Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008601

Physical Location & Seq

Genomic Coordinates Forward (+)

68025965 .. 68030630

Gene Structure 4666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCCGTACTGAAAATGGCTCTGCCCAGCAACAATGCCAGTACCCAAAAGCAGCAGAAGCTGAAGCAGGAAGAAGAAGACCAATTAGTGAAGCCAATGTTTCATGACTTTCTGGGTATGAAGCCATCTACTGATTCCCCTGTTGTTTTGGGCCCAAAAGGATCCGATTCCAGGCTCACTGAGGCATCTCCCTCCGCTTCTGCTTCACTTGGGGGATCCTCCGGCGGTGGCCGTGGGCCCATCTCCACCACCTCTGATCTGGGTTCCGAAAGACAAGCTGGAAATCATCTCGAGGGGGTTCCATATTATGGTCCAAGAAGCGATATTTCTGGGCCTGAGATAAGTAACAGGATACTAGGCAGTAAGAGAAGTAATTCAGACTCTACTTTTATGGGTTCGTCCAGAGATGGGATCCCTCATATGGGTCCTGACTCCCTTGAGAGCTCACATTTGATGAAGATGTTTCGAAATGGAACTGGGGGAGAGCGACCTAGAAGGTCCATTGACGATGAAGCAGTCTTTGCTACCCAGCCAATGAGGCCAACTTCTGCTAATCTCATATTTCAGACTCCACATGGCGGTAGAGTTGATAACAATATTTCCAAGTGGGAACGATCTACTCCCATGAATTTGGGTGGTGCAGTGCAATACCCTCCACGAGGAGGTCATTTTGCACCCTTTGTTCATCAATTGCCTTCTAACAGATTTAGGGATGCAAATGCTGGTGCAAATAATATATCTCAATTAGCCGCTGATGAGGGGTCTAGAACTGGAATTAAAGGGCCAGGGATTTTGAGTGCCATCAATGCTAGCAGTGGTGCTTCTGATAGAAACTCATCTGTGGTGCTGCCTAGCGGCAGTAGGCAGAAATCTGGGACTAATACTTCAGAGCCAGAACCTTTGACTCCAAGGTATCTTATTGCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tify

Protein Analysis

309

Amino Acids

32.71

Weight (kDa)

9.36

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32570 AT4G32570
fragaria_vesca	FvH4_2g30050 FvH4_2g30050 FvH4_2g30050 FvH4_2g30050
malus_domestica	MD08G1137500.v1.1 MD15G1116100.v1.1
prunus_persica	Prupe.1G467500_v2.0.a1
pyrus_communis	pycom08g11640 pycom15g10470
rosa_chinensis	RchiOBHm_Chr6g0312851
rosa_laevigata	RLG00000010292
rosa_multiflora	Rmu_sc0008049.1_g000009
rosa_roxburghii	Rroxscaffold_7G00156430
rosa_rugosa	Rorug06G0400000 Rorug06G0400100 Rorug06G0400200
rosa_samantha	Rh6AG517300 Rh6BG528700 Rh6CG533400 Rh6DG519900
rosa_wichuraiana	Rw6G044940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	308
AciI	CCGC	5 cut(s)	195, 225, 579, 750, 855
AclWI	GGATC	6 cut(s)	156, 169, 210, 223, 406, 419
AcoI	YGGCCR	2 cut(s)	3, 229
AcsI	RAATTY	1 cut(s)	628
AcuI	CTGAAG	2 cut(s)	83, 870
AfaI	GTAC	2 cut(s)	9, 43
AfiI	CCNNNNNNNGG	8 cut(s)	171, 308, 408, 421, 422, 578, 659, 662
AjnI	CCWGG	2 cut(s)	170, 784
AluBI	AGCT	3 cut(s)	61, 278, 444
AluI	AGCT	3 cut(s)	61, 278, 444
Alw21I	GWGCWC	1 cut(s)	446
AlwI	GGATC	6 cut(s)	156, 169, 210, 223, 406, 419
AlwNI	CAGNNNCTG	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	7 cut(s)	3, 151, 229, 236, 332, 539, 782
ApaI	GGGCCC	2 cut(s)	155, 240
ApeKI	GCWGC	2 cut(s)	52, 847
ApoI	RAATTY	1 cut(s)	628
Asp700I	GAANNNNTTC	1 cut(s)	373
AspS9I	GGNCC	9 cut(s)	151, 152, 236, 237, 311, 332, 425, 498, 782
AsuII	TTCGAA	1 cut(s)	466
AsuNHI	GCTAGC	1 cut(s)	809
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	3 cut(s)	311, 425, 498
BaeGI	GKGCMC	2 cut(s)	155, 240
BamHI	GGATCC	3 cut(s)	161, 215, 411
BanII	GRGCYC	3 cut(s)	155, 240, 446
BauI	CACGAG	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	64, 834
BccI	CCATC	4 cut(s)	133, 248, 401, 809
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	2 cut(s)	172, 786
BciVI	GTATCC	1 cut(s)	345
BfaI	CTAG	5 cut(s)	356, 492, 765, 810, 852
BfuI	GTATCC	1 cut(s)	345
BglI	GCCNNNNNGGC	1 cut(s)	538
BisI	GCNGC	4 cut(s)	53, 750, 848, 856
BlsI	GCNGC	4 cut(s)	54, 751, 849, 857
Bme1390I	CCNGG	2 cut(s)	172, 786
Bme18I	GGWCC	3 cut(s)	311, 425, 498
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	9 cut(s)	151, 152, 236, 237, 311, 332, 425, 498, 782
BmiI	GGNNCC	8 cut(s)	153, 163, 217, 238, 265, 300, 413, 426
BmrFI	CCNGG	2 cut(s)	172, 786
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	2 cut(s)	194, 703
BmtI	GCTAGC	1 cut(s)	813
BmuI	ACTGGG	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	232, 785, 908
Bsc4I	CCNNNNNNNGG	8 cut(s)	171, 308, 408, 421, 422, 578, 659, 662
Bse1I	ACTGG	3 cut(s)	39, 481, 775
BseBI	CCWGG	2 cut(s)	172, 786
BseDI	CCNNGG	3 cut(s)	232, 785, 908
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	8 cut(s)	171, 308, 408, 421, 422, 578, 659, 662
BseMII	CTCAG	2 cut(s)	171, 327
BseNI	ACTGG	3 cut(s)	39, 481, 775
BseRI	GAGGAG	1 cut(s)	675
BseSI	GKGCMC	2 cut(s)	155, 240
BseXI	GCAGC	2 cut(s)	64, 834
BseYI	CCCAGC	2 cut(s)	26, 528
BsgI	GTGCAG	1 cut(s)	660
BshFI	GGCC	7 cut(s)	5, 153, 231, 238, 334, 541, 784
BsiHKAI	GWGCWC	1 cut(s)	446
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	8 cut(s)	171, 308, 408, 421, 422, 578, 659, 662
BsmFI	GGGAC	1 cut(s)	889
BsnI	GGCC	7 cut(s)	5, 153, 231, 238, 334, 541, 784
BsoBI	CYCGRG	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	466
Bsp120I	GGGCCC	2 cut(s)	151, 236
Bsp1286I	GDGCHC	3 cut(s)	155, 240, 446
Bsp143I	GATC	5 cut(s)	161, 215, 256, 411, 614
BspACI	CCGC	5 cut(s)	195, 225, 579, 750, 855
BspANI	GGCC	7 cut(s)	5, 153, 231, 238, 334, 541, 784
BspCNI	CTCAG	2 cut(s)	172, 328
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	8 cut(s)	153, 163, 217, 238, 265, 300, 413, 426
BspOI	GCTAGC	1 cut(s)	813
BspPI	GGATC	6 cut(s)	156, 169, 210, 223, 406, 419
BspT104I	TTCGAA	1 cut(s)	466
BsrI	ACTGG	3 cut(s)	39, 481, 775
BssECI	CCNNGG	3 cut(s)	232, 785, 908
BssMI	GATC	5 cut(s)	161, 215, 256, 411, 614
BssSI	CACGAG	1 cut(s)	657
BssT1I	CCWWGG	1 cut(s)	908
Bst2BI	CACGAG	1 cut(s)	657
Bst2UI	CCWGG	2 cut(s)	172, 786
Bst4CI	ACNGT	1 cut(s)	927
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstBI	TTCGAA	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	811
BstDEI	CTNAG	2 cut(s)	180, 336
BstDSI	CCRYGG	1 cut(s)	232
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	1 cut(s)	718
BstKTI	GATC	5 cut(s)	164, 218, 259, 414, 617
BstMBI	GATC	5 cut(s)	161, 215, 256, 411, 614
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 521, 538, 806
BstNI	CCWGG	2 cut(s)	172, 786
BstSCI	CCNGG	2 cut(s)	170, 784
BstSLI	GKGCMC	2 cut(s)	155, 240
BstV1I	GCAGC	2 cut(s)	64, 834
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	3 cut(s)	161, 215, 411
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	3 cut(s)	161, 215, 411
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	7 cut(s)	5, 153, 231, 238, 334, 541, 784
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	2 cut(s)	648, 820
BtsIMutI	CAGTG	3 cut(s)	177, 648, 820
Cac8I	GCNNGC	1 cut(s)	811
CaiI	CAGNNNCTG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	103
Cfr13I	GGNCC	9 cut(s)	151, 152, 236, 237, 311, 332, 425, 498, 782
Csp6I	GTAC	2 cut(s)	8, 42
CviAII	CATG	3 cut(s)	104, 575, 625
CviQI	GTAC	2 cut(s)	8, 42
DdeI	CTNAG	2 cut(s)	180, 336
DpnI	GATC	5 cut(s)	163, 217, 258, 413, 616
DpnII	GATC	5 cut(s)	161, 215, 256, 411, 614
EaeI	YGGCCR	2 cut(s)	3, 229
Ecl136II	GAGCTC	1 cut(s)	444
Eco130I	CCWWGG	1 cut(s)	908
Eco24I	GRGCYC	3 cut(s)	155, 240, 446
Eco47I	GGWCC	3 cut(s)	311, 425, 498
Eco53kI	GAGCTC	1 cut(s)	444
Eco57I	CTGAAG	2 cut(s)	83, 870
Eco88I	CYCGRG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	170, 784
EcoT14I	CCWWGG	1 cut(s)	908
EcoT38I	GRGCYC	3 cut(s)	155, 240, 446
ErhI	CCWWGG	1 cut(s)	908
FaeI	CATG	3 cut(s)	107, 578, 628
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	3 cut(s)	103, 574, 624
FauNDI	CATATG	1 cut(s)	420
Fnu4HI	GCNGC	4 cut(s)	53, 750, 848, 856
FokI	GGATG	1 cut(s)	725
FriOI	GRGCYC	3 cut(s)	155, 240, 446
Fsp4HI	GCNGC	4 cut(s)	53, 750, 848, 856
FspBI	CTAG	5 cut(s)	356, 492, 765, 810, 852
GluI	GCNGC	4 cut(s)	53, 750, 848, 856
GsaI	CCCAGC	2 cut(s)	30, 532
HaeIII	GGCC	7 cut(s)	5, 153, 231, 238, 334, 541, 784
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	3 cut(s)	107, 578, 628
HinfI	GANTC	6 cut(s)	134, 167, 380, 431, 568, 904
HpaII	CCGG	1 cut(s)	222
Hpy188I	TCNGA	7 cut(s)	166, 256, 268, 379, 567, 826, 889
Hpy188III	TCNNGA	5 cut(s)	104, 290, 402, 428, 765
HpyAV	CCTTC	2 cut(s)	489, 705
HpyCH4III	ACNGT	1 cut(s)	927
HpyCH4V	TGCA	6 cut(s)	641, 646, 674, 716, 728, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 521, 538, 806
HpyF3I	CTNAG	2 cut(s)	180, 336
Hsp92II	CATG	3 cut(s)	107, 578, 628
Kzo9I	GATC	5 cut(s)	161, 215, 256, 411, 614
Lsp1109I	GCAGC	2 cut(s)	64, 834
LweI	GCATC	2 cut(s)	194, 703
MaeI	CTAG	5 cut(s)	356, 492, 765, 810, 852
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	5 cut(s)	163, 217, 258, 413, 616
MboI	GATC	5 cut(s)	161, 215, 256, 411, 614
MboII	GAAGA	4 cut(s)	83, 86, 89, 469
MfeI	CAATTG	1 cut(s)	689
MflI	RGATCY	3 cut(s)	161, 215, 411
MhlI	GDGCHC	3 cut(s)	155, 240, 446
MluCI	AATT	6 cut(s)	83, 373, 628, 689, 743, 774
MlyI	GAGTC	4 cut(s)	374, 425, 562, 898
MroXI	GAANNNNTTC	1 cut(s)	373
MseI	TTAA	1 cut(s)	777
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	172, 786
MunI	CAATTG	1 cut(s)	689
MvaI	CCWGG	2 cut(s)	172, 786
MwoI	GCNNNNNNNGC	4 cut(s)	58, 521, 538, 806
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	5 cut(s)	161, 215, 256, 411, 614
NheI	GCTAGC	1 cut(s)	809
NlaIII	CATG	3 cut(s)	107, 578, 628
NlaIV	GGNNCC	8 cut(s)	153, 163, 217, 238, 265, 300, 413, 426
NspV	TTCGAA	1 cut(s)	466
PaeR7I	CTCGAG	1 cut(s)	290
PagI	TCATGA	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	134, 167
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	4 cut(s)	54, 751, 849, 857
PleI	GAGTC	4 cut(s)	374, 425, 562, 898
PpsI	GAGTC	4 cut(s)	374, 425, 562, 898
PpuMI	RGGWCCY	1 cut(s)	425
Psp124BI	GAGCTC	1 cut(s)	446
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	2 cut(s)	170, 784
PspFI	CCCAGC	2 cut(s)	26, 528
PspGI	CCWGG	2 cut(s)	170, 784
PspN4I	GGNNCC	8 cut(s)	153, 163, 217, 238, 265, 300, 413, 426
PspOMI	GGGCCC	2 cut(s)	151, 236
PspPI	GGNCC	9 cut(s)	151, 152, 236, 237, 311, 332, 425, 498, 782
PspPPI	RGGWCCY	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	61
PsuI	RGATCY	3 cut(s)	161, 215, 411
RsaI	GTAC	2 cut(s)	9, 43
RsaNI	GTAC	2 cut(s)	8, 42
SacI	GAGCTC	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	4 cut(s)	53, 750, 848, 856
Sau3AI	GATC	5 cut(s)	161, 215, 256, 411, 614
Sau96I	GGNCC	9 cut(s)	151, 152, 236, 237, 311, 332, 425, 498, 782
SchI	GAGTC	4 cut(s)	374, 425, 562, 898
ScrFI	CCNGG	2 cut(s)	172, 786
SduI	GDGCHC	3 cut(s)	155, 240, 446
SetI	ASST	9 cut(s)	63, 254, 280, 446, 493, 500, 667, 901, 914
SfaNI	GCATC	2 cut(s)	194, 703
Sfr274I	CTCGAG	1 cut(s)	290
SfuI	TTCGAA	1 cut(s)	466
SinI	GGWCC	3 cut(s)	311, 425, 498
SlaI	CTCGAG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	290, 437
SmoI	CTYRAG	2 cut(s)	290, 437
Sse9I	AATT	6 cut(s)	83, 373, 628, 689, 743, 774
SsiI	CCGC	5 cut(s)	195, 225, 579, 750, 855
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	5 cut(s)	356, 492, 765, 810, 852
SstI	GAGCTC	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	170, 784
StyI	CCWWGG	1 cut(s)	908
TaaI	ACNGT	1 cut(s)	927
TaqI	TCGA	2 cut(s)	291, 466
TasI	AATT	6 cut(s)	83, 373, 628, 689, 743, 774
TauI	GCSGC	2 cut(s)	752, 858
TfiI	GAWTC	2 cut(s)	134, 167
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	3 cut(s)	184, 648, 820
TseI	GCWGC	2 cut(s)	52, 847
TspDTI	ATGAA	6 cut(s)	92, 134, 470, 525, 641, 674
TspRI	CASTG	3 cut(s)	184, 648, 820
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	3 cut(s)	311, 425, 498
XagI	CCTNNNNNAGG	1 cut(s)	657
XapI	RAATTY	1 cut(s)	628
XbaI	TCTAGA	1 cut(s)	764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XhoI	CTCGAG	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	373
XspI	CTAG	5 cut(s)	356, 492, 765, 810, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.