MD15G1116100.v1.1

TIFY 8-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
8188285 .. 8192990
4706 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1116100.v1.1.491

Sequence Viewer

Length: 1350 bp
ATGGCTGTTCTGAAAATGGCCCAGCAAGGCATCCCCAACAGCAATGCCACAACTCTCAGCAGCCAACAGCAAAAGCAGCAGCCGCAGAAGCAGAAGCTAGAGGAGCAGCAGCAGGGGAAGCACACCATCTTCCATGATTTTCTGGGCATGAATCCTGGAGATTCCCCTGTGGTTTTAGCCCCTAAAACCTCCACCGATTGTAGGCTCTCTGAGCCTTCTCCCTCCGCCTCCGCTTCCCTTGGGGCTTCCTCCGGCGGTGGCCGTGGCCCCATCTCCACCACCTCTGATCTGGGTTCCGTGAAGGAGTTTGAAAGACAGGCTGGAAATCATCTTGAGGGGGTTCCATTCTATGGCCCGAGGAGTGATATTTCTGGGCCTGAGATAAGTAACAGGTTACTAGGAAGTAAGCGGAGTAATTCGGACTCGACTTTTATGGGTTCATCCAGAGATGGTGTCCCTCATATGGGTCCTGATCACCTTGAGAGGTCACATTTGATGAAGATGCTTCGACATGGACCAGGGGGAGAGCGACCTCGAAGGTCCAATGACGATGAAGCAGTCTTTGCTACACAGCCACCGAGGCCAACTTCTGGTTCTCTCATTTTTCAGTCTCCACTTGGTGGTAGAGTTGATACCAAATGGGAACGACCTACTCCCATGAATATGGGTGCTGCAGTACAGTACCCTCCACGAGGGGGTCATTTTGTACCCATGGTGCATCAATTACCTTCAAACCGATTTAGGGATGCCAATGCCAGTCCAAACAATATTTCTCAATCAGCAGCAGATGAGGGATCTAGAACTGGAATTAAGGGCCCGGGAATTTTGAGTTCTATTAATGCCGGTAGTGATGCTCCAGAAAGAAACTCGTCTGGTGTGCTGCCAAGTGGCAGCAGGCAGAAATCTGGGACTCATATTGTAGAGTCAGAACCTTCTAATCCAAGTCAACATGGATTTATATCAGCTGGTCGGCAGATGACCATATTTTATGGTGGTCAAGCTCATGTTTTTGACGATGTCCATCCGAACAAGGCAGATGTTATAATGGCTTTAGCTGGATCAAATGGAGGATCTTGGTCAACAACCTACTCGCTAAAACCTAATGTGAGGCCAGGCAGTGAAAGTCGCATGCCTAGTGGAGAGATTGAAACCGGTACAGCAATTAACAACGCATTGTTGCGAGAAAACCGTGGGAGGTTATCTATTCCTGGGAATTCTAGTCAAGCCGCGGGTTTTGCTGATCAAACATTGACACCGGCAGGTGGCCACCAAGGCAGCAATTTAGCCAAAGATACAAGAAACATGATTCAACCAGCGGAACCCAGTCCAAAAGAGAAAAATGAGCTGTGA

Protein Analysis

450

Amino Acids

47.63

Weight (kDa)

9.11

Isoelectric Point (pI)

56.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 322 - 353 1.2e-14 tify domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1043
AarI CACCTGC 1 cut(s) 1250
Acc36I ACCTGC 1 cut(s) 1250
AccB7I CCANNNNNTGG 3 cut(s) 350, 590, 620
AccII CGCG 1 cut(s) 1229
AciI CCGC 8 cut(s) 83, 225, 231, 255, 409, 1227, 1229, 1316
AclWI GGATC 3 cut(s) 802, 1066, 1078
AcoI YGGCCR 2 cut(s) 259, 1264
AcsI RAATTY 2 cut(s) 822, 1213
AdeI CACNNNGTG 1 cut(s) 620
AfaI GTAC 4 cut(s) 678, 683, 708, 1156
AgeI ACCGGT 1 cut(s) 1151
AgsI TTSAA 4 cut(s) 311, 732, 1148, 1310
AjnI CCWGG 4 cut(s) 154, 517, 1111, 1207
AjuI GAANNNNNNNTTGG 4 cut(s) 577, 609, 754, 786
AluBI AGCT 5 cut(s) 97, 965, 1001, 1055, 1345
AluI AGCT 5 cut(s) 97, 965, 1001, 1055, 1345
Alw26I GTCTC 1 cut(s) 615
AlwI GGATC 3 cut(s) 802, 1066, 1078
Ama87I CYCGRG 2 cut(s) 355, 817
AoxI GGCC 9 cut(s) 18, 259, 265, 352, 374, 581, 814, 1109, 1264
ApaI GGGCCC 1 cut(s) 818
ApoI RAATTY 2 cut(s) 822, 1213
AseI ATTAAT 1 cut(s) 837
AsiGI ACCGGT 1 cut(s) 1151
AspS9I GGNCC 9 cut(s) 19, 266, 353, 374, 467, 515, 540, 814, 815
AsuC2I CCSGG 2 cut(s) 818, 819
AsuHPI GGTGA 1 cut(s) 467
AvaI CYCGRG 2 cut(s) 355, 817
AvaII GGWCC 3 cut(s) 467, 515, 540
BaeGI GKGCMC 1 cut(s) 818
BalI TGGCCA 1 cut(s) 1266
BanII GRGCYC 1 cut(s) 818
BauI CACGAG 1 cut(s) 690
BccI CCATC 4 cut(s) 134, 278, 443, 1029
BceAI ACGGC 1 cut(s) 246
BciT130I CCWGG 4 cut(s) 156, 519, 1113, 1209
BclI TGATCA 2 cut(s) 472, 1240
BcnI CCSGG 2 cut(s) 818, 819
BcoDI GTCTC 1 cut(s) 615
BfaI CTAG 5 cut(s) 98, 398, 798, 1134, 1218
BfmI CTRYAG 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 1250
BglI GCCNNNNNGGC 2 cut(s) 580, 1272
Bme1390I CCNGG 6 cut(s) 156, 519, 818, 819, 1113, 1209
Bme18I GGWCC 3 cut(s) 467, 515, 540
BmeT110I CYCGRG 2 cut(s) 355, 817
BmgT120I GGNCC 9 cut(s) 19, 266, 353, 374, 467, 515, 540, 814, 815
BmiI GGNNCC 6 cut(s) 268, 295, 342, 468, 816, 1320
BmrFI CCNGG 6 cut(s) 156, 519, 818, 819, 1113, 1209
BmrI ACTGGG 1 cut(s) 1317
BmsI GCATC 5 cut(s) 39, 492, 727, 736, 841
BmuI ACTGGG 1 cut(s) 1317
BpmI CTGGAG 2 cut(s) 177, 840
BpuEI CTTGAG 2 cut(s) 353, 500
BpuMI CCSGG 2 cut(s) 818, 819
BsaBI GATNNNNATC 2 cut(s) 958, 1020
BsaWI WCCGGW 1 cut(s) 1151
Bse118I RCCGGY 3 cut(s) 842, 1151, 1255
Bse1I ACTGG 3 cut(s) 756, 808, 1323
Bse3DI GCAATG 1 cut(s) 49
Bse8I GATNNNNATC 2 cut(s) 958, 1020
BseBI CCWGG 4 cut(s) 156, 519, 1113, 1209
BseGI GGATG 4 cut(s) 30, 440, 751, 1021
BseJI GATNNNNATC 2 cut(s) 958, 1020
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 3 cut(s) 70, 201, 369
BseNI ACTGG 3 cut(s) 756, 808, 1323
BseRI GAGGAG 2 cut(s) 116, 373
BseSI GKGCMC 1 cut(s) 818
BseYI CCCAGC 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 1229
BshFI GGCC 9 cut(s) 20, 261, 267, 354, 376, 583, 816, 1111, 1266
BshTI ACCGGT 1 cut(s) 1151
BsiHKCI CYCGRG 2 cut(s) 355, 817
BsiSI CCGG 5 cut(s) 252, 818, 843, 1152, 1256
BslFI GGGAC 2 cut(s) 440, 922
BsmAI GTCTC 1 cut(s) 615
BsmFI GGGAC 2 cut(s) 440, 922
BsnI GGCC 9 cut(s) 20, 261, 267, 354, 376, 583, 816, 1111, 1266
BsoBI CYCGRG 2 cut(s) 355, 817
Bsp120I GGGCCC 1 cut(s) 814
Bsp1286I GDGCHC 1 cut(s) 818
Bsp143I GATC 6 cut(s) 286, 472, 794, 1058, 1070, 1240
Bsp19I CCATGG 1 cut(s) 711
BspACI CCGC 8 cut(s) 83, 225, 231, 255, 409, 1227, 1229, 1316
BspANI GGCC 9 cut(s) 20, 261, 267, 354, 376, 583, 816, 1111, 1266
BspCNI CTCAG 3 cut(s) 69, 202, 370
BspFNI CGCG 1 cut(s) 1229
BspLI GGNNCC 6 cut(s) 268, 295, 342, 468, 816, 1320
BspMAI CTGCAG 1 cut(s) 676
BspMI ACCTGC 1 cut(s) 1250
BspPI GGATC 3 cut(s) 802, 1066, 1078
BsrDI GCAATG 1 cut(s) 49
BsrFI RCCGGY 3 cut(s) 842, 1151, 1255
BsrI ACTGG 3 cut(s) 756, 808, 1323
BssAI RCCGGY 3 cut(s) 842, 1151, 1255
BssMI GATC 6 cut(s) 286, 472, 794, 1058, 1070, 1240
BssSI CACGAG 1 cut(s) 690
BssT1I CCWWGG 3 cut(s) 238, 711, 1270
Bst2BI CACGAG 1 cut(s) 690
Bst2UI CCWGG 4 cut(s) 156, 519, 1113, 1209
Bst4CI ACNGT 2 cut(s) 681, 1190
BstAPI GCANNNNNTGC 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 896, 1130
BstDEI CTNAG 3 cut(s) 56, 210, 378
BstDSI CCRYGG 4 cut(s) 262, 711, 1189, 1227
BstENI CCTNNNNNAGG 1 cut(s) 690
BstF5I GGATG 4 cut(s) 30, 440, 751, 1021
BstFNI CGCG 1 cut(s) 1229
BstKTI GATC 6 cut(s) 289, 475, 797, 1061, 1073, 1243
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 6 cut(s) 286, 472, 794, 1058, 1070, 1240
BstNI CCWGG 4 cut(s) 156, 519, 1113, 1209
BstNSI RCATGY 1 cut(s) 1132
BstSCI CCNGG 6 cut(s) 154, 517, 816, 817, 1111, 1207
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 1 cut(s) 818
BstUI CGCG 1 cut(s) 1229
BstX2I RGATCY 2 cut(s) 794, 1070
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 2 cut(s) 794, 1070
BsuRI GGCC 9 cut(s) 20, 261, 267, 354, 376, 583, 816, 1111, 1266
BtgI CCRYGG 4 cut(s) 262, 711, 1189, 1227
BtsCI GGATG 4 cut(s) 30, 440, 751, 1021
BtsI GCAGTG 1 cut(s) 1123
BtsIMutI CAGTG 1 cut(s) 1123
BveI ACCTGC 1 cut(s) 1250
Cac8I GCNNGC 2 cut(s) 896, 1130
Cfr10I RCCGGY 3 cut(s) 842, 1151, 1255
Cfr13I GGNCC 9 cut(s) 19, 266, 353, 374, 467, 515, 540, 814, 815
Cfr42I CCGCGG 1 cut(s) 1230
Cfr9I CCCGGG 1 cut(s) 817
Csp6I GTAC 4 cut(s) 677, 682, 707, 1155
CspAI ACCGGT 1 cut(s) 1151
CviAII CATG 9 cut(s) 134, 148, 512, 658, 712, 950, 1004, 1129, 1303
CviQI GTAC 4 cut(s) 677, 682, 707, 1155
DdeI CTNAG 3 cut(s) 56, 210, 378
DpnI GATC 6 cut(s) 288, 474, 796, 1060, 1072, 1242
DpnII GATC 6 cut(s) 286, 472, 794, 1058, 1070, 1240
DraIII CACNNNGTG 1 cut(s) 620
EaeI YGGCCR 2 cut(s) 259, 1264
EciI GGCGGA 1 cut(s) 214
Eco130I CCWWGG 3 cut(s) 238, 711, 1270
Eco24I GRGCYC 1 cut(s) 818
Eco47I GGWCC 3 cut(s) 467, 515, 540
Eco88I CYCGRG 2 cut(s) 355, 817
EcoNI CCTNNNNNAGG 1 cut(s) 690
EcoO109I RGGNCCY 2 cut(s) 467, 814
EcoRI GAATTC 1 cut(s) 1213
EcoRII CCWGG 4 cut(s) 154, 517, 1111, 1207
EcoT14I CCWWGG 3 cut(s) 238, 711, 1270
EcoT38I GRGCYC 1 cut(s) 818
ErhI CCWWGG 3 cut(s) 238, 711, 1270
FaeI CATG 9 cut(s) 137, 151, 515, 661, 715, 953, 1007, 1132, 1306
FaqI GGGAC 2 cut(s) 440, 922
FatI CATG 9 cut(s) 133, 147, 511, 657, 711, 949, 1003, 1128, 1302
FauI CCCGC 1 cut(s) 1222
FauNDI CATATG 1 cut(s) 462
FbaI TGATCA 2 cut(s) 472, 1240
FokI GGATG 4 cut(s) 17, 427, 758, 1008
FriOI GRGCYC 1 cut(s) 818
FspBI CTAG 5 cut(s) 98, 398, 798, 1134, 1218
GsaI CCCAGC 1 cut(s) 25
GsuI CTGGAG 2 cut(s) 177, 840
HaeIII GGCC 9 cut(s) 20, 261, 267, 354, 376, 583, 816, 1111, 1266
HapII CCGG 5 cut(s) 252, 818, 843, 1152, 1256
Hin1II CATG 9 cut(s) 137, 151, 515, 661, 715, 953, 1007, 1132, 1306
HincII GTYRAC 2 cut(s) 947, 1080
HindII GTYRAC 2 cut(s) 947, 1080
HinfI GANTC 6 cut(s) 151, 161, 422, 910, 923, 1306
HpaII CCGG 5 cut(s) 252, 818, 843, 1152, 1256
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 947, 1080
Hpy188I TCNGA 6 cut(s) 12, 211, 286, 421, 928, 1026
Hpy188III TCNNGA 5 cut(s) 332, 444, 470, 798, 857
Hpy8I GTNNAC 2 cut(s) 947, 1080
HpyAV CCTTC 5 cut(s) 225, 295, 531, 738, 942
HpyCH4III ACNGT 2 cut(s) 681, 1190
HpyCH4V TGCA 2 cut(s) 674, 718
HpyF3I CTNAG 3 cut(s) 56, 210, 378
Hsp92II CATG 9 cut(s) 137, 151, 515, 661, 715, 953, 1007, 1132, 1306
Ksp22I TGATCA 2 cut(s) 472, 1240
KspI CCGCGG 1 cut(s) 1230
Kzo9I GATC 6 cut(s) 286, 472, 794, 1058, 1070, 1240
LmnI GCTCC 2 cut(s) 103, 859
LweI GCATC 5 cut(s) 39, 492, 727, 736, 841
MaeI CTAG 5 cut(s) 98, 398, 798, 1134, 1218
MaeIII GTNAC 3 cut(s) 386, 393, 486
MalI GATC 6 cut(s) 288, 474, 796, 1060, 1072, 1242
MboI GATC 6 cut(s) 286, 472, 794, 1058, 1070, 1240
MboII GAAGA 2 cut(s) 121, 511
MflI RGATCY 2 cut(s) 794, 1070
MhlI GDGCHC 1 cut(s) 818
MlsI TGGCCA 1 cut(s) 1266
MluCI AATT 7 cut(s) 415, 722, 807, 822, 1161, 1213, 1279
MluNI TGGCCA 1 cut(s) 1266
MlyI GAGTC 3 cut(s) 416, 904, 932
Mox20I TGGCCA 1 cut(s) 1266
MscI TGGCCA 1 cut(s) 1266
MseI TTAA 3 cut(s) 810, 837, 1164
MslI CAYNNNNRTG 1 cut(s) 662
Msp20I TGGCCA 1 cut(s) 1266
MspA1I CMGCKG 3 cut(s) 965, 1229, 1316
MspI CCGG 5 cut(s) 252, 818, 843, 1152, 1256
MspR9I CCNGG 6 cut(s) 156, 519, 818, 819, 1113, 1209
MvaI CCWGG 4 cut(s) 156, 519, 1113, 1209
MvnI CGCG 1 cut(s) 1229
NciI CCSGG 2 cut(s) 818, 819
NcoI CCATGG 1 cut(s) 711
NdeI CATATG 1 cut(s) 462
NdeII GATC 6 cut(s) 286, 472, 794, 1058, 1070, 1240
NlaIII CATG 9 cut(s) 137, 151, 515, 661, 715, 953, 1007, 1132, 1306
NlaIV GGNNCC 6 cut(s) 268, 295, 342, 468, 816, 1320
NmuCI GTSAC 1 cut(s) 486
NspI RCATGY 1 cut(s) 1132
PaeI GCATGC 1 cut(s) 1132
PaqCI CACCTGC 1 cut(s) 1250
PfeI GAWTC 3 cut(s) 151, 161, 1306
PflFI GACNNNGTC 1 cut(s) 1016
PflMI CCANNNNNTGG 3 cut(s) 350, 590, 620
PfoI TCCNGGA 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 1151
PleI GAGTC 3 cut(s) 416, 904, 931
PpsI GAGTC 3 cut(s) 416, 904, 931
PpuMI RGGWCCY 1 cut(s) 467
PshBI ATTAAT 1 cut(s) 837
PsiI TTATAA 1 cut(s) 1043
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 4 cut(s) 154, 517, 1111, 1207
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 4 cut(s) 154, 517, 1111, 1207
PspN4I GGNNCC 6 cut(s) 268, 295, 342, 468, 816, 1320
PspOMI GGGCCC 1 cut(s) 814
PspPI GGNCC 9 cut(s) 19, 266, 353, 374, 467, 515, 540, 814, 815
PspPPI RGGWCCY 1 cut(s) 467
PstI CTGCAG 1 cut(s) 676
PsuI RGATCY 2 cut(s) 794, 1070
PsyI GACNNNGTC 1 cut(s) 1016
PvuII CAGCTG 1 cut(s) 965
RsaI GTAC 4 cut(s) 678, 683, 708, 1156
RsaNI GTAC 4 cut(s) 677, 682, 707, 1155
RseI CAYNNNNRTG 1 cut(s) 662
SacII CCGCGG 1 cut(s) 1230
SaqAI TTAA 3 cut(s) 810, 837, 1164
Sau3AI GATC 6 cut(s) 286, 472, 794, 1058, 1070, 1240
Sau96I GGNCC 9 cut(s) 19, 266, 353, 374, 467, 515, 540, 814, 815
SchI GAGTC 3 cut(s) 416, 904, 932
ScrFI CCNGG 6 cut(s) 156, 519, 818, 819, 1113, 1209
SduI GDGCHC 1 cut(s) 818
SfaNI GCATC 5 cut(s) 39, 492, 727, 736, 841
SfcI CTRYAG 1 cut(s) 672
Sfr303I CCGCGG 1 cut(s) 1230
SgrBI CCGCGG 1 cut(s) 1230
SinI GGWCC 3 cut(s) 467, 515, 540
SmaI CCCGGG 1 cut(s) 819
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 2 cut(s) 332, 479
SmoI CTYRAG 2 cut(s) 332, 479
SphI GCATGC 1 cut(s) 1132
Sse9I AATT 7 cut(s) 415, 722, 807, 822, 1161, 1213, 1279
SsiI CCGC 8 cut(s) 83, 225, 231, 255, 409, 1227, 1229, 1316
SspI AATATT 1 cut(s) 769
SspMI CTAG 5 cut(s) 98, 398, 798, 1134, 1218
StyD4I CCNGG 6 cut(s) 154, 517, 816, 817, 1111, 1207
StyI CCWWGG 3 cut(s) 238, 711, 1270
TaaI ACNGT 2 cut(s) 681, 1190
TaqI TCGA 3 cut(s) 425, 508, 535
TasI AATT 7 cut(s) 415, 722, 807, 822, 1161, 1213, 1279
TatI WGTACW 1 cut(s) 676
TauI GCSGC 2 cut(s) 85, 1229
TfiI GAWTC 3 cut(s) 151, 161, 1306
Tru1I TTAA 3 cut(s) 810, 837, 1164
Tru9I TTAA 3 cut(s) 810, 837, 1164
TscAI CASTG 1 cut(s) 1123
TseFI GTSAC 1 cut(s) 486
Tsp45I GTSAC 1 cut(s) 486
TspDTI ATGAA 5 cut(s) 164, 429, 512, 567, 674
TspGWI ACGGA 1 cut(s) 286
TspMI CCCGGG 1 cut(s) 817
TspRI CASTG 1 cut(s) 1123
Tth111I GACNNNGTC 1 cut(s) 1016
Van91I CCANNNNNTGG 3 cut(s) 350, 590, 620
VpaK11BI GGWCC 3 cut(s) 467, 515, 540
VspI ATTAAT 1 cut(s) 837
XagI CCTNNNNNAGG 1 cut(s) 690
XapI RAATTY 2 cut(s) 822, 1213
XbaI TCTAGA 1 cut(s) 797
XceI RCATGY 1 cut(s) 1132
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XmaI CCCGGG 1 cut(s) 817
XspI CTAG 5 cut(s) 98, 398, 798, 1134, 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.