Hsp92II	CATG	5 cut(s)	489, 529, 533, 653, 899
HspAI	GCGC	1 cut(s)	1008
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	7 cut(s)	469, 571, 646, 712, 856, 928, 1042
LmnI	GCTCC	1 cut(s)	1015
Lsp1109I	GCAGC	3 cut(s)	216, 355, 898
LweI	GCATC	5 cut(s)	391, 466, 868, 882, 1068
MabI	ACCWGGT	1 cut(s)	673
MaeI	CTAG	3 cut(s)	125, 644, 884
MaeII	ACGT	2 cut(s)	385, 435
MaeIII	GTNAC	6 cut(s)	65, 71, 167, 246, 805, 838
MalI	GATC	7 cut(s)	471, 573, 648, 714, 858, 930, 1044
MboI	GATC	7 cut(s)	469, 571, 646, 712, 856, 928, 1042
MboII	GAAGA	7 cut(s)	298, 325, 410, 430, 514, 608, 785
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	2 cut(s)	571, 1042
MhlI	GDGCHC	3 cut(s)	42, 157, 506
MlsI	TGGCCA	2 cut(s)	57, 495
MluNI	TGGCCA	2 cut(s)	57, 495
MnlI	CCTC	8 cut(s)	219, 250, 304, 341, 436, 439, 703, 882
Mox20I	TGGCCA	2 cut(s)	57, 495
Mph1103I	ATGCAT	4 cut(s)	481, 487, 531, 897
MscI	TGGCCA	2 cut(s)	57, 495
MseI	TTAA	5 cut(s)	390, 602, 744, 905, 1162
MslI	CAYNNNNRTG	2 cut(s)	240, 484
Msp20I	TGGCCA	2 cut(s)	57, 495
MspA1I	CMGCKG	3 cut(s)	911, 1037, 1048
MspI	CCGG	2 cut(s)	42, 339
MspR9I	CCNGG	2 cut(s)	42, 675
MunI	CAATTG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	2 cut(s)	201, 501
NciI	CCSGG	1 cut(s)	42
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	7 cut(s)	469, 571, 646, 712, 856, 928, 1042
NlaIII	CATG	5 cut(s)	489, 529, 533, 653, 899
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	838
NsiI	ATGCAT	4 cut(s)	481, 487, 531, 897
NspI	RCATGY	2 cut(s)	489, 899
PaeI	GCATGC	2 cut(s)	489, 899
PcsI	WCGNNNNNNNCGW	1 cut(s)	924
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	3 cut(s)	231, 370, 913
Psp6I	CCWGG	1 cut(s)	673
PspEI	GGTNACC	2 cut(s)	71, 246
PspFI	CCCAGC	1 cut(s)	1048
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	9 cut(s)	10, 89, 214, 428, 611, 824, 1031, 1092, 1124
PstNI	CAGNNNCTG	1 cut(s)	914
PsuI	RGATCY	2 cut(s)	571, 1042
PvuII	CAGCTG	2 cut(s)	911, 1037
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
RseI	CAYNNNNRTG	2 cut(s)	240, 484
SaqAI	TTAA	5 cut(s)	390, 602, 744, 905, 1162
SatI	GCNGC	3 cut(s)	230, 369, 912
Sau3AI	GATC	7 cut(s)	469, 571, 646, 712, 856, 928, 1042
Sau96I	GGNCC	9 cut(s)	10, 89, 214, 428, 611, 824, 1031, 1092, 1124
ScrFI	CCNGG	2 cut(s)	42, 675
SduI	GDGCHC	3 cut(s)	42, 157, 506
SexAI	ACCWGGT	1 cut(s)	673
SfaNI	GCATC	5 cut(s)	391, 466, 868, 882, 1068
SinI	GGWCC	6 cut(s)	10, 89, 214, 1031, 1092, 1124
SmiMI	CAYNNNNRTG	2 cut(s)	240, 484
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
SphI	GCATGC	2 cut(s)	489, 899
SsiI	CCGC	2 cut(s)	13, 1046
SspMI	CTAG	3 cut(s)	125, 644, 884
StyD4I	CCNGG	2 cut(s)	40, 673
TaaI	ACNGT	6 cut(s)	71, 77, 89, 242, 513, 964
TaiI	ACGT	2 cut(s)	388, 438
TaqII	GACCGA	1 cut(s)	1112
Tru1I	TTAA	5 cut(s)	390, 602, 744, 905, 1162
Tru9I	TTAA	5 cut(s)	390, 602, 744, 905, 1162
TscAI	CASTG	5 cut(s)	496, 847, 969, 1028, 1145
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	3 cut(s)	229, 368, 911
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	6 cut(s)	224, 259, 308, 514, 581, 813
TspRI	CASTG	5 cut(s)	496, 847, 969, 1028, 1145
VneI	GTGCAC	1 cut(s)	153
VpaK11BI	GGWCC	6 cut(s)	10, 89, 214, 1031, 1092, 1124
XapI	RAATTY	2 cut(s)	129, 816
XbaI	TCTAGA	1 cut(s)	883
XceI	RCATGY	2 cut(s)	489, 899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1020
XspI	CTAG	3 cut(s)	125, 644, 884
Zsp2I	ATGCAT	4 cut(s)	481, 487, 531, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.