Rmu_sc0001776.1_g000002

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001776.1
OG0018487
Physical Location & Seq
Forward (+)
13372 .. 14000
629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001776.1_g000002.1.cds

Sequence Viewer

Length: 285 bp
atgctcgagtaccggccagtcacggcttctagatactccataaacaaactaagcttaccagttgagagtactccatggaggccgtggaactctaacactgaggaggttggaggatatgtggttggttacaaggggttgacatttgtaacagtaagaggagctggccatatgctaccaaccgcagcgatcagttgtcttaatctcatcgttccttcaggggacacttcctccggctcctcctccataggaggtcatggcacatgcattttggaaggtggtggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

94

Amino Acids

9.81

Weight (kDa)

6.7

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018487)

Species Orthologous Gene IDs
malus_domestica MD15G1087200.v1.1
rosa_chinensis RchiOBHm_Chr6g0307101
rosa_multiflora Rmu_co8409487.1_g000001 Rmu_sc0001776.1_g000002
rosa_roxburghii Rroxscaffold_7G00161160 Rroxscaffold_7G00161170
rosa_rugosa Rorug06G0356900
rosa_samantha Rh6AG467500 Rh6BG432700 Rh6DG469500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AcoI YGGCCR 2 cut(s) 14, 163
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 2 cut(s) 11, 70
AluBI AGCT 2 cut(s) 54, 161
AluI AGCT 2 cut(s) 54, 161
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 3 cut(s) 14, 80, 163
ApeKI GCWGC 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 5
BalI TGGCCA 1 cut(s) 165
BbvI GCAGC 1 cut(s) 194
BceAI ACGGC 2 cut(s) 39, 67
BfaI CTAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmcAI AGTACT 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 235
BsaJI CCNNGG 2 cut(s) 74, 83
BsaXI ACNNNNNCTCC 4 cut(s) 102, 132, 212, 242
Bse118I RCCGGY 1 cut(s) 12
Bse1I ACTGG 2 cut(s) 17, 59
BseDI CCNNGG 2 cut(s) 74, 83
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 2 cut(s) 17, 59
BseRI GAGGAG 4 cut(s) 116, 171, 226, 229
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 3 cut(s) 16, 82, 165
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 2 cut(s) 13, 231
BslFI GGGAC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 3 cut(s) 16, 82, 165
BsoBI CYCGRG 1 cut(s) 5
Bsp143I GATC 1 cut(s) 186
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 1 cut(s) 180
BspANI GGCC 3 cut(s) 16, 82, 165
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 12
BsrI ACTGG 2 cut(s) 17, 59
BssAI RCCGGY 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 74, 83
BssMI GATC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 50, 99
BstDSI CCRYGG 2 cut(s) 74, 83
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 194
BsuRI GGCC 3 cut(s) 16, 82, 165
BtgI CCRYGG 2 cut(s) 74, 83
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 12
Csp6I GTAC 2 cut(s) 10, 69
CviAII CATG 3 cut(s) 75, 254, 261
CviJI RGCY 7 cut(s) 16, 26, 54, 82, 161, 165, 234
CviKI_1 RGCY 7 cut(s) 16, 26, 54, 82, 161, 165, 234
CviQI GTAC 2 cut(s) 10, 69
DdeI CTNAG 2 cut(s) 50, 99
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
EaeI YGGCCR 2 cut(s) 14, 163
Eco130I CCWWGG 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 3 cut(s) 78, 257, 264
FaiI YATR 8 cut(s) 41, 76, 117, 168, 170, 245, 255, 262
FaqI GGGAC 1 cut(s) 233
FatI CATG 3 cut(s) 74, 253, 260
FauNDI CATATG 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 3 cut(s) 16, 82, 165
HapII CCGG 2 cut(s) 13, 231
Hin1II CATG 3 cut(s) 78, 257, 264
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 52
HpaII CCGG 2 cut(s) 13, 231
Hpy166II GTNNAC 1 cut(s) 138
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 222, 266
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 264
HpyF3I CTNAG 2 cut(s) 50, 99
Hsp92II CATG 3 cut(s) 78, 257, 264
Kzo9I GATC 1 cut(s) 186
LmnI GCTCC 2 cut(s) 158, 239
LpnPI CCDG 6 cut(s) 26, 30, 72, 147, 201, 244
Lsp1109I GCAGC 1 cut(s) 194
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 3 cut(s) 19, 125, 145
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 165
MluNI TGGCCA 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 9 cut(s) 72, 94, 97, 104, 149, 238, 242, 247, 250
Mox20I TGGCCA 1 cut(s) 165
Mph1103I ATGCAT 1 cut(s) 266
MscI TGGCCA 1 cut(s) 165
MseI TTAA 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 165
MspI CCGG 2 cut(s) 13, 231
NcoI CCATGG 1 cut(s) 74
NdeI CATATG 1 cut(s) 168
NdeII GATC 1 cut(s) 186
NlaIII CATG 3 cut(s) 78, 257, 264
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 266
NspI RCATGY 1 cut(s) 264
PaeR7I CTCGAG 1 cut(s) 5
PkrI GCNGC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 235
PspXI VCTCGAGB 1 cut(s) 5
RsaI GTAC 2 cut(s) 11, 70
RsaNI GTAC 2 cut(s) 10, 69
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 186
ScaI AGTACT 1 cut(s) 70
SetI ASST 5 cut(s) 56, 108, 163, 253, 277
Sfr274I CTCGAG 1 cut(s) 5
SlaI CTCGAG 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SsiI CCGC 1 cut(s) 180
SspMI CTAG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 6
TatI WGTACW 1 cut(s) 68
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 19
TspRI CASTG 1 cut(s) 103
XbaI TCTAGA 1 cut(s) 29
XceI RCATGY 1 cut(s) 264
XcmI CCANNNNNNNNNTGG 1 cut(s) 81
XhoI CTCGAG 1 cut(s) 5
XspI CTAG 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 70
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.