Rh6AG467500

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018487
Physical Location & Seq
Forward (+)
64988015 .. 64994448
6434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG467500.1

Sequence Viewer

Length: 252 bp
ATGCTCGAGTACCGGCCAGTCACGGCTTCTAGATACTCCATAAACACACTAAGCTTACCAGTTGGGACTCCATGGAGGCCGTGGAACTCTAACACGGAGGAGGTTGGAGGATATGTGGTTGGTTACAAGGGGTTGACATTTGTAACAGTAAGAGGAGCTGGCCATATGGTTCCGAGCTACCAACCGCAGCGATCACTCGTCTTAATCTCATCGTTCCTTCAGGGGACACTTCCTCCGGCTCCTCCTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

83

Amino Acids

9.09

Weight (kDa)

9.69

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 6 - 75 2.9e-18 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018487)

Species Orthologous Gene IDs
malus_domestica MD15G1087200.v1.1
rosa_chinensis RchiOBHm_Chr6g0307101
rosa_multiflora Rmu_co8409487.1_g000001 Rmu_sc0001776.1_g000002
rosa_roxburghii Rroxscaffold_7G00161160 Rroxscaffold_7G00161170
rosa_rugosa Rorug06G0356900
rosa_samantha Rh6AG467500 Rh6BG432700 Rh6DG469500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 185
AcoI YGGCCR 2 cut(s) 14, 160
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 11
AluBI AGCT 3 cut(s) 54, 158, 177
AluI AGCT 3 cut(s) 54, 158, 177
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 3 cut(s) 14, 77, 160
ApeKI GCWGC 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 5
BalI TGGCCA 1 cut(s) 162
BbvI GCAGC 1 cut(s) 199
BceAI ACGGC 2 cut(s) 39, 64
BfaI CTAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
BmeT110I CYCGRG 1 cut(s) 5
BmiI GGNNCC 2 cut(s) 171, 240
BsaJI CCNNGG 2 cut(s) 71, 80
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 217, 247
Bse118I RCCGGY 1 cut(s) 12
Bse1I ACTGG 2 cut(s) 17, 59
BseDI CCNNGG 2 cut(s) 71, 80
BseNI ACTGG 2 cut(s) 17, 59
BseRI GAGGAG 4 cut(s) 113, 168, 231, 234
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 3 cut(s) 16, 79, 162
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 2 cut(s) 13, 236
BslFI GGGAC 2 cut(s) 79, 238
BsmFI GGGAC 2 cut(s) 79, 238
BsnI GGCC 3 cut(s) 16, 79, 162
BsoBI CYCGRG 1 cut(s) 5
Bsp143I GATC 1 cut(s) 191
Bsp19I CCATGG 1 cut(s) 71
BspACI CCGC 1 cut(s) 185
BspANI GGCC 3 cut(s) 16, 79, 162
BspLI GGNNCC 2 cut(s) 171, 240
BsrFI RCCGGY 1 cut(s) 12
BsrI ACTGG 2 cut(s) 17, 59
BssAI RCCGGY 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 71, 80
BssMI GATC 1 cut(s) 191
BssT1I CCWWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 2 cut(s) 71, 80
BstKTI GATC 1 cut(s) 194
BstMBI GATC 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 199
BsuRI GGCC 3 cut(s) 16, 79, 162
BtgI CCRYGG 2 cut(s) 71, 80
Cac8I GCNNGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 12
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 72
CviJI RGCY 8 cut(s) 16, 26, 54, 79, 158, 162, 177, 239
CviKI_1 RGCY 8 cut(s) 16, 26, 54, 79, 158, 162, 177, 239
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
EaeI YGGCCR 2 cut(s) 14, 160
Eco130I CCWWGG 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 1 cut(s) 75
FaiI YATR 6 cut(s) 41, 73, 114, 165, 167, 250
FaqI GGGAC 2 cut(s) 79, 238
FatI CATG 1 cut(s) 71
FauNDI CATATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 188
HaeIII GGCC 3 cut(s) 16, 79, 162
HapII CCGG 2 cut(s) 13, 236
Hin1II CATG 1 cut(s) 75
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 1 cut(s) 67
HpaII CCGG 2 cut(s) 13, 236
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 148
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 1 cut(s) 75
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 2 cut(s) 155, 244
LpnPI CCDG 5 cut(s) 26, 30, 72, 144, 206
Lsp1109I GCAGC 1 cut(s) 199
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 3 cut(s) 19, 122, 142
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MlsI TGGCCA 1 cut(s) 162
MluNI TGGCCA 1 cut(s) 162
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 7 cut(s) 69, 91, 94, 101, 146, 243, 252
Mox20I TGGCCA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 162
MseI TTAA 1 cut(s) 203
Msp20I TGGCCA 1 cut(s) 162
MspI CCGG 2 cut(s) 13, 236
NcoI CCATGG 1 cut(s) 71
NdeI CATATG 1 cut(s) 165
NdeII GATC 1 cut(s) 191
NlaIII CATG 1 cut(s) 75
NlaIV GGNNCC 2 cut(s) 171, 240
NmuCI GTSAC 1 cut(s) 19
PaeR7I CTCGAG 1 cut(s) 5
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 171, 240
PspXI VCTCGAGB 1 cut(s) 5
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 1 cut(s) 191
SchI GAGTC 1 cut(s) 61
SetI ASST 4 cut(s) 56, 105, 160, 179
Sfr274I CTCGAG 1 cut(s) 5
SlaI CTCGAG 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SsiI CCGC 1 cut(s) 185
SspMI CTAG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 6
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 19
TspGWI ACGGA 1 cut(s) 110
XbaI TCTAGA 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
XhoI CTCGAG 1 cut(s) 5
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.