Rmu_co8325821.1_g000001

Dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8325821.1
Physical Location & Seq
Reverse (-)
1 .. 890
890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8325821.1_g000001.1.cds

Sequence Viewer

Length: 338 bp
atgatggaggattggtttagatctgctattgtttattttgtatcattgaagaattttataagatatgttgttttgtcttatgacagatctgctcattctttaccctttgcaactgttgaagccgaagagatttcgggttcactgcctgctgaagtacataacttggtgaagggtaaatggacgaaatcttctacatggaacactattgtggatccattaaacggggaaccgttcattaaagttgctgaaattgatgaaacaggaattcagccctttgtggagagcttgtccaagtgccccaaacatggtcttcataatccgttcaaatcaccagagag

Protein Analysis

112

Amino Acids

12.68

Weight (kDa)

5.78

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AclWI GGATC 2 cut(s) 206, 219
AcsI RAATTY 2 cut(s) 52, 264
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 2 cut(s) 221, 305
AgsI TTSAA 3 cut(s) 49, 119, 325
AleI CACNNNNGTG 1 cut(s) 206
AluBI AGCT 1 cut(s) 285
AluI AGCT 1 cut(s) 285
AlwI GGATC 2 cut(s) 206, 219
ApoI RAATTY 2 cut(s) 52, 264
AsuHPI GGTGA 2 cut(s) 178, 321
BaeGI GKGCMC 1 cut(s) 299
BamHI GGATCC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 302
BglII AGATCT 2 cut(s) 20, 86
BmiI GGNNCC 2 cut(s) 213, 228
BpiI GAAGAC 1 cut(s) 302
BsaXI ACNNNNNCTCC 3 cut(s) 29, 272, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 305
BseLI CCNNNNNNNGG 2 cut(s) 221, 305
BseSI GKGCMC 1 cut(s) 299
BslI CCNNNNNNNGG 2 cut(s) 221, 305
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 3 cut(s) 20, 86, 211
BspLI GGNNCC 2 cut(s) 213, 228
BspPI GGATC 2 cut(s) 206, 219
BssMI GATC 3 cut(s) 20, 86, 211
Bst4CI ACNGT 2 cut(s) 115, 231
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 147
BstKTI GATC 3 cut(s) 23, 89, 214
BstMBI GATC 3 cut(s) 20, 86, 211
BstSLI GKGCMC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 3 cut(s) 20, 86, 211
BstYI RGATCY 3 cut(s) 20, 86, 211
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 155
CviAII CATG 2 cut(s) 195, 305
CviJI RGCY 3 cut(s) 122, 271, 285
CviKI_1 RGCY 3 cut(s) 122, 271, 285
CviQI GTAC 1 cut(s) 155
DpnI GATC 3 cut(s) 22, 88, 213
DpnII GATC 3 cut(s) 20, 86, 211
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 264
FaeI CATG 2 cut(s) 198, 308
FaiI YATR 7 cut(s) 59, 66, 81, 159, 196, 306, 315
FatI CATG 2 cut(s) 194, 304
Hin1II CATG 2 cut(s) 198, 308
HphI GGTGA 2 cut(s) 178, 321
Hpy166II GTNNAC 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 115, 231
HpyCH4V TGCA 1 cut(s) 110
Hsp92II CATG 2 cut(s) 198, 308
Kzo9I GATC 3 cut(s) 20, 86, 211
LpnPI CCDG 2 cut(s) 159, 246
MalI GATC 3 cut(s) 22, 88, 213
MboI GATC 3 cut(s) 20, 86, 211
MboII GAAGA 4 cut(s) 61, 137, 180, 302
MflI RGATCY 3 cut(s) 20, 86, 211
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 3 cut(s) 52, 249, 264
MseI TTAA 2 cut(s) 218, 237
MslI CAYNNNNRTG 1 cut(s) 206
NdeII GATC 3 cut(s) 20, 86, 211
NlaIII CATG 2 cut(s) 198, 308
NlaIV GGNNCC 2 cut(s) 213, 228
OliI CACNNNNGTG 1 cut(s) 206
PsiI TTATAA 1 cut(s) 59
PspN4I GGNNCC 2 cut(s) 213, 228
PsuI RGATCY 3 cut(s) 20, 86, 211
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 2 cut(s) 218, 237
Sau3AI GATC 3 cut(s) 20, 86, 211
SduI GDGCHC 1 cut(s) 299
SetI ASST 1 cut(s) 287
SgeI CNNG 9 cut(s) 147, 158, 175, 207, 235, 273, 298, 304, 317
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 3 cut(s) 52, 249, 264
TaaI ACNGT 2 cut(s) 115, 231
TasI AATT 3 cut(s) 52, 249, 264
TatI WGTACW 1 cut(s) 154
Tru1I TTAA 2 cut(s) 218, 237
Tru9I TTAA 2 cut(s) 218, 237
TscAI CASTG 1 cut(s) 147
TspDTI ATGAA 3 cut(s) 223, 270, 302
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 1 cut(s) 147
XapI RAATTY 2 cut(s) 52, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.