RchiOBHm_Chr6g0312851

TIFY 8-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
69387397 .. 69392497
5101 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28146

Sequence Viewer

Length: 1317 bp
ATGGCCGTACTGAAAATGGCTCTGCCCAGCAACAATGCCAGTACCCAAAAGCAGCAGAAGCTGAAGCAGGAAGAAGAAGACCAATTAGTGAAGCCAATGTTTCATGACTTTCTGGGTATGAAGCCATCTACTGATTCCCCTGTTGTTTTGGGCCCAAAAGGATCCGATTCCAGGCTCACTGAGGCATCTCCCTCCGCTTCTGCTTCACTTGGGGGATCCTCCGGCGGTGGCCGTGGGCCCATCTCCACCACCTCTGATCTGGGTTCCGAAAGACAAGCTGGAAATCATCTCGAGGGGGTTCCATATTATGGTCCAAGAAGCGATATTTCTGGGCCTGAGATAAGTAACAGGATACTAGGCAGTAAGAGAAGTAATTCAGACTCTACTTTTATGGGTTCATCCAGAGATGGGATCCCTCATATGGGTCCTGACTCCCTTGAGAGCTCACATTTGATGAAGATGTTTCGAAATGGAACTGGGGGAGAGCGACCTAGAAGGTCCATTGACGATGAAGCAGTCTTTGCTACCCAGCCAATGAGGCCAACTTCTGCTAATCTCATATTTCAGACTCCACATGGCGGTAGAGTTGATAACAATATTTCCAAGTGGGAACGATCTACTCCCATGAATTTGGGTGGTGCAGTGCAATACCCTCCACGAGGAGGTCATTTTGCACCCTTTGTTCATCAATTGCCTTCTAACAGATTTAGGGATGCAAATGCTGGTGCAAATAATATATCTCAATTAGCCGCTGATGAGGGGTCTAGAACTGGAATTAAAGGACCAGGGATATTGAGTGCCATCAATGCTAGCAGTGGTGCTTCTGATAGAAACTCATCTGTGGTGCTGCCTAGCGGCAGTAGGCAGAAATCTGGGACTAATACTTCAGAGCCAGAACCTTTGACTCCAAGTCGGCATGGATTTGCATCTGCTAACCGGCAGATGACCATATTTTATGGCGGTCAAGCTCATGTTTTCGATGATGTCCACCCAAACAAGGCAGATGTCATAATGGCCTTAGCTGGATCAAACGGAGGATCTTGGTCAACAACCTACTCACTAAAACCTACTGTGAAGCCGGGTAGTGAAAGTCACATGCCTAGTGGAGAGGTTGAAACTGGTACAGCAAGTAATGTAGGGTTGGTACGAGAATACCGTGGGAGGCTATCTATTCCTGGAAATTCAAGTCCTGGAGTGGGGTTTGCTGATCGGATATTGACAGCCGCAGGTGGCCATCAGGGCAGCAATTTAGCCAAAGATACAAGAAACCCAGTTCAAGCTACAGAGCCTGGTTCTAAAGAGAAAATTGAACTGTGA

Protein Analysis

438

Amino Acids

46.09

Weight (kDa)

9.15

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 310 - 342 6.3e-15 tify domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1217
Acc36I ACCTGC 1 cut(s) 1217
AccB7I CCANNNNNTGG 1 cut(s) 308
AciI CCGC 7 cut(s) 195, 225, 579, 750, 855, 960, 1224
AclWI GGATC 8 cut(s) 156, 169, 210, 223, 406, 419, 1033, 1045
AcoI YGGCCR 3 cut(s) 3, 229, 1231
AcsI RAATTY 2 cut(s) 628, 1180
AcuI CTGAAG 2 cut(s) 83, 870
AfaI GTAC 4 cut(s) 9, 43, 1123, 1146
AgsI TTSAA 4 cut(s) 1115, 1185, 1277, 1310
AhdI GACNNNNNGTC 1 cut(s) 909
AjnI CCWGG 5 cut(s) 170, 784, 1174, 1189, 1288
AluBI AGCT 6 cut(s) 61, 278, 444, 968, 1022, 1280
AluI AGCT 6 cut(s) 61, 278, 444, 968, 1022, 1280
Alw21I GWGCWC 1 cut(s) 446
AlwI GGATC 8 cut(s) 156, 169, 210, 223, 406, 419, 1033, 1045
AlwNI CAGNNNCTG 2 cut(s) 61, 1289
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 8 cut(s) 3, 151, 229, 236, 332, 539, 1014, 1231
ApaI GGGCCC 2 cut(s) 155, 240
ApeKI GCWGC 3 cut(s) 52, 847, 1242
ApoI RAATTY 2 cut(s) 628, 1180
Asp700I GAANNNNTTC 1 cut(s) 373
AspS9I GGNCC 9 cut(s) 151, 152, 236, 237, 311, 332, 425, 498, 782
AsuC2I CCSGG 1 cut(s) 1080
AsuII TTCGAA 1 cut(s) 466
AsuNHI GCTAGC 1 cut(s) 809
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 4 cut(s) 311, 425, 498, 782
BaeGI GKGCMC 2 cut(s) 155, 240
BalI TGGCCA 1 cut(s) 1233
BamHI GGATCC 3 cut(s) 161, 215, 411
BanII GRGCYC 3 cut(s) 155, 240, 446
BauI CACGAG 1 cut(s) 657
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 3 cut(s) 64, 834, 1254
BccI CCATC 5 cut(s) 133, 248, 401, 809, 1242
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 5 cut(s) 172, 786, 1176, 1191, 1290
BciVI GTATCC 1 cut(s) 345
BcnI CCSGG 1 cut(s) 1080
BfaI CTAG 6 cut(s) 356, 492, 765, 810, 852, 1101
BfmI CTRYAG 1 cut(s) 1281
BfuAI ACCTGC 1 cut(s) 1217
BfuI GTATCC 1 cut(s) 345
BglI GCCNNNNNGGC 2 cut(s) 538, 1239
BisI GCNGC 6 cut(s) 53, 750, 848, 856, 1224, 1243
BlsI GCNGC 6 cut(s) 54, 751, 849, 857, 1225, 1244
Bme1390I CCNGG 6 cut(s) 172, 786, 1080, 1176, 1191, 1290
Bme18I GGWCC 4 cut(s) 311, 425, 498, 782
BmeRI GACNNNNNGTC 1 cut(s) 909
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 9 cut(s) 151, 152, 236, 237, 311, 332, 425, 498, 782
BmiI GGNNCC 8 cut(s) 153, 163, 217, 238, 265, 300, 413, 426
BmrFI CCNGG 6 cut(s) 172, 786, 1080, 1176, 1191, 1290
BmrI ACTGGG 2 cut(s) 486, 1265
BmsI GCATC 3 cut(s) 194, 703, 935
BmtI GCTAGC 1 cut(s) 813
BmuI ACTGGG 2 cut(s) 486, 1265
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 1212
Bpu10I CCTNAGC 1 cut(s) 1018
Bpu14I TTCGAA 1 cut(s) 466
BpuEI CTTGAG 1 cut(s) 458
BpuMI CCSGG 1 cut(s) 1080
BsaBI GATNNNNATC 1 cut(s) 925
BsaJI CCNNGG 3 cut(s) 232, 785, 1156
Bse118I RCCGGY 1 cut(s) 936
Bse1I ACTGG 5 cut(s) 39, 481, 775, 1123, 1271
Bse8I GATNNNNATC 1 cut(s) 925
BseBI CCWGG 5 cut(s) 172, 786, 1176, 1191, 1290
BseDI CCNNGG 3 cut(s) 232, 785, 1156
BseGI GGATG 2 cut(s) 398, 718
BseJI GATNNNNATC 1 cut(s) 925
BseMII CTCAG 2 cut(s) 171, 327
BseNI ACTGG 5 cut(s) 39, 481, 775, 1123, 1271
BseRI GAGGAG 1 cut(s) 675
BseSI GKGCMC 2 cut(s) 155, 240
BseXI GCAGC 3 cut(s) 64, 834, 1254
BseYI CCCAGC 2 cut(s) 26, 528
BsgI GTGCAG 1 cut(s) 660
BshFI GGCC 8 cut(s) 5, 153, 231, 238, 334, 541, 1016, 1233
BsiHKAI GWGCWC 1 cut(s) 446
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 3 cut(s) 222, 937, 1079
BslFI GGGAC 1 cut(s) 889
BsmFI GGGAC 1 cut(s) 889
BsnI GGCC 8 cut(s) 5, 153, 231, 238, 334, 541, 1016, 1233
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 466
Bsp120I GGGCCC 2 cut(s) 151, 236
Bsp1286I GDGCHC 3 cut(s) 155, 240, 446
Bsp143I GATC 8 cut(s) 161, 215, 256, 411, 614, 1025, 1037, 1207
BspACI CCGC 7 cut(s) 195, 225, 579, 750, 855, 960, 1224
BspANI GGCC 8 cut(s) 5, 153, 231, 238, 334, 541, 1016, 1233
BspCNI CTCAG 2 cut(s) 172, 328
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 8 cut(s) 153, 163, 217, 238, 265, 300, 413, 426
BspMI ACCTGC 1 cut(s) 1217
BspOI GCTAGC 1 cut(s) 813
BspPI GGATC 8 cut(s) 156, 169, 210, 223, 406, 419, 1033, 1045
BspT104I TTCGAA 1 cut(s) 466
BsrFI RCCGGY 1 cut(s) 936
BsrI ACTGG 5 cut(s) 39, 481, 775, 1123, 1271
BssAI RCCGGY 1 cut(s) 936
BssECI CCNNGG 3 cut(s) 232, 785, 1156
BssMI GATC 8 cut(s) 161, 215, 256, 411, 614, 1025, 1037, 1207
BssSI CACGAG 1 cut(s) 657
Bst2BI CACGAG 1 cut(s) 657
Bst2UI CCWGG 5 cut(s) 172, 786, 1176, 1191, 1290
Bst4CI ACNGT 3 cut(s) 1072, 1157, 1314
BstAPI GCANNNNNTGC 1 cut(s) 521
BstBI TTCGAA 1 cut(s) 466
BstC8I GCNNGC 1 cut(s) 811
BstDEI CTNAG 3 cut(s) 180, 336, 1018
BstDSI CCRYGG 2 cut(s) 232, 1156
BstENI CCTNNNNNAGG 1 cut(s) 657
BstF5I GGATG 2 cut(s) 398, 718
BstKTI GATC 8 cut(s) 164, 218, 259, 414, 617, 1028, 1040, 1210
BstMBI GATC 8 cut(s) 161, 215, 256, 411, 614, 1025, 1037, 1207
BstMWI GCNNNNNNNGC 5 cut(s) 58, 521, 538, 806, 1239
BstNI CCWGG 5 cut(s) 172, 786, 1176, 1191, 1290
BstNSI RCATGY 1 cut(s) 1099
BstSCI CCNGG 6 cut(s) 170, 784, 1078, 1174, 1189, 1288
BstSFI CTRYAG 1 cut(s) 1281
BstSLI GKGCMC 2 cut(s) 155, 240
BstV1I GCAGC 3 cut(s) 64, 834, 1254
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 4 cut(s) 161, 215, 411, 1037
BstXI CCANNNNNNTGG 1 cut(s) 631
BstYI RGATCY 4 cut(s) 161, 215, 411, 1037
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 8 cut(s) 5, 153, 231, 238, 334, 541, 1016, 1233
BtgI CCRYGG 2 cut(s) 232, 1156
BtsCI GGATG 2 cut(s) 398, 718
BtsI GCAGTG 2 cut(s) 648, 820
BtsIMutI CAGTG 3 cut(s) 177, 648, 820
BveI ACCTGC 1 cut(s) 1217
Cac8I GCNNGC 1 cut(s) 811
CaiI CAGNNNCTG 2 cut(s) 61, 1289
CciI TCATGA 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 936
Cfr13I GGNCC 9 cut(s) 151, 152, 236, 237, 311, 332, 425, 498, 782
Csp6I GTAC 4 cut(s) 8, 42, 1122, 1145
CviAII CATG 6 cut(s) 104, 575, 625, 917, 971, 1096
CviQI GTAC 4 cut(s) 8, 42, 1122, 1145
DdeI CTNAG 3 cut(s) 180, 336, 1018
DpnI GATC 8 cut(s) 163, 217, 258, 413, 616, 1027, 1039, 1209
DpnII GATC 8 cut(s) 161, 215, 256, 411, 614, 1025, 1037, 1207
DriI GACNNNNNGTC 1 cut(s) 909
EaeI YGGCCR 3 cut(s) 3, 229, 1231
Eam1105I GACNNNNNGTC 1 cut(s) 909
Ecl136II GAGCTC 1 cut(s) 444
Eco24I GRGCYC 3 cut(s) 155, 240, 446
Eco47I GGWCC 4 cut(s) 311, 425, 498, 782
Eco53kI GAGCTC 1 cut(s) 444
Eco57I CTGAAG 2 cut(s) 83, 870
Eco88I CYCGRG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 444
EcoNI CCTNNNNNAGG 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 425
EcoRII CCWGG 5 cut(s) 170, 784, 1174, 1189, 1288
EcoT38I GRGCYC 3 cut(s) 155, 240, 446
FaeI CATG 6 cut(s) 107, 578, 628, 920, 974, 1099
FaqI GGGAC 1 cut(s) 889
FatI CATG 6 cut(s) 103, 574, 624, 916, 970, 1095
FauNDI CATATG 1 cut(s) 420
Fnu4HI GCNGC 6 cut(s) 53, 750, 848, 856, 1224, 1243
FokI GGATG 2 cut(s) 385, 725
FriOI GRGCYC 3 cut(s) 155, 240, 446
Fsp4HI GCNGC 6 cut(s) 53, 750, 848, 856, 1224, 1243
FspBI CTAG 6 cut(s) 356, 492, 765, 810, 852, 1101
GluI GCNGC 6 cut(s) 53, 750, 848, 856, 1224, 1243
GsaI CCCAGC 2 cut(s) 30, 532
GsuI CTGGAG 1 cut(s) 1212
HaeIII GGCC 8 cut(s) 5, 153, 231, 238, 334, 541, 1016, 1233
HapII CCGG 3 cut(s) 222, 937, 1079
Hin1II CATG 6 cut(s) 107, 578, 628, 920, 974, 1099
HincII GTYRAC 1 cut(s) 1047
HindII GTYRAC 1 cut(s) 1047
HinfI GANTC 6 cut(s) 134, 167, 380, 431, 568, 904
HpaII CCGG 3 cut(s) 222, 937, 1079
Hpy166II GTNNAC 2 cut(s) 988, 1047
Hpy188I TCNGA 8 cut(s) 166, 256, 268, 379, 567, 826, 889, 1212
Hpy188III TCNNGA 5 cut(s) 104, 290, 402, 428, 765
Hpy8I GTNNAC 2 cut(s) 988, 1047
HpyAV CCTTC 2 cut(s) 489, 705
HpyCH4III ACNGT 3 cut(s) 1072, 1157, 1314
HpyCH4V TGCA 6 cut(s) 641, 646, 674, 716, 728, 926
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 521, 538, 806, 1239
HpyF3I CTNAG 3 cut(s) 180, 336, 1018
Hsp92II CATG 6 cut(s) 107, 578, 628, 920, 974, 1099
Kzo9I GATC 8 cut(s) 161, 215, 256, 411, 614, 1025, 1037, 1207
Lsp1109I GCAGC 3 cut(s) 64, 834, 1254
LweI GCATC 3 cut(s) 194, 703, 935
MaeI CTAG 6 cut(s) 356, 492, 765, 810, 852, 1101
MaeIII GTNAC 2 cut(s) 344, 1091
MalI GATC 8 cut(s) 163, 217, 258, 413, 616, 1027, 1039, 1209
MboI GATC 8 cut(s) 161, 215, 256, 411, 614, 1025, 1037, 1207
MboII GAAGA 4 cut(s) 83, 86, 89, 469
MfeI CAATTG 1 cut(s) 689
MflI RGATCY 4 cut(s) 161, 215, 411, 1037
MhlI GDGCHC 3 cut(s) 155, 240, 446
MlsI TGGCCA 1 cut(s) 1233
MluCI AATT 9 cut(s) 83, 373, 628, 689, 743, 774, 1180, 1246, 1305
MluNI TGGCCA 1 cut(s) 1233
MlyI GAGTC 4 cut(s) 374, 425, 562, 898
Mox20I TGGCCA 1 cut(s) 1233
MroXI GAANNNNTTC 1 cut(s) 373
MscI TGGCCA 1 cut(s) 1233
MseI TTAA 1 cut(s) 777
Msp20I TGGCCA 1 cut(s) 1233
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 3 cut(s) 222, 937, 1079
MspR9I CCNGG 6 cut(s) 172, 786, 1080, 1176, 1191, 1290
MunI CAATTG 1 cut(s) 689
MvaI CCWGG 5 cut(s) 172, 786, 1176, 1191, 1290
MwoI GCNNNNNNNGC 5 cut(s) 58, 521, 538, 806, 1239
NciI CCSGG 1 cut(s) 1080
NdeI CATATG 1 cut(s) 420
NdeII GATC 8 cut(s) 161, 215, 256, 411, 614, 1025, 1037, 1207
NheI GCTAGC 1 cut(s) 809
NlaIII CATG 6 cut(s) 107, 578, 628, 920, 974, 1099
NlaIV GGNNCC 8 cut(s) 153, 163, 217, 238, 265, 300, 413, 426
NmuCI GTSAC 1 cut(s) 1091
NspI RCATGY 1 cut(s) 1099
NspV TTCGAA 1 cut(s) 466
PaeR7I CTCGAG 1 cut(s) 290
PagI TCATGA 1 cut(s) 103
PaqCI CACCTGC 1 cut(s) 1217
PcsI WCGNNNNNNNCGW 1 cut(s) 1153
PdmI GAANNNNTTC 1 cut(s) 373
PfeI GAWTC 2 cut(s) 134, 167
PflMI CCANNNNNTGG 1 cut(s) 308
PfoI TCCNGGA 2 cut(s) 1174, 1189
PkrI GCNGC 6 cut(s) 54, 751, 849, 857, 1225, 1244
PleI GAGTC 4 cut(s) 374, 425, 562, 898
PpsI GAGTC 4 cut(s) 374, 425, 562, 898
PpuMI RGGWCCY 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 425
Psp6I CCWGG 5 cut(s) 170, 784, 1174, 1189, 1288
PspFI CCCAGC 2 cut(s) 26, 528
PspGI CCWGG 5 cut(s) 170, 784, 1174, 1189, 1288
PspN4I GGNNCC 8 cut(s) 153, 163, 217, 238, 265, 300, 413, 426
PspOMI GGGCCC 2 cut(s) 151, 236
PspPI GGNCC 9 cut(s) 151, 152, 236, 237, 311, 332, 425, 498, 782
PspPPI RGGWCCY 1 cut(s) 425
PstNI CAGNNNCTG 2 cut(s) 61, 1289
PsuI RGATCY 4 cut(s) 161, 215, 411, 1037
RsaI GTAC 4 cut(s) 9, 43, 1123, 1146
RsaNI GTAC 4 cut(s) 8, 42, 1122, 1145
SacI GAGCTC 1 cut(s) 446
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 6 cut(s) 53, 750, 848, 856, 1224, 1243
Sau3AI GATC 8 cut(s) 161, 215, 256, 411, 614, 1025, 1037, 1207
Sau96I GGNCC 9 cut(s) 151, 152, 236, 237, 311, 332, 425, 498, 782
SchI GAGTC 4 cut(s) 374, 425, 562, 898
ScrFI CCNGG 6 cut(s) 172, 786, 1080, 1176, 1191, 1290
SduI GDGCHC 3 cut(s) 155, 240, 446
SfaNI GCATC 3 cut(s) 194, 703, 935
SfcI CTRYAG 1 cut(s) 1281
Sfr274I CTCGAG 1 cut(s) 290
SfuI TTCGAA 1 cut(s) 466
SinI GGWCC 4 cut(s) 311, 425, 498, 782
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 290, 437
SmoI CTYRAG 2 cut(s) 290, 437
Sse9I AATT 9 cut(s) 83, 373, 628, 689, 743, 774, 1180, 1246, 1305
SsiI CCGC 7 cut(s) 195, 225, 579, 750, 855, 960, 1224
SspI AATATT 1 cut(s) 598
SspMI CTAG 6 cut(s) 356, 492, 765, 810, 852, 1101
SstI GAGCTC 1 cut(s) 446
StyD4I CCNGG 6 cut(s) 170, 784, 1078, 1174, 1189, 1288
TaaI ACNGT 3 cut(s) 1072, 1157, 1314
TaqI TCGA 3 cut(s) 291, 466, 978
TasI AATT 9 cut(s) 83, 373, 628, 689, 743, 774, 1180, 1246, 1305
TauI GCSGC 3 cut(s) 752, 858, 1226
TfiI GAWTC 2 cut(s) 134, 167
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 3 cut(s) 184, 648, 820
TseFI GTSAC 1 cut(s) 1091
TseI GCWGC 3 cut(s) 52, 847, 1242
Tsp45I GTSAC 1 cut(s) 1091
TspDTI ATGAA 7 cut(s) 92, 134, 387, 470, 525, 641, 674
TspGWI ACGGA 1 cut(s) 1047
TspRI CASTG 3 cut(s) 184, 648, 820
Van91I CCANNNNNTGG 1 cut(s) 308
VpaK11BI GGWCC 4 cut(s) 311, 425, 498, 782
XagI CCTNNNNNAGG 1 cut(s) 657
XapI RAATTY 2 cut(s) 628, 1180
XbaI TCTAGA 1 cut(s) 764
XceI RCATGY 1 cut(s) 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XhoI CTCGAG 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 373
XspI CTAG 6 cut(s) 356, 492, 765, 810, 852, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.