Rroxscaffold_7G00161170

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018487
Physical Location & Seq
Reverse (-)
3980828 .. 3985098
4271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161170.1

Sequence Viewer

Length: 927 bp
ATGGATGAAAAGCATACCGAATTGACGGAACCGAGCCGGAACCGCATCATGACGGCGATTCTGTGGCGGTTCTGTCTCGGATTGAGTTGCGGGATTCGTGGTGAGCCATGGGTATGGGTTGACGGAGACGGAGGGGTGGTGGTGTCCTACGCATGGTCGGATCCAACTCCGAAGCAAAGCGAAAAACGGGCTCTTCATCTCCATCTGCGATCGTTGAAACCGATTGACGCCGAATCGTACCGAATCGATCGGTTTTGGGACCAATCGTTGCTTTTGGACTGCATCATCTATGAGATTTTTTGGCCTCCTATGGAACATATTTTCTCGAGAAGTTCACAAGAAGGACCAGGATGCTCATCTCTTGGGTATGGAGCCATGGAAGAGATAGGACCTTCCAGGATTGGGAATGCTTGGATCGATTTTATTACTGGGAGCTTGGGTTGGTTTGATTATTTGTGGAGACATGCTCTGAACTCTGACGAAACAAATGCCGGAATACACCAATACTGTAACTTAACCGTAGATGACGATAATTGTGGTAAATATAGAGTTCTGTCAGACAATGAGTATGGTTACATTGATGAATATAACATCTGCGCTCCTTTTTGCAACAAATCATCAGCCGTGGCCTCAACTGGTTCAGCTAATGATTTTGATCTATGCTCAAACAACTATGTCCAGATCTATCTAAATCTTAAGGAGGTGCAAGCAGCTCTTCATGTAAACCCTACAGTATGGTTAGCTTGCAGTGGTAAAACCGAATGGATGGACAGCCCAATGACTGTCCTCCCTACAATACAAGAGCTCATAGGGAGTGGGATAAGCTTGTGGCTCTACAGGCCATGGTACTCTGATGAAGAGGTTGGAGGATATGTGGTTGGACACATGGGGCTGAAATTTGCGACCCGTAAGAGGAGCTGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

308

Amino Acids

35.0

Weight (kDa)

4.96

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 134 - 280 5.9e-16 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018487)

Species Orthologous Gene IDs
malus_domestica MD15G1087200.v1.1
rosa_chinensis RchiOBHm_Chr6g0307101
rosa_multiflora Rmu_co8409487.1_g000001 Rmu_sc0001776.1_g000002
rosa_roxburghii Rroxscaffold_7G00161160 Rroxscaffold_7G00161170
rosa_rugosa Rorug06G0356900
rosa_samantha Rh6AG467500 Rh6BG432700 Rh6DG469500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 43, 67, 90
AclWI GGATC 3 cut(s) 155, 168, 422
AcoI YGGCCR 1 cut(s) 920
AcsI RAATTY 1 cut(s) 896
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 2 cut(s) 239, 848
AfiI CCNNNNNNNGG 3 cut(s) 153, 402, 912
AflII CTTAAG 1 cut(s) 695
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 2 cut(s) 346, 395
AluBI AGCT 7 cut(s) 435, 644, 713, 743, 805, 825, 918
AluI AGCT 7 cut(s) 435, 644, 713, 743, 805, 825, 918
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 3 cut(s) 80, 120, 454
AlwI GGATC 3 cut(s) 155, 168, 422
Ama87I CYCGRG 1 cut(s) 325
AoxI GGCC 4 cut(s) 302, 627, 839, 920
ApeKI GCWGC 1 cut(s) 710
ApoI RAATTY 1 cut(s) 896
AspLEI GCGC 1 cut(s) 599
AspS9I GGNCC 3 cut(s) 259, 344, 389
AsuHPI GGTGA 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 325
AvaII GGWCC 3 cut(s) 259, 344, 389
BalI TGGCCA 1 cut(s) 922
BamHI GGATCC 1 cut(s) 160
BanII GRGCYC 2 cut(s) 193, 807
Bbv12I GWGCWC 1 cut(s) 807
BbvI GCAGC 1 cut(s) 722
BccI CCATC 2 cut(s) 210, 760
BceAI ACGGC 2 cut(s) 69, 608
BcgI CGANNNNNNTGC 2 cut(s) 470, 504
BciT130I CCWGG 2 cut(s) 348, 397
BcoDI GTCTC 3 cut(s) 80, 120, 454
BfmI CTRYAG 2 cut(s) 729, 835
BfrI CTTAAG 1 cut(s) 695
BglII AGATCT 1 cut(s) 681
BisI GCNGC 1 cut(s) 711
BlsI GCNGC 1 cut(s) 712
Bme1390I CCNGG 2 cut(s) 348, 397
Bme18I GGWCC 3 cut(s) 259, 344, 389
BmeT110I CYCGRG 1 cut(s) 325
BmgT120I GGNCC 3 cut(s) 259, 344, 389
BmiI GGNNCC 5 cut(s) 30, 41, 162, 260, 373
BmrFI CCNGG 2 cut(s) 348, 397
BmrI ACTGGG 1 cut(s) 438
BmsI GCATC 3 cut(s) 54, 291, 341
BmuI ACTGGG 1 cut(s) 438
BplI GAGNNNNNCTC 2 cut(s) 451, 483
Bsa29I ATCGAT 2 cut(s) 246, 417
BsaBI GATNNNNATC 2 cut(s) 355, 654
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 4 cut(s) 107, 375, 624, 842
BsaXI ACNNNNNCTCC 6 cut(s) 123, 153, 424, 454, 858, 888
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 402, 912
Bse1I ACTGG 2 cut(s) 433, 640
Bse8I GATNNNNATC 2 cut(s) 355, 654
BseBI CCWGG 2 cut(s) 348, 397
BseCI ATCGAT 2 cut(s) 246, 417
BseDI CCNNGG 4 cut(s) 107, 375, 624, 842
BseGI GGATG 3 cut(s) 10, 356, 771
BseJI GATNNNNATC 2 cut(s) 355, 654
BseLI CCNNNNNNNGG 3 cut(s) 153, 402, 912
BseNI ACTGG 2 cut(s) 433, 640
BseXI GCAGC 1 cut(s) 722
Bsh1285I CGRYCG 2 cut(s) 212, 250
BshFI GGCC 4 cut(s) 304, 629, 841, 922
BshVI ATCGAT 2 cut(s) 246, 417
BsiEI CGRYCG 2 cut(s) 212, 250
BsiHKAI GWGCWC 1 cut(s) 807
BsiHKCI CYCGRG 1 cut(s) 325
BsiSI CCGG 2 cut(s) 37, 492
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 3 cut(s) 153, 402, 912
BsmAI GTCTC 3 cut(s) 80, 120, 454
BsmBI CGTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 4 cut(s) 304, 629, 841, 922
BsoBI CYCGRG 1 cut(s) 325
Bsp1286I GDGCHC 2 cut(s) 193, 807
Bsp143I GATC 6 cut(s) 160, 209, 247, 414, 655, 681
Bsp19I CCATGG 3 cut(s) 107, 375, 842
BspACI CCGC 3 cut(s) 43, 67, 90
BspANI GGCC 4 cut(s) 304, 629, 841, 922
BspDI ATCGAT 2 cut(s) 246, 417
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 5 cut(s) 30, 41, 162, 260, 373
BspPI GGATC 3 cut(s) 155, 168, 422
BspQI GCTCTTC 2 cut(s) 198, 720
BspTI CTTAAG 1 cut(s) 695
BsrI ACTGG 2 cut(s) 433, 640
BssECI CCNNGG 4 cut(s) 107, 375, 624, 842
BssMI GATC 6 cut(s) 160, 209, 247, 414, 655, 681
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 3 cut(s) 107, 375, 842
Bst2UI CCWGG 2 cut(s) 348, 397
Bst4CI ACNGT 4 cut(s) 509, 520, 733, 784
Bst6I CTCTTC 4 cut(s) 198, 375, 720, 852
BstACI GRCGYC 1 cut(s) 228
BstAFI CTTAAG 1 cut(s) 695
BstC8I GCNNGC 3 cut(s) 708, 745, 920
BstDSI CCRYGG 4 cut(s) 107, 375, 624, 842
BstF5I GGATG 3 cut(s) 10, 356, 771
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 6 cut(s) 163, 212, 250, 417, 658, 684
BstMAI GTCTC 3 cut(s) 80, 120, 454
BstMBI GATC 6 cut(s) 160, 209, 247, 414, 655, 681
BstMCI CGRYCG 2 cut(s) 212, 250
BstMWI GCNNNNNNNGC 2 cut(s) 42, 838
BstNI CCWGG 2 cut(s) 348, 397
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 2 cut(s) 346, 395
BstSFI CTRYAG 2 cut(s) 729, 835
BstV1I GCAGC 1 cut(s) 722
BstX2I RGATCY 2 cut(s) 160, 681
BstXI CCANNNNNNTGG 1 cut(s) 114
BstYI RGATCY 2 cut(s) 160, 681
Bsu15I ATCGAT 2 cut(s) 246, 417
BsuRI GGCC 4 cut(s) 304, 629, 841, 922
BsuTUI ATCGAT 2 cut(s) 246, 417
BtgI CCRYGG 4 cut(s) 107, 375, 624, 842
BtsCI GGATG 3 cut(s) 10, 356, 771
BtsI GCAGTG 1 cut(s) 754
BtsIMutI CAGTG 1 cut(s) 754
Cac8I GCNNGC 3 cut(s) 708, 745, 920
CciI TCATGA 1 cut(s) 48
CfoI GCGC 1 cut(s) 599
Cfr13I GGNCC 3 cut(s) 259, 344, 389
ClaI ATCGAT 2 cut(s) 246, 417
CseI GACGC 1 cut(s) 236
Csp6I GTAC 2 cut(s) 238, 847
CviAII CATG 9 cut(s) 49, 108, 153, 376, 464, 719, 843, 886, 924
CviQI GTAC 2 cut(s) 238, 847
DpnI GATC 6 cut(s) 162, 211, 249, 416, 657, 683
DpnII GATC 6 cut(s) 160, 209, 247, 414, 655, 681
EaeI YGGCCR 1 cut(s) 920
Eam1104I CTCTTC 4 cut(s) 198, 375, 720, 852
EarI CTCTTC 4 cut(s) 198, 375, 720, 852
Ecl136II GAGCTC 1 cut(s) 805
Eco130I CCWWGG 3 cut(s) 107, 375, 842
Eco24I GRGCYC 2 cut(s) 193, 807
Eco47I GGWCC 3 cut(s) 259, 344, 389
Eco53kI GAGCTC 1 cut(s) 805
Eco88I CYCGRG 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 805
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 346, 395
EcoT14I CCWWGG 3 cut(s) 107, 375, 842
EcoT38I GRGCYC 2 cut(s) 193, 807
ErhI CCWWGG 3 cut(s) 107, 375, 842
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 9 cut(s) 52, 111, 156, 379, 467, 722, 846, 889, 927
FalI AAGNNNNNCTT 2 cut(s) 699, 731
FaqI GGGAC 1 cut(s) 272
FatI CATG 9 cut(s) 48, 107, 152, 375, 463, 718, 842, 885, 923
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 711
FokI GGATG 3 cut(s) 17, 363, 778
FriOI GRGCYC 2 cut(s) 193, 807
Fsp4HI GCNGC 1 cut(s) 711
GlaI GCGC 1 cut(s) 598
GluI GCNGC 1 cut(s) 711
HaeIII GGCC 4 cut(s) 304, 629, 841, 922
HapII CCGG 2 cut(s) 37, 492
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 599
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 9 cut(s) 52, 111, 156, 379, 467, 722, 846, 889, 927
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 823
HinfI GANTC 4 cut(s) 58, 94, 233, 243
HpaII CCGG 2 cut(s) 37, 492
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 3 cut(s) 121, 335, 724
Hpy188I TCNGA 7 cut(s) 80, 160, 171, 471, 478, 559, 853
Hpy188III TCNNGA 4 cut(s) 49, 325, 327, 679
Hpy8I GTNNAC 3 cut(s) 121, 335, 724
HpyAV CCTTC 2 cut(s) 335, 402
HpyCH4III ACNGT 4 cut(s) 509, 520, 733, 784
HpyCH4V TGCA 4 cut(s) 282, 609, 706, 747
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 838
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 9 cut(s) 52, 111, 156, 379, 467, 722, 846, 889, 927
HspAI GCGC 1 cut(s) 597
Kzo9I GATC 6 cut(s) 160, 209, 247, 414, 655, 681
LguI GCTCTTC 2 cut(s) 198, 720
LmnI GCTCC 4 cut(s) 371, 432, 604, 915
Lsp1109I GCAGC 1 cut(s) 722
LweI GCATC 3 cut(s) 54, 291, 341
MaeIII GTNAC 2 cut(s) 509, 572
MalI GATC 6 cut(s) 162, 211, 249, 416, 657, 683
MboI GATC 6 cut(s) 160, 209, 247, 414, 655, 681
MboII GAAGA 4 cut(s) 185, 392, 707, 869
MflI RGATCY 2 cut(s) 160, 681
MhlI GDGCHC 2 cut(s) 193, 807
MlsI TGGCCA 1 cut(s) 922
MluCI AATT 3 cut(s) 20, 532, 896
MluNI TGGCCA 1 cut(s) 922
MmeI TCCRAC 4 cut(s) 138, 188, 844, 859
MnlI CCTC 8 cut(s) 125, 315, 640, 694, 797, 853, 860, 906
Mox20I TGGCCA 1 cut(s) 922
MscI TGGCCA 1 cut(s) 922
MseI TTAA 2 cut(s) 515, 696
MslI CAYNNNNRTG 1 cut(s) 112
Msp20I TGGCCA 1 cut(s) 922
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 2 cut(s) 37, 492
MspR9I CCNGG 2 cut(s) 348, 397
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 2 cut(s) 348, 397
MwoI GCNNNNNNNGC 2 cut(s) 42, 838
NcoI CCATGG 3 cut(s) 107, 375, 842
NdeII GATC 6 cut(s) 160, 209, 247, 414, 655, 681
NlaIII CATG 9 cut(s) 52, 111, 156, 379, 467, 722, 846, 889, 927
NlaIV GGNNCC 5 cut(s) 30, 41, 162, 260, 373
NspI RCATGY 1 cut(s) 467
PaeR7I CTCGAG 1 cut(s) 325
PagI TCATGA 1 cut(s) 48
PciSI GCTCTTC 2 cut(s) 198, 720
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PctI GAATGC 1 cut(s) 412
PfeI GAWTC 4 cut(s) 58, 94, 233, 243
PfoI TCCNGGA 1 cut(s) 395
PkrI GCNGC 1 cut(s) 712
Ple19I CGATCG 2 cut(s) 212, 250
PpuMI RGGWCCY 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 807
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 346, 395
PspGI CCWGG 2 cut(s) 346, 395
PspN4I GGNNCC 5 cut(s) 30, 41, 162, 260, 373
PspPI GGNCC 3 cut(s) 259, 344, 389
PspPPI RGGWCCY 1 cut(s) 389
PsuI RGATCY 2 cut(s) 160, 681
PvuI CGATCG 2 cut(s) 212, 250
RsaI GTAC 2 cut(s) 239, 848
RsaNI GTAC 2 cut(s) 238, 847
RseI CAYNNNNRTG 1 cut(s) 112
SacI GAGCTC 1 cut(s) 807
SapI GCTCTTC 2 cut(s) 198, 720
SaqAI TTAA 2 cut(s) 515, 696
SatI GCNGC 1 cut(s) 711
Sau3AI GATC 6 cut(s) 160, 209, 247, 414, 655, 681
Sau96I GGNCC 3 cut(s) 259, 344, 389
ScrFI CCNGG 2 cut(s) 348, 397
SduI GDGCHC 2 cut(s) 193, 807
SfaNI GCATC 3 cut(s) 54, 291, 341
SfcI CTRYAG 2 cut(s) 729, 835
Sfr274I CTCGAG 1 cut(s) 325
SinI GGWCC 3 cut(s) 259, 344, 389
SlaI CTCGAG 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 112
SmlI CTYRAG 2 cut(s) 325, 695
SmoI CTYRAG 2 cut(s) 325, 695
Sse9I AATT 3 cut(s) 20, 532, 896
SsiI CCGC 3 cut(s) 43, 67, 90
SstI GAGCTC 1 cut(s) 807
StyD4I CCNGG 2 cut(s) 346, 395
StyI CCWWGG 3 cut(s) 107, 375, 842
TaaI ACNGT 4 cut(s) 509, 520, 733, 784
TaqI TCGA 3 cut(s) 246, 326, 417
TasI AATT 3 cut(s) 20, 532, 896
TfiI GAWTC 4 cut(s) 58, 94, 233, 243
Tru1I TTAA 2 cut(s) 515, 696
Tru9I TTAA 2 cut(s) 515, 696
TscAI CASTG 1 cut(s) 754
TseI GCWGC 1 cut(s) 710
TspDTI ATGAA 5 cut(s) 21, 185, 597, 707, 870
TspGWI ACGGA 3 cut(s) 41, 138, 144
TspRI CASTG 1 cut(s) 754
Vha464I CTTAAG 1 cut(s) 695
VpaK11BI GGWCC 3 cut(s) 259, 344, 389
XapI RAATTY 1 cut(s) 896
XceI RCATGY 1 cut(s) 467
XhoI CTCGAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.