Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8409487.1

Orthogroup ID

OG0018487

Physical Location & Seq

Genomic Coordinates Reverse (-)

18 .. 1262

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8409487.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgagtgactgtattcaacctaaaactgaggtggctggccgtatcaatgaaaagtatgatccttgcactgaggcacactcagttgtatacttcaatctacccgaggttcaaaaggcccttcatgttgatcgactccatgcaccatctaaatgggcaacatgcagtgaggtggtgtacgctacttggaaggattctcctaggacagtgctggatgtctaccgggagttgataatttcaggacttcgtatatggatgttcagtggtgatacagatgcggtaatcccagttacatctacccgatacagtatagattcccttaagcttccaactgttaaaccttggcgtccctggtatgatgatgggcaggttggaggctggactcaagaatatgctgggctgaatttcgtatcagtgaggggagcaggccatgaagtccctctgcacagacccaagctagctctcgcactcgtcaaaaacttcttgtcaggatcctcaatgccatcatcacagcttctcagtgactcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

175

Amino Acids

19.59

Weight (kDa)

6.51

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018487)

Species	Orthologous Gene IDs
malus_domestica	MD15G1087200.v1.1
rosa_chinensis	RchiOBHm_Chr6g0307101
rosa_multiflora	Rmu_co8409487.1_g000001 Rmu_sc0001776.1_g000002
rosa_roxburghii	Rroxscaffold_7G00161160 Rroxscaffold_7G00161170
rosa_rugosa	Rorug06G0356900
rosa_samantha	Rh6AG467500 Rh6BG432700 Rh6DG469500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	355
AccI	GTMKAC	2 cut(s)	87, 216
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	3 cut(s)	53, 483, 496
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	400
AcyI	GRCGYC	1 cut(s)	343
AfaI	GTAC	1 cut(s)	176
AflII	CTTAAG	1 cut(s)	317
AgsI	TTSAA	3 cut(s)	17, 94, 110
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	4 cut(s)	322, 454, 458, 511
AluI	AGCT	4 cut(s)	322, 454, 458, 511
AlwI	GGATC	3 cut(s)	53, 483, 496
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	3 cut(s)	37, 114, 424
ApoI	RAATTY	1 cut(s)	400
AspA2I	CCTAGG	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	275
AsuNHI	GCTAGC	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	101
AvrII	CCTAGG	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	488
BccI	CCATC	3 cut(s)	151, 353, 508
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	221
BfaI	CTAG	2 cut(s)	198, 455
BfrI	CTTAAG	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	355
BlnI	CCTAGG	1 cut(s)	197
Bme1390I	CCNGG	2 cut(s)	221, 349
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	2 cut(s)	221, 349
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	262
BmtI	GCTAGC	1 cut(s)	458
BmuI	ACTGGG	1 cut(s)	278
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	343
BsaJI	CCNNGG	4 cut(s)	102, 197, 338, 347
Bse1I	ACTGG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	4 cut(s)	102, 197, 338, 347
BseGI	GGATG	2 cut(s)	217, 258
BseMII	CTCAG	3 cut(s)	18, 60, 93
BseNI	ACTGG	1 cut(s)	284
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	425
BshFI	GGCC	3 cut(s)	39, 116, 426
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	2 cut(s)	330, 419
BsmFI	GGGAC	2 cut(s)	330, 419
BsnI	GGCC	3 cut(s)	39, 116, 426
BsoBI	CYCGRG	1 cut(s)	101
Bsp143I	GATC	3 cut(s)	58, 127, 488
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	3 cut(s)	39, 116, 426
BspCNI	CTCAG	4 cut(s)	19, 61, 92, 528
BspLI	GGNNCC	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	355
BspOI	GCTAGC	1 cut(s)	458
BspPI	GGATC	3 cut(s)	53, 483, 496
BspTI	CTTAAG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	4 cut(s)	102, 197, 338, 347
BssMI	GATC	3 cut(s)	58, 127, 488
BssNAI	GTATAC	1 cut(s)	88
BssNI	GRCGYC	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	197, 338
Bst1107I	GTATAC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	4 cut(s)	11, 205, 305, 331
BstACI	GRCGYC	1 cut(s)	343
BstAFI	CTTAAG	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	37, 424, 456
BstDEI	CTNAG	5 cut(s)	27, 69, 79, 515, 525
BstF5I	GGATG	2 cut(s)	217, 258
BstKTI	GATC	3 cut(s)	61, 130, 491
BstMBI	GATC	3 cut(s)	58, 127, 488
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	1 cut(s)	162
BstSCI	CCNGG	2 cut(s)	219, 347
BstX2I	RGATCY	1 cut(s)	488
BstXI	CCANNNNNNTGG	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	488
BstZ17I	GTATAC	1 cut(s)	88
BsuRI	GGCC	3 cut(s)	39, 116, 426
BtsCI	GGATG	2 cut(s)	217, 258
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	6 cut(s)	66, 169, 210, 265, 417, 523
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	3 cut(s)	37, 424, 456
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	4 cut(s)	122, 137, 159, 428
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	5 cut(s)	27, 69, 79, 515, 525
DpnI	GATC	3 cut(s)	60, 129, 490
DpnII	GATC	3 cut(s)	58, 127, 488
EaeI	YGGCCR	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	197, 338
Eco88I	CYCGRG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	2 cut(s)	197, 338
ErhI	CCWWGG	2 cut(s)	197, 338
FaeI	CATG	4 cut(s)	125, 140, 162, 431
FaqI	GGGAC	2 cut(s)	330, 419
FatI	CATG	4 cut(s)	121, 136, 158, 427
FblI	GTMKAC	2 cut(s)	87, 216
FokI	GGATG	2 cut(s)	224, 265
FspBI	CTAG	2 cut(s)	198, 455
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	3 cut(s)	39, 116, 426
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	343
Hin1II	CATG	4 cut(s)	125, 140, 162, 431
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	5 cut(s)	132, 191, 311, 379, 521
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	3 cut(s)	88, 175, 217
Hpy188III	TCNNGA	3 cut(s)	237, 383, 486
Hpy8I	GTNNAC	3 cut(s)	88, 175, 217
HpyAV	CCTTC	2 cut(s)	128, 181
HpyCH4III	ACNGT	4 cut(s)	11, 205, 305, 331
HpyCH4V	TGCA	4 cut(s)	66, 140, 162, 442
HpyF3I	CTNAG	5 cut(s)	27, 69, 79, 515, 525
Hsp92I	GRCGYC	1 cut(s)	343
Hsp92II	CATG	4 cut(s)	125, 140, 162, 431
Kzo9I	GATC	3 cut(s)	58, 127, 488
LmnI	GCTCC	1 cut(s)	419
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	2 cut(s)	198, 455
MaeIII	GTNAC	3 cut(s)	5, 286, 518
MalI	GATC	3 cut(s)	60, 129, 490
MboI	GATC	3 cut(s)	58, 127, 488
MflI	RGATCY	1 cut(s)	488
MluCI	AATT	2 cut(s)	231, 400
MlyI	GAGTC	3 cut(s)	126, 373, 515
MmeI	TCCRAC	2 cut(s)	349, 350
MnlI	CCTC	8 cut(s)	22, 64, 97, 160, 365, 408, 447, 502
MseI	TTAA	2 cut(s)	318, 333
MslI	CAYNNNNRTG	1 cut(s)	148
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	2 cut(s)	221, 349
MvaI	CCWGG	1 cut(s)	349
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	3 cut(s)	58, 127, 488
NheI	GCTAGC	1 cut(s)	454
NlaIII	CATG	4 cut(s)	125, 140, 162, 431
NlaIV	GGNNCC	1 cut(s)	490
NmuCI	GTSAC	2 cut(s)	5, 518
NspI	RCATGY	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	191, 311
PleI	GAGTC	3 cut(s)	126, 373, 515
PpsI	GAGTC	3 cut(s)	126, 373, 515
Psp6I	CCWGG	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	488
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	318, 333
Sau3AI	GATC	3 cut(s)	58, 127, 488
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	3 cut(s)	126, 373, 515
ScrFI	CCNGG	2 cut(s)	221, 349
SfaNI	GCATC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	148
SmlI	CTYRAG	2 cut(s)	317, 381
SmoI	CTYRAG	2 cut(s)	317, 381
Sse9I	AATT	2 cut(s)	231, 400
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	2 cut(s)	198, 455
StyD4I	CCNGG	2 cut(s)	219, 347
StyI	CCWWGG	2 cut(s)	197, 338
TaaI	ACNGT	4 cut(s)	11, 205, 305, 331
TaqI	TCGA	1 cut(s)	130
TasI	AATT	2 cut(s)	231, 400
TfiI	GAWTC	2 cut(s)	191, 311
Tru1I	TTAA	2 cut(s)	318, 333
Tru9I	TTAA	2 cut(s)	318, 333
TscAI	CASTG	6 cut(s)	73, 169, 210, 265, 417, 523
TseFI	GTSAC	2 cut(s)	5, 518
Tsp45I	GTSAC	2 cut(s)	5, 518
TspDTI	ATGAA	3 cut(s)	63, 110, 444
TspRI	CASTG	6 cut(s)	73, 169, 210, 265, 417, 523
Vha464I	CTTAAG	1 cut(s)	317
XapI	RAATTY	1 cut(s)	400
XceI	RCATGY	1 cut(s)	162
XmaJI	CCTAGG	1 cut(s)	197
XmiI	GTMKAC	2 cut(s)	87, 216
XspI	CTAG	2 cut(s)	198, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.