Rw7G003050

Dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
2461130 .. 2465945
4816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G003050.1

Sequence Viewer

Length: 1464 bp
ATGAATATGATTCTGGCTAGCAGAGAATTAAGAACCAGAGTGCCCAAAACAGCTTTGAGCTGGTTTAGTTCTTTTAATCTATCAAGATCTGCTCATTCTTTACCCTTTGCAACTGTTGAAGCCGAAGAGATTTCGGGTTCACTGCCTGCTGAACCCTTTGTGGAGAGCTTGTCCAAGTGCCCCAAACATGGTCTTCATAATCCGTTCAAATCACCAGAGAGGTATCTTTTGTACGGAGACATATCTGCAAAGGCAGCTACCATGCTTTCTCTGCCAAAGGTTGCTGATTTCTTTACAAGGTTAATTCAAAGGGTTGCTCCAAAGAGCTACCAGCAGGCCTATGCTGAAGTTTATGTAACTCAAAAGTTTCTGGAGAATTTCTCTGGTGATCAGGTCCGCTTCCTTGCAAGGTCTTTCGGGGTGCCCGGAAATCATCTTGGCCAGCAAAGTAATGGTTACCGTTGGCCTTACGGTCCTGTTGCAGTAATTACTCCCTTCAATTTTCCACTAGAAATTCCCGTACTTCAGTTGATGGGTGCACTCTATATGGGTAACAAACCAATTCTAAAAGTGGATAGCAAGGTAAGCCTTGTTATGGACCAAATGATGAGGCTGCTTCATTACTGTGGGTTACCAGTAGAGGATGTTGACTTCATCAATTCTGATGGGAAGACAATGAACAAACTATTATTGGAGGCAAATCCACGAATGACCCTCTTCACTGGTAGCTCAAGAGTAGCAGAGAAGTTGGCTGCTGACCTGAAGGGACGTGTTAAATTAGAAGATGCAGGATTTGACTGGAAGATATTAGGGCCTGACGTTCATGAGGAGGACTATGTTGCGTGGGTCTGTGATCAGGATGCATATGCATGCAGTGGCCAAAAGTGCTCTGCACAATCAATTCTCTTCATGCATGAGAACTGGTCTAAGACTTCACTTCTATCCAAAATGAAAGATCTGGCTGAGAGAAGGAAGTTAGAAGATTTAACAATTGGCCCTGTCCTAACAGTAAATCATTCCATTCCACCTGTATATGGTGCTATTAAGCCTACGGCTATTTATGTTCCACTTGAAGAAATGTTGAAGGAAAATAACTATGAACTTGTAACAAGAGAAATTTTTGGGCCATTTCAGGTTGTCACTGAGTATAAGAAAGATCAACTCCCATTGGTGTTAGATGCTCTAGAGAGGATGCATGCACATTTAACAGCTGCTGTCGTGTCAAACGATCCCCACTTTCAACAGGAAGTTCTTGGCAACACAGTGAACGGGACTACTTATGCTGGACTGAGAGCAAGAACAACTGGCGCTCCACAGAACCACTGGTTTGGACCAGCTGGAGATCCGCTGGGTGCTGGCATCGGAACTCCGGAAGCAATAAAGCTCGTTTGGTCCTGCCATAGAGAAATCATCTATGATGTCGGTCCAATGCCAAAGCAGTGGGAACTTCCACCTTCTACTTAA

Protein Analysis

487

Amino Acids

54.37

Weight (kDa)

6.51

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 93 - 336 1.7e-29 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 421
AccIII TCCGGA 1 cut(s) 1369
AciI CCGC 2 cut(s) 397, 1346
AclWI GGATC 2 cut(s) 1223, 1337
AcoI YGGCCR 2 cut(s) 439, 877
AcsI RAATTY 3 cut(s) 376, 513, 1116
AcuI CTGAAG 3 cut(s) 366, 509, 782
AfaI GTAC 2 cut(s) 233, 522
AfiI CCNNNNNNNGG 3 cut(s) 188, 595, 1034
AflIII ACRYGT 1 cut(s) 769
AgsI TTSAA 7 cut(s) 119, 208, 308, 499, 1073, 1084, 1241
AjiI CACGTC 1 cut(s) 770
AluBI AGCT 9 cut(s) 53, 60, 168, 257, 327, 729, 1211, 1337, 1384
AluI AGCT 9 cut(s) 53, 60, 168, 257, 327, 729, 1211, 1337, 1384
Alw21I GWGCWC 2 cut(s) 541, 890
Alw26I GTCTC 1 cut(s) 231
Alw44I GTGCAC 1 cut(s) 537
AlwI GGATC 2 cut(s) 1223, 1337
AlwNI CAGNNNCTG 1 cut(s) 1214
Aor13HI TCCGGA 1 cut(s) 1369
AoxI GGCC 7 cut(s) 336, 439, 464, 812, 877, 994, 1124
ApaLI GTGCAC 1 cut(s) 537
ApeKI GCWGC 4 cut(s) 254, 613, 752, 1211
ApoI RAATTY 3 cut(s) 376, 513, 1116
AspLEI GCGC 1 cut(s) 1310
AspS9I GGNCC 9 cut(s) 394, 473, 598, 812, 995, 1124, 1331, 1392, 1424
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 2 cut(s) 204, 398
AsuNHI GCTAGC 1 cut(s) 17
AvaII GGWCC 6 cut(s) 394, 473, 598, 1331, 1392, 1424
BaeGI GKGCMC 4 cut(s) 45, 182, 426, 541
BalI TGGCCA 2 cut(s) 441, 879
BanI GGYRCC 1 cut(s) 421
BbsI GAAGAC 2 cut(s) 185, 677
Bbv12I GWGCWC 2 cut(s) 541, 890
BbvI GCAGC 4 cut(s) 266, 600, 739, 1198
BccI CCATC 2 cut(s) 526, 659
BceAI ACGGC 1 cut(s) 1068
BclI TGATCA 2 cut(s) 388, 853
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 3 cut(s) 18, 509, 1184
BfoI RGCGCY 1 cut(s) 1311
BglII AGATCT 2 cut(s) 86, 955
BisI GCNGC 4 cut(s) 255, 614, 753, 1212
BlsI GCNGC 4 cut(s) 256, 615, 754, 1213
Bme1390I CCNGG 1 cut(s) 426
Bme18I GGWCC 6 cut(s) 394, 473, 598, 1331, 1392, 1424
BmgBI CACGTC 1 cut(s) 770
BmgT120I GGNCC 9 cut(s) 394, 473, 598, 812, 995, 1124, 1331, 1392, 1424
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 5 cut(s) 775, 850, 1168, 1182, 1368
BmtI GCTAGC 1 cut(s) 21
BpiI GAAGAC 2 cut(s) 185, 677
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpmI CTGGAG 2 cut(s) 392, 1359
BpuEI CTTGAG 1 cut(s) 715
BpuMI CCSGG 1 cut(s) 426
BsaWI WCCGGW 1 cut(s) 1369
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 1294, 1324
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 595, 1034
Bse1I ACTGG 6 cut(s) 635, 727, 803, 926, 1309, 1328
BseAI TCCGGA 1 cut(s) 1369
BseGI GGATG 3 cut(s) 649, 865, 1197
BseLI CCNNNNNNNGG 3 cut(s) 188, 595, 1034
BseMII CTCAG 3 cut(s) 954, 1134, 1280
BseNI ACTGG 6 cut(s) 635, 727, 803, 926, 1309, 1328
BseRI GAGGAG 1 cut(s) 842
BseSI GKGCMC 4 cut(s) 45, 182, 426, 541
BseXI GCAGC 4 cut(s) 266, 600, 739, 1198
BseYI CCCAGC 1 cut(s) 1348
BsgI GTGCAG 1 cut(s) 876
BshFI GGCC 7 cut(s) 338, 441, 466, 814, 879, 996, 1126
BshNI GGYRCC 1 cut(s) 421
BsiHKAI GWGCWC 2 cut(s) 541, 890
BsiSI CCGG 2 cut(s) 426, 1370
BslFI GGGAC 2 cut(s) 780, 1285
BslI CCNNNNNNNGG 3 cut(s) 188, 595, 1034
BsmAI GTCTC 1 cut(s) 231
BsmFI GGGAC 2 cut(s) 780, 1285
BsnI GGCC 7 cut(s) 338, 441, 466, 814, 879, 996, 1126
Bsp1286I GDGCHC 5 cut(s) 45, 182, 426, 541, 890
Bsp13I TCCGGA 1 cut(s) 1369
Bsp143I GATC 7 cut(s) 86, 388, 853, 955, 1156, 1228, 1342
BspACI CCGC 2 cut(s) 397, 1346
BspANI GGCC 7 cut(s) 338, 441, 466, 814, 879, 996, 1126
BspCNI CTCAG 3 cut(s) 955, 1135, 1281
BspEI TCCGGA 1 cut(s) 1369
BspHI TCATGA 1 cut(s) 823
BspLI GGNNCC 1 cut(s) 423
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 2 cut(s) 1223, 1337
BspT107I GGYRCC 1 cut(s) 421
BsrI ACTGG 6 cut(s) 635, 727, 803, 926, 1309, 1328
BssMI GATC 7 cut(s) 86, 388, 853, 955, 1156, 1228, 1342
Bst4CI ACNGT 6 cut(s) 115, 461, 473, 626, 1009, 1264
Bst6I CTCTTC 3 cut(s) 120, 722, 911
BstC8I GCNNGC 7 cut(s) 19, 147, 336, 443, 871, 1197, 1357
BstDEI CTNAG 4 cut(s) 927, 963, 1143, 1289
BstEII GGTNACC 2 cut(s) 455, 630
BstF5I GGATG 3 cut(s) 649, 865, 1197
BstH2I RGCGCY 1 cut(s) 1311
BstHHI GCGC 1 cut(s) 1310
BstKTI GATC 7 cut(s) 89, 391, 856, 958, 1159, 1231, 1345
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 7 cut(s) 86, 388, 853, 955, 1156, 1228, 1342
BstMWI GCNNNNNNNGC 4 cut(s) 254, 271, 585, 885
BstNSI RCATGY 2 cut(s) 873, 1199
BstPI GGTNACC 2 cut(s) 455, 630
BstSCI CCNGG 1 cut(s) 424
BstSLI GKGCMC 4 cut(s) 45, 182, 426, 541
BstV1I GCAGC 4 cut(s) 266, 600, 739, 1198
BstV2I GAAGAC 2 cut(s) 185, 677
BstX2I RGATCY 3 cut(s) 86, 955, 1342
BstXI CCANNNNNNTGG 2 cut(s) 1328, 1440
BstYI RGATCY 3 cut(s) 86, 955, 1342
BsuRI GGCC 7 cut(s) 338, 441, 466, 814, 879, 996, 1126
BtrI CACGTC 1 cut(s) 770
BtsCI GGATG 3 cut(s) 649, 865, 1197
BtsI GCAGTG 3 cut(s) 140, 880, 1445
BtsIMutI CAGTG 7 cut(s) 140, 720, 880, 1140, 1269, 1321, 1445
Cac8I GCNNGC 7 cut(s) 19, 147, 336, 443, 871, 1197, 1357
CaiI CAGNNNCTG 1 cut(s) 1214
CciI TCATGA 1 cut(s) 823
CfoI GCGC 1 cut(s) 1310
Cfr13I GGNCC 9 cut(s) 394, 473, 598, 812, 995, 1124, 1331, 1392, 1424
Csp6I GTAC 2 cut(s) 232, 521
CviAII CATG 7 cut(s) 188, 262, 824, 870, 910, 914, 1196
CviQI GTAC 2 cut(s) 232, 521
DdeI CTNAG 4 cut(s) 927, 963, 1143, 1289
DpnI GATC 7 cut(s) 88, 390, 855, 957, 1158, 1230, 1344
DpnII GATC 7 cut(s) 86, 388, 853, 955, 1156, 1228, 1342
EaeI YGGCCR 2 cut(s) 439, 877
Eam1104I CTCTTC 3 cut(s) 120, 722, 911
EarI CTCTTC 3 cut(s) 120, 722, 911
Eco147I AGGCCT 1 cut(s) 338
Eco47I GGWCC 6 cut(s) 394, 473, 598, 1331, 1392, 1424
Eco57I CTGAAG 3 cut(s) 366, 509, 782
Eco91I GGTNACC 2 cut(s) 455, 630
EcoO109I RGGNCCY 1 cut(s) 812
EcoO65I GGTNACC 2 cut(s) 455, 630
EcoT22I ATGCAT 4 cut(s) 865, 871, 915, 1197
FaeI CATG 7 cut(s) 191, 265, 827, 873, 913, 917, 1199
FaqI GGGAC 2 cut(s) 780, 1285
FatI CATG 7 cut(s) 187, 261, 823, 869, 909, 913, 1195
FauNDI CATATG 1 cut(s) 865
FbaI TGATCA 2 cut(s) 388, 853
Fnu4HI GCNGC 4 cut(s) 255, 614, 753, 1212
FokI GGATG 3 cut(s) 656, 872, 1204
Fsp4HI GCNGC 4 cut(s) 255, 614, 753, 1212
FspBI CTAG 3 cut(s) 18, 509, 1184
GlaI GCGC 1 cut(s) 1309
GluI GCNGC 4 cut(s) 255, 614, 753, 1212
GsaI CCCAGC 1 cut(s) 1352
GsuI CTGGAG 2 cut(s) 392, 1359
HaeII RGCGCY 1 cut(s) 1311
HaeIII GGCC 7 cut(s) 338, 441, 466, 814, 879, 996, 1126
HapII CCGG 2 cut(s) 426, 1370
HhaI GCGC 1 cut(s) 1310
Hin1II CATG 7 cut(s) 191, 265, 827, 873, 913, 917, 1199
Hin6I GCGC 1 cut(s) 1308
HinP1I GCGC 1 cut(s) 1308
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 1 cut(s) 10
HpaII CCGG 2 cut(s) 426, 1370
HphI GGTGA 2 cut(s) 204, 398
Hpy166II GTNNAC 4 cut(s) 140, 539, 649, 1267
Hpy188I TCNGA 2 cut(s) 664, 1364
Hpy188III TCNNGA 7 cut(s) 84, 371, 732, 824, 857, 1184, 1370
Hpy8I GTNNAC 4 cut(s) 140, 539, 649, 1267
HpyAV CCTTC 5 cut(s) 505, 757, 963, 1078, 1464
HpyCH4III ACNGT 6 cut(s) 115, 461, 473, 626, 1009, 1264
HpyCH4IV ACGT 2 cut(s) 769, 819
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 271, 585, 885
HpyF3I CTNAG 4 cut(s) 927, 963, 1143, 1289
HpySE526I ACGT 2 cut(s) 769, 819
Hsp92II CATG 7 cut(s) 191, 265, 827, 873, 913, 917, 1199
HspAI GCGC 1 cut(s) 1308
Kpn2I TCCGGA 1 cut(s) 1369
Ksp22I TGATCA 2 cut(s) 388, 853
Kzo9I GATC 7 cut(s) 86, 388, 853, 955, 1156, 1228, 1342
LmnI GCTCC 2 cut(s) 322, 1315
Lsp1109I GCAGC 4 cut(s) 266, 600, 739, 1198
LweI GCATC 5 cut(s) 775, 850, 1168, 1182, 1368
MaeI CTAG 3 cut(s) 18, 509, 1184
MaeII ACGT 2 cut(s) 769, 819
MaeIII GTNAC 6 cut(s) 355, 455, 551, 630, 1105, 1138
MalI GATC 7 cut(s) 88, 390, 855, 957, 1158, 1230, 1344
MboI GATC 7 cut(s) 86, 388, 853, 955, 1156, 1228, 1342
MboII GAAGA 9 cut(s) 137, 185, 682, 709, 794, 814, 898, 992, 1085
MfeI CAATTG 1 cut(s) 990
MflI RGATCY 3 cut(s) 86, 955, 1342
MhlI GDGCHC 5 cut(s) 45, 182, 426, 541, 890
MlsI TGGCCA 2 cut(s) 441, 879
MluNI TGGCCA 2 cut(s) 441, 879
MnlI CCTC 8 cut(s) 213, 603, 634, 688, 725, 820, 823, 1182
Mox20I TGGCCA 2 cut(s) 441, 879
Mph1103I ATGCAT 4 cut(s) 865, 871, 915, 1197
MroI TCCGGA 1 cut(s) 1369
MscI TGGCCA 2 cut(s) 441, 879
MseI TTAA 8 cut(s) 29, 75, 302, 774, 986, 1044, 1205, 1462
MslI CAYNNNNRTG 2 cut(s) 624, 868
Msp20I TGGCCA 2 cut(s) 441, 879
MspA1I CMGCKG 3 cut(s) 1211, 1337, 1348
MspI CCGG 2 cut(s) 426, 1370
MspR9I CCNGG 1 cut(s) 426
MunI CAATTG 1 cut(s) 990
MwoI GCNNNNNNNGC 4 cut(s) 254, 271, 585, 885
NciI CCSGG 1 cut(s) 426
NdeI CATATG 1 cut(s) 865
NdeII GATC 7 cut(s) 86, 388, 853, 955, 1156, 1228, 1342
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 7 cut(s) 191, 265, 827, 873, 913, 917, 1199
NlaIV GGNNCC 1 cut(s) 423
NmuCI GTSAC 1 cut(s) 1138
NsiI ATGCAT 4 cut(s) 865, 871, 915, 1197
NspI RCATGY 2 cut(s) 873, 1199
PaeI GCATGC 2 cut(s) 873, 1199
PagI TCATGA 1 cut(s) 823
PceI AGGCCT 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 1224
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 4 cut(s) 256, 615, 754, 1213
PspEI GGTNACC 2 cut(s) 455, 630
PspFI CCCAGC 1 cut(s) 1348
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 9 cut(s) 394, 473, 598, 812, 995, 1124, 1331, 1392, 1424
PstNI CAGNNNCTG 1 cut(s) 1214
PsuI RGATCY 3 cut(s) 86, 955, 1342
PvuII CAGCTG 2 cut(s) 1211, 1337
RsaI GTAC 2 cut(s) 233, 522
RsaNI GTAC 2 cut(s) 232, 521
RseI CAYNNNNRTG 2 cut(s) 624, 868
SaqAI TTAA 8 cut(s) 29, 75, 302, 774, 986, 1044, 1205, 1462
SatI GCNGC 4 cut(s) 255, 614, 753, 1212
Sau3AI GATC 7 cut(s) 86, 388, 853, 955, 1156, 1228, 1342
Sau96I GGNCC 9 cut(s) 394, 473, 598, 812, 995, 1124, 1331, 1392, 1424
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 5 cut(s) 45, 182, 426, 541, 890
SfaNI GCATC 5 cut(s) 775, 850, 1168, 1182, 1368
SinI GGWCC 6 cut(s) 394, 473, 598, 1331, 1392, 1424
SmiMI CAYNNNNRTG 2 cut(s) 624, 868
SmlI CTYRAG 1 cut(s) 730
SmoI CTYRAG 1 cut(s) 730
SphI GCATGC 2 cut(s) 873, 1199
SseBI AGGCCT 1 cut(s) 338
SsiI CCGC 2 cut(s) 397, 1346
SspMI CTAG 3 cut(s) 18, 509, 1184
StuI AGGCCT 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 424
TaaI ACNGT 6 cut(s) 115, 461, 473, 626, 1009, 1264
TaiI ACGT 2 cut(s) 772, 822
TaqII GACCGA 1 cut(s) 1412
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 8 cut(s) 29, 75, 302, 774, 986, 1044, 1205, 1462
Tru9I TTAA 8 cut(s) 29, 75, 302, 774, 986, 1044, 1205, 1462
TscAI CASTG 7 cut(s) 147, 727, 880, 1147, 1269, 1328, 1445
TseFI GTSAC 1 cut(s) 1138
TseI GCWGC 4 cut(s) 254, 613, 752, 1211
Tsp45I GTSAC 1 cut(s) 1138
TspDTI ATGAA 9 cut(s) 17, 185, 608, 643, 692, 812, 898, 965, 1113
TspGWI ACGGA 2 cut(s) 192, 249
TspRI CASTG 7 cut(s) 147, 727, 880, 1147, 1269, 1328, 1445
VneI GTGCAC 1 cut(s) 537
VpaK11BI GGWCC 6 cut(s) 394, 473, 598, 1331, 1392, 1424
XapI RAATTY 3 cut(s) 376, 513, 1116
XbaI TCTAGA 1 cut(s) 1183
XceI RCATGY 2 cut(s) 873, 1199
XcmI CCANNNNNNNNNTGG 2 cut(s) 449, 1320
XspI CTAG 3 cut(s) 18, 509, 1184
Zsp2I ATGCAT 4 cut(s) 865, 871, 915, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.