MD15G1087200.v1.1

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0018487
Physical Location & Seq
Reverse (-)
6066216 .. 6067746
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1087200.v1.1.491

Sequence Viewer

Length: 447 bp
ATGATACAGGTTGATGATTTTGATCCATGCTCTGACAATTATGTGGAGACCTATCTAAATCTTCCGGAGGTTCAAGCGGCACTTCGTGTAATACCTACAGAGTGGTCAGCTTGCGGTGGAGTTGGATGGACGGACAGCCCAACCACCACTCTACTCACGATAAAGCAGCTGATAGCAAGGGGGATAAATTTATGGATATACAGTGGAGATACTGATGGGAGAGTACCAGTCACATCTTCTAGATGCCCCATAAATTACACTTTGAAATTGCCTCTACAAACTCCATGGCGACCCTGGTATCCAAATGGACAGGTTGGAGGATATGTAGCTGGGTACAAAGGGTTGACATTTATCACCATAAGAGGAGCAGGTCATATCAACCGCAGCGATCATTTACCTTCATCTCATCTTTTCTTCAGGGGAAGCTTCCACCTTCCTCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

149

Amino Acids

16.48

Weight (kDa)

6.89

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 6 - 136 2e-26 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018487)

Species Orthologous Gene IDs
malus_domestica MD15G1087200.v1.1
rosa_chinensis RchiOBHm_Chr6g0307101
rosa_multiflora Rmu_co8409487.1_g000001 Rmu_sc0001776.1_g000002
rosa_roxburghii Rroxscaffold_7G00161160 Rroxscaffold_7G00161170
rosa_rugosa Rorug06G0356900
rosa_samantha Rh6AG467500 Rh6BG432700 Rh6DG469500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 359
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 3 cut(s) 77, 114, 382
AclWI GGATC 1 cut(s) 17
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 400
AdeI CACNNNGTG 1 cut(s) 86
AfaI GTAC 2 cut(s) 225, 335
AgsI TTSAA 2 cut(s) 74, 265
AjnI CCWGG 1 cut(s) 293
AluBI AGCT 4 cut(s) 110, 169, 329, 426
AluI AGCT 4 cut(s) 110, 169, 329, 426
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 1 cut(s) 17
Aor13HI TCCGGA 1 cut(s) 64
ApeKI GCWGC 2 cut(s) 166, 384
ApoI RAATTY 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 346
BaeI ACNNNNGTAYC 2 cut(s) 281, 314
BbvI GCAGC 2 cut(s) 178, 396
BccI CCATC 2 cut(s) 120, 209
BciT130I CCWGG 1 cut(s) 295
BciVI GTATCC 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 359
BfuI GTATCC 1 cut(s) 309
BisI GCNGC 3 cut(s) 78, 167, 385
BlsI GCNGC 3 cut(s) 79, 168, 386
Bme1390I CCNGG 1 cut(s) 295
BmrFI CCNGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 284, 293
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bse1I ACTGG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 64
BseBI CCWGG 1 cut(s) 295
BseDI CCNNGG 2 cut(s) 284, 293
BseGI GGATG 1 cut(s) 131
BseJI GATNNNNATC 1 cut(s) 21
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 378
BseXI GCAGC 2 cut(s) 178, 396
BseYI CCCAGC 1 cut(s) 329
BsiSI CCGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 41
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 2 cut(s) 22, 388
Bsp19I CCATGG 1 cut(s) 284
BspACI CCGC 3 cut(s) 77, 114, 382
BspEI TCCGGA 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 284, 293
BssMI GATC 2 cut(s) 22, 388
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 131
BstKTI GATC 2 cut(s) 25, 391
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 2 cut(s) 22, 388
BstNI CCWGG 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 293
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 178, 396
BsuI GTATCC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 284
BtsCI GGATG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 208
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 112
Csp6I GTAC 2 cut(s) 224, 334
CviAII CATG 2 cut(s) 27, 285
CviJI RGCY 5 cut(s) 110, 138, 169, 329, 426
CviKI_1 RGCY 5 cut(s) 110, 138, 169, 329, 426
CviQI GTAC 2 cut(s) 224, 334
DpnI GATC 2 cut(s) 24, 390
DpnII GATC 2 cut(s) 22, 388
DraIII CACNNNGTG 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 2 cut(s) 30, 288
FaiI YATR 9 cut(s) 28, 42, 193, 199, 251, 286, 324, 359, 375
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FatI CATG 2 cut(s) 26, 284
Fnu4HI GCNGC 3 cut(s) 78, 167, 385
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 3 cut(s) 78, 167, 385
FspBI CTAG 1 cut(s) 240
GluI GCNGC 3 cut(s) 78, 167, 385
GsaI CCCAGC 1 cut(s) 333
HapII CCGG 1 cut(s) 65
Hin1II CATG 2 cut(s) 30, 288
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HindIII AAGCTT 1 cut(s) 424
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 3 cut(s) 65, 157, 240
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 408, 443
HpyCH4III ACNGT 1 cut(s) 203
Hsp92II CATG 2 cut(s) 30, 288
Kpn2I TCCGGA 1 cut(s) 64
Kzo9I GATC 2 cut(s) 22, 388
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 8 cut(s) 78, 240, 280, 296, 307, 315, 354, 403
Lsp1109I GCAGC 2 cut(s) 178, 396
LweI GCATC 1 cut(s) 233
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 24, 390
MboI GATC 2 cut(s) 22, 388
MboII GAAGA 3 cut(s) 53, 228, 406
MluCI AATT 5 cut(s) 37, 187, 253, 266, 442
MmeI TCCRAC 2 cut(s) 103, 295
MnlI CCTC 5 cut(s) 61, 282, 311, 356, 447
MroI TCCGGA 1 cut(s) 64
MseI TTAA 1 cut(s) 445
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 295
MvaI CCWGG 1 cut(s) 295
NcoI CCATGG 1 cut(s) 284
NdeII GATC 2 cut(s) 22, 388
NlaIII CATG 2 cut(s) 30, 288
NmuCI GTSAC 1 cut(s) 229
PkrI GCNGC 3 cut(s) 79, 168, 386
Psp6I CCWGG 1 cut(s) 293
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 1 cut(s) 293
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 2 cut(s) 225, 335
RsaNI GTAC 2 cut(s) 224, 334
SaqAI TTAA 1 cut(s) 445
SatI GCNGC 3 cut(s) 78, 167, 385
Sau3AI GATC 2 cut(s) 22, 388
ScrFI CCNGG 1 cut(s) 295
SfaNI GCATC 1 cut(s) 233
SfcI CTRYAG 1 cut(s) 96
Sse9I AATT 5 cut(s) 37, 187, 253, 266, 442
SsiI CCGC 3 cut(s) 77, 114, 382
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 293
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 203
TasI AATT 5 cut(s) 37, 187, 253, 266, 442
TauI GCSGC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 166, 384
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 390
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 1 cut(s) 208
XapI RAATTY 1 cut(s) 187
XbaI TCTAGA 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 1 cut(s) 291
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.