Rroxscaffold_7G00161160

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018487
Physical Location & Seq
Reverse (-)
3966992 .. 3967810
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161160.1

Sequence Viewer

Length: 213 bp
ATGCTCGAGTGTCGGCCAGTCACGGCTTCTAGATACTCCATAAACACACTAAGCTTACCAGTTGAGACTCCATGGAGGCCGTGGAACTCTAACACTGAGGAGGTTGGAGGATATGTGGTTGGTTCCAAGCGGTTGACATTTGTAACAGTAAGAGGAGCTGGCCATATGGTTCATTGGTTCCGAACTATCAACCGCAGCGATCACTCGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

70

Amino Acids

7.98

Weight (kDa)

9.77

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 6 - 61 1.3e-11 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018487)

Species Orthologous Gene IDs
malus_domestica MD15G1087200.v1.1
rosa_chinensis RchiOBHm_Chr6g0307101
rosa_multiflora Rmu_co8409487.1_g000001 Rmu_sc0001776.1_g000002
rosa_roxburghii Rroxscaffold_7G00161160 Rroxscaffold_7G00161170
rosa_rugosa Rorug06G0356900
rosa_samantha Rh6AG467500 Rh6BG432700 Rh6DG469500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 130, 193
AcoI YGGCCR 2 cut(s) 14, 160
AluBI AGCT 2 cut(s) 54, 158
AluI AGCT 2 cut(s) 54, 158
Alw26I GTCTC 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 3 cut(s) 14, 77, 160
ApeKI GCWGC 1 cut(s) 195
AvaI CYCGRG 1 cut(s) 5
BalI TGGCCA 1 cut(s) 162
BbvI GCAGC 1 cut(s) 207
BceAI ACGGC 2 cut(s) 39, 64
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 5
BmiI GGNNCC 2 cut(s) 124, 179
BsaJI CCNNGG 2 cut(s) 71, 80
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bse1I ACTGG 2 cut(s) 17, 59
BseDI CCNNGG 2 cut(s) 71, 80
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 17, 59
BseRI GAGGAG 2 cut(s) 113, 168
BseXI GCAGC 1 cut(s) 207
BshFI GGCC 3 cut(s) 16, 79, 162
BsiHKCI CYCGRG 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 3 cut(s) 16, 79, 162
BsoBI CYCGRG 1 cut(s) 5
Bsp143I GATC 1 cut(s) 199
Bsp19I CCATGG 1 cut(s) 71
BspACI CCGC 2 cut(s) 130, 193
BspANI GGCC 3 cut(s) 16, 79, 162
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 124, 179
BsrI ACTGG 2 cut(s) 17, 59
BssECI CCNNGG 2 cut(s) 71, 80
BssMI GATC 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 50, 96
BstDSI CCRYGG 2 cut(s) 71, 80
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 207
BsuRI GGCC 3 cut(s) 16, 79, 162
BtgI CCRYGG 2 cut(s) 71, 80
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 160
CviAII CATG 1 cut(s) 72
CviJI RGCY 6 cut(s) 16, 26, 54, 79, 158, 162
CviKI_1 RGCY 6 cut(s) 16, 26, 54, 79, 158, 162
DdeI CTNAG 2 cut(s) 50, 96
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 2 cut(s) 14, 160
Eco130I CCWWGG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 1 cut(s) 75
FaiI YATR 5 cut(s) 41, 73, 114, 165, 167
FatI CATG 1 cut(s) 71
FauNDI CATATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 3 cut(s) 16, 79, 162
Hin1II CATG 1 cut(s) 75
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 135
HpyCH4III ACNGT 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 50, 96
Hsp92II CATG 1 cut(s) 75
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 3 cut(s) 30, 72, 144
Lsp1109I GCAGC 1 cut(s) 207
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 19, 142
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 162
MluNI TGGCCA 1 cut(s) 162
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 5 cut(s) 69, 91, 94, 101, 146
Mox20I TGGCCA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 162
MseI TTAA 1 cut(s) 211
Msp20I TGGCCA 1 cut(s) 162
NcoI CCATGG 1 cut(s) 71
NdeI CATATG 1 cut(s) 165
NdeII GATC 1 cut(s) 199
NlaIII CATG 1 cut(s) 75
NlaIV GGNNCC 2 cut(s) 124, 179
NmuCI GTSAC 1 cut(s) 19
PaeR7I CTCGAG 1 cut(s) 5
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 124, 179
PspXI VCTCGAGB 1 cut(s) 5
SaqAI TTAA 1 cut(s) 211
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 1 cut(s) 199
SchI GAGTC 1 cut(s) 61
SetI ASST 3 cut(s) 56, 105, 160
Sfr274I CTCGAG 1 cut(s) 5
SlaI CTCGAG 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SsiI CCGC 2 cut(s) 130, 193
SspMI CTAG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 6
Tru1I TTAA 1 cut(s) 211
Tru9I TTAA 1 cut(s) 211
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 161
TspRI CASTG 1 cut(s) 100
XbaI TCTAGA 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
XhoI CTCGAG 1 cut(s) 5
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.