Rh6BG432700

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018487
Physical Location & Seq
Reverse (-)
65312678 .. 65314264
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG432700.1

Sequence Viewer

Length: 1068 bp
ATGGAAGAATTGGGAGCTTTCAGAGTTAACAGTGATGGAAAGACATTATTCCGGAACGATCATGCTTGGAACAATGTGGCGAATGTACTGTTCTTGGAGTCTCCGGCAGGGGTTGGGTTCTCTTATTCAAACAACAAATCGGACTACGAAAACGTTGGTGACAAGAGAACGGCGAAAGACTCGTACACATTTCTTGTAAACTGGCTAGAGAGATTTCCTCAATACAAGAGTAGAGATTTCTTCATAATTGGAGAGAGCTACGCTGGTCATTACGCACCTCAACTTGCTCACACCATTCTCTCAAAGAACAACGCCACAAAGCAAACAAAAATCAATCTCAAAGGCATTGCGATTGGGAATCCTTGGATCGATGACAAGGATGGCACACTAGGTGGTTATGATTATTTGTGGACACATGATTTGAACTCGGACGAAACTCATGCCGGAATACAAAAATATTGTGACTTTGCCTCGGGTAATATATCGCAGACGTGTATTATCTATATGAACAAATCAGCCGACGAGCTTGGAGACATTGATATTTACGACATCTACGCTCCACAGTGCAACATATCATCTGGATCCAAATATGTCTCAGAAGCTCCTTCTGTTAATAGTTTTGATCCATGCTCTGATAAATATGTGGAGGACTATCTAAACCTCGCCGAGGTGAAAGCAGCTCTTCATGTTAAACCCACAAACTGGACAGCTTGCAGTGGTATAGGATGGACAGACGGCCCAACAACCATTCTACCCAGAATAAAGCAGCTTATAGCAAGTGGGATGAGTTTATGGATATACAGTGGAGACACCGATGCAAGTGTGCCAGGCACGTCCTCTAGATACTCCATAAACAGGCTCAAGCTACCGATTGAGAAGCCATGGCGGCCATGGAACTCTAATGGAGAGGTTGGAGGATATGTGATTGGCTACAGGGGGTTAACATTTGCTACGGTAAGGGGAGCTGGCCATATGGTTCCCAGCTACCAACCACAGCGAGCACTCACCTTGATCTCATCATTTCTTCAAGGGACGCTTCCTCCTGCCTTCCCAGCCAAATCCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

355

Amino Acids

39.31

Weight (kDa)

5.99

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 2 - 344 7.1e-110 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018487)

Species Orthologous Gene IDs
malus_domestica MD15G1087200.v1.1
rosa_chinensis RchiOBHm_Chr6g0307101
rosa_multiflora Rmu_co8409487.1_g000001 Rmu_sc0001776.1_g000002
rosa_roxburghii Rroxscaffold_7G00161160 Rroxscaffold_7G00161170
rosa_rugosa Rorug06G0356900
rosa_samantha Rh6AG467500 Rh6BG432700 Rh6DG469500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 702
AccIII TCCGGA 1 cut(s) 51
AciI CCGC 1 cut(s) 886
AclI AACGTT 1 cut(s) 153
AclWI GGATC 4 cut(s) 374, 576, 589, 617
AcoI YGGCCR 2 cut(s) 887, 967
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 2 cut(s) 87, 185
AfiI CCNNNNNNNGG 3 cut(s) 667, 702, 855
AflIII ACRYGT 1 cut(s) 491
AgsI TTSAA 3 cut(s) 129, 424, 1028
AjiI CACGTC 2 cut(s) 492, 834
AjnI CCWGG 1 cut(s) 826
Alw21I GWGCWC 1 cut(s) 1003
Alw26I GTCTC 4 cut(s) 105, 525, 598, 801
AlwI GGATC 4 cut(s) 374, 576, 589, 617
Ama87I CYCGRG 1 cut(s) 472
Aor13HI TCCGGA 1 cut(s) 51
AoxI GGCC 3 cut(s) 736, 887, 967
ApeKI GCWGC 2 cut(s) 677, 766
ArsI GACNNNNNNTTYG 2 cut(s) 403, 435
AspS9I GGNCC 1 cut(s) 737
AsuHPI GGTGA 3 cut(s) 170, 682, 997
AvaI CYCGRG 1 cut(s) 472
BalI TGGCCA 1 cut(s) 969
BamHI GGATCC 1 cut(s) 581
Bbv12I GWGCWC 1 cut(s) 1003
BbvI GCAGC 2 cut(s) 689, 778
BccI CCATC 3 cut(s) 29, 374, 720
BceAI ACGGC 2 cut(s) 186, 751
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BciT130I CCWGG 1 cut(s) 828
BcoDI GTCTC 4 cut(s) 105, 525, 598, 801
BfaI CTAG 3 cut(s) 206, 389, 840
BfmI CTRYAG 1 cut(s) 931
BglI GCCNNNNNGGC 1 cut(s) 886
BisI GCNGC 3 cut(s) 678, 767, 887
BlsI GCNGC 3 cut(s) 679, 768, 888
Bme1390I CCNGG 1 cut(s) 828
BmeT110I CYCGRG 1 cut(s) 472
BmgBI CACGTC 2 cut(s) 492, 834
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 2 cut(s) 583, 978
BmrFI CCNGG 1 cut(s) 828
BmsI GCATC 1 cut(s) 805
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BpuEI CTTGAG 1 cut(s) 845
Bsa29I ATCGAT 1 cut(s) 369
BsaJI CCNNGG 5 cut(s) 362, 471, 666, 881, 890
BsaWI WCCGGW 1 cut(s) 51
BsaXI ACNNNNNCTCC 4 cut(s) 906, 936, 1024, 1054
Bsc4I CCNNNNNNNGG 3 cut(s) 667, 702, 855
Bse1I ACTGG 2 cut(s) 206, 707
Bse3DI GCAATG 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 51
BseBI CCWGG 1 cut(s) 828
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 5 cut(s) 362, 471, 666, 881, 890
BseGI GGATG 3 cut(s) 385, 731, 789
BseLI CCNNNNNNNGG 3 cut(s) 667, 702, 855
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 609
BseNI ACTGG 2 cut(s) 206, 707
BseXI GCAGC 2 cut(s) 689, 778
BseYI CCCAGC 2 cut(s) 980, 1051
BshFI GGCC 3 cut(s) 738, 889, 969
BshVI ATCGAT 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 1003
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 3 cut(s) 52, 104, 444
BslFI GGGAC 1 cut(s) 1045
BslI CCNNNNNNNGG 3 cut(s) 667, 702, 855
BsmAI GTCTC 4 cut(s) 105, 525, 598, 801
BsmFI GGGAC 1 cut(s) 1045
BsnI GGCC 3 cut(s) 738, 889, 969
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 1003
Bsp13I TCCGGA 1 cut(s) 51
Bsp143I GATC 5 cut(s) 58, 366, 581, 622, 1011
Bsp19I CCATGG 2 cut(s) 881, 890
BspACI CCGC 1 cut(s) 886
BspANI GGCC 3 cut(s) 738, 889, 969
BspCNI CTCAG 1 cut(s) 608
BspDI ATCGAT 1 cut(s) 369
BspEI TCCGGA 1 cut(s) 51
BspLI GGNNCC 2 cut(s) 583, 978
BspPI GGATC 4 cut(s) 374, 576, 589, 617
BspQI GCTCTTC 1 cut(s) 687
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 2 cut(s) 206, 707
BssECI CCNNGG 5 cut(s) 362, 471, 666, 881, 890
BssMI GATC 5 cut(s) 58, 366, 581, 622, 1011
BssT1I CCWWGG 3 cut(s) 362, 881, 890
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 5 cut(s) 32, 90, 564, 803, 955
Bst6I CTCTTC 1 cut(s) 687
BstC8I GCNNGC 3 cut(s) 712, 967, 999
BstDEI CTNAG 1 cut(s) 595
BstDSI CCRYGG 2 cut(s) 881, 890
BstENI CCTNNNNNAGG 1 cut(s) 665
BstF5I GGATG 3 cut(s) 385, 731, 789
BstKTI GATC 5 cut(s) 61, 369, 584, 625, 1014
BstMAI GTCTC 4 cut(s) 105, 525, 598, 801
BstMBI GATC 5 cut(s) 58, 366, 581, 622, 1011
BstMWI GCNNNNNNNGC 2 cut(s) 886, 1052
BstNI CCWGG 1 cut(s) 828
BstSCI CCNGG 1 cut(s) 826
BstSFI CTRYAG 1 cut(s) 931
BstV1I GCAGC 2 cut(s) 689, 778
BstX2I RGATCY 1 cut(s) 581
BstYI RGATCY 1 cut(s) 581
Bsu15I ATCGAT 1 cut(s) 369
BsuRI GGCC 3 cut(s) 738, 889, 969
BsuTUI ATCGAT 1 cut(s) 369
BtgI CCRYGG 2 cut(s) 881, 890
BtrI CACGTC 2 cut(s) 492, 834
BtsCI GGATG 3 cut(s) 385, 731, 789
BtsI GCAGTG 1 cut(s) 721
BtsIMutI CAGTG 4 cut(s) 37, 569, 721, 808
Cac8I GCNNGC 3 cut(s) 712, 967, 999
Cfr13I GGNCC 1 cut(s) 737
ClaI ATCGAT 1 cut(s) 369
CseI GACGC 1 cut(s) 1042
Csp6I GTAC 2 cut(s) 86, 184
CviAII CATG 7 cut(s) 62, 416, 440, 627, 686, 882, 891
CviQI GTAC 2 cut(s) 86, 184
DdeI CTNAG 1 cut(s) 595
DpnI GATC 5 cut(s) 60, 368, 583, 624, 1013
DpnII GATC 5 cut(s) 58, 366, 581, 622, 1011
DraIII CACNNNGTG 1 cut(s) 392
EaeI YGGCCR 2 cut(s) 887, 967
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 3 cut(s) 362, 881, 890
Eco88I CYCGRG 1 cut(s) 472
EcoNI CCTNNNNNAGG 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 826
EcoT14I CCWWGG 3 cut(s) 362, 881, 890
ErhI CCWWGG 3 cut(s) 362, 881, 890
FaeI CATG 7 cut(s) 65, 419, 443, 630, 689, 885, 894
FalI AAGNNNNNCTT 4 cut(s) 666, 698, 1020, 1052
FaqI GGGAC 1 cut(s) 1045
FatI CATG 7 cut(s) 61, 415, 439, 626, 685, 881, 890
FauNDI CATATG 1 cut(s) 972
Fnu4HI GCNGC 3 cut(s) 678, 767, 887
FokI GGATG 3 cut(s) 392, 738, 796
Fsp4HI GCNGC 3 cut(s) 678, 767, 887
FspBI CTAG 3 cut(s) 206, 389, 840
GluI GCNGC 3 cut(s) 678, 767, 887
GsaI CCCAGC 2 cut(s) 984, 1055
HaeIII GGCC 3 cut(s) 738, 889, 969
HapII CCGG 3 cut(s) 52, 104, 444
HgaI GACGC 1 cut(s) 1042
Hin1II CATG 7 cut(s) 65, 419, 443, 630, 689, 885, 894
HincII GTYRAC 2 cut(s) 28, 942
HindII GTYRAC 2 cut(s) 28, 942
HinfI GANTC 3 cut(s) 98, 179, 358
HpaI GTTAAC 2 cut(s) 28, 942
HpaII CCGG 3 cut(s) 52, 104, 444
HphI GGTGA 3 cut(s) 170, 682, 997
Hpy166II GTNNAC 5 cut(s) 28, 186, 199, 411, 942
Hpy188I TCNGA 5 cut(s) 23, 142, 430, 598, 634
Hpy188III TCNNGA 3 cut(s) 52, 579, 840
Hpy8I GTNNAC 5 cut(s) 28, 186, 199, 411, 942
Hpy99I CGWCG 1 cut(s) 524
HpyAV CCTTC 2 cut(s) 615, 1057
HpyCH4III ACNGT 5 cut(s) 32, 90, 564, 803, 955
HpyCH4IV ACGT 3 cut(s) 153, 491, 833
HpyCH4V TGCA 3 cut(s) 567, 714, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 886, 1052
HpyF3I CTNAG 1 cut(s) 595
HpySE526I ACGT 3 cut(s) 153, 491, 833
Hsp92II CATG 7 cut(s) 65, 419, 443, 630, 689, 885, 894
Kpn2I TCCGGA 1 cut(s) 51
KspAI GTTAAC 2 cut(s) 28, 942
Kzo9I GATC 5 cut(s) 58, 366, 581, 622, 1011
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 4 cut(s) 14, 562, 607, 962
Lsp1109I GCAGC 2 cut(s) 689, 778
LweI GCATC 1 cut(s) 805
MaeI CTAG 3 cut(s) 206, 389, 840
MaeII ACGT 3 cut(s) 153, 491, 833
MaeIII GTNAC 2 cut(s) 158, 461
MalI GATC 5 cut(s) 60, 368, 583, 624, 1013
MboI GATC 5 cut(s) 58, 366, 581, 622, 1011
MboII GAAGA 4 cut(s) 17, 232, 674, 1016
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 1 cut(s) 1003
MlsI TGGCCA 1 cut(s) 969
MluCI AATT 2 cut(s) 8, 246
MluNI TGGCCA 1 cut(s) 969
MlyI GAGTC 2 cut(s) 107, 173
MmeI TCCRAC 1 cut(s) 892
Mox20I TGGCCA 1 cut(s) 969
MroI TCCGGA 1 cut(s) 51
MscI TGGCCA 1 cut(s) 969
MseI TTAA 4 cut(s) 27, 612, 690, 941
Msp20I TGGCCA 1 cut(s) 969
MspI CCGG 3 cut(s) 52, 104, 444
MspR9I CCNGG 1 cut(s) 828
MvaI CCWGG 1 cut(s) 828
MwoI GCNNNNNNNGC 2 cut(s) 886, 1052
NcoI CCATGG 2 cut(s) 881, 890
NdeI CATATG 1 cut(s) 972
NdeII GATC 5 cut(s) 58, 366, 581, 622, 1011
NlaIII CATG 7 cut(s) 65, 419, 443, 630, 689, 885, 894
NlaIV GGNNCC 2 cut(s) 583, 978
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 2 cut(s) 158, 461
PciSI GCTCTTC 1 cut(s) 687
PfeI GAWTC 1 cut(s) 358
PflMI CCANNNNNTGG 1 cut(s) 702
PkrI GCNGC 3 cut(s) 679, 768, 888
PleI GAGTC 2 cut(s) 106, 173
PpsI GAGTC 2 cut(s) 106, 173
Psp1406I AACGTT 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 826
PspFI CCCAGC 2 cut(s) 980, 1051
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 2 cut(s) 583, 978
PspPI GGNCC 1 cut(s) 737
PsuI RGATCY 1 cut(s) 581
RsaI GTAC 2 cut(s) 87, 185
RsaNI GTAC 2 cut(s) 86, 184
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 4 cut(s) 27, 612, 690, 941
SatI GCNGC 3 cut(s) 678, 767, 887
Sau3AI GATC 5 cut(s) 58, 366, 581, 622, 1011
Sau96I GGNCC 1 cut(s) 737
SchI GAGTC 2 cut(s) 107, 173
ScrFI CCNGG 1 cut(s) 828
SduI GDGCHC 1 cut(s) 1003
SfaNI GCATC 1 cut(s) 805
SfcI CTRYAG 1 cut(s) 931
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
Sse9I AATT 2 cut(s) 8, 246
SsiI CCGC 1 cut(s) 886
SspI AATATT 1 cut(s) 458
SspMI CTAG 3 cut(s) 206, 389, 840
StyD4I CCNGG 1 cut(s) 826
StyI CCWWGG 3 cut(s) 362, 881, 890
TaaI ACNGT 5 cut(s) 32, 90, 564, 803, 955
TaiI ACGT 3 cut(s) 156, 494, 836
TaqI TCGA 1 cut(s) 369
TasI AATT 2 cut(s) 8, 246
TatI WGTACW 1 cut(s) 85
TauI GCSGC 1 cut(s) 889
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 4 cut(s) 27, 612, 690, 941
Tru9I TTAA 4 cut(s) 27, 612, 690, 941
TscAI CASTG 4 cut(s) 37, 569, 721, 808
TseFI GTSAC 2 cut(s) 158, 461
TseI GCWGC 2 cut(s) 677, 766
Tsp45I GTSAC 2 cut(s) 158, 461
TspDTI ATGAA 3 cut(s) 232, 521, 674
TspRI CASTG 4 cut(s) 37, 569, 721, 808
Van91I CCANNNNNTGG 1 cut(s) 702
XagI CCTNNNNNAGG 1 cut(s) 665
XbaI TCTAGA 1 cut(s) 839
XcmI CCANNNNNNNNNTGG 1 cut(s) 888
XspI CTAG 3 cut(s) 206, 389, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.