Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008601

Physical Location & Seq

Genomic Coordinates Forward (+)

6937156 .. 6938668

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTGTTCTGAAAATGGCCCAGCAAGGCATCCCCAACAGCAATGCCACAACTCTCAGCAGCCAACAGCAAAAGCAGCAGCCGCAGAAGCAGAAGCTAGAGGAGCAGCAGCAGGGGAAGCACACCATCTTCCATGATTTTCTGGGCATGAAGCCTGGAGATTCCCCTGTGGTTTTAGCCCCAAAAGCCTCCACCGATTGTAGGCTCTCTGAGCCTTCTCCCTCCGCCTCCGCTTCCCTTGGGGCTTCCTCCGGCGGTGGCCGTGGCCCCATCTCCACCACCTCTGATCTGGGTTCCGAAAGACAGGCTGGAAATCATCTTGAGGGGGTTCCATTCTATGGCCCGAGGAGTGATATTTCTGTGCCTGAGATAAGTAACAGGTTACTAGGAAGTAAGCGGAGTAATTCAGACTCGACTTTTATGGGTTCATCCAGAGATGGTGTCCCTCATATGGGTCCTGATCACCTTGAGAGGTCGCATTTGATGAAGGTATGCTTCGACATGGACCTGGGGGAGAGCGACCTCGAAGGTCCAATGACGATGAAGCAGTCTTTGCTACACAGCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tify

Protein Analysis

190

Amino Acids

20.24

Weight (kDa)

6.43

Isoelectric Point (pI)

62.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32570 AT4G32570
fragaria_vesca	FvH4_2g30050 FvH4_2g30050 FvH4_2g30050 FvH4_2g30050
malus_domestica	MD08G1137500.v1.1 MD15G1116100.v1.1
prunus_persica	Prupe.1G467500_v2.0.a1
pyrus_communis	pycom08g11640 pycom15g10470
rosa_chinensis	RchiOBHm_Chr6g0312851
rosa_laevigata	RLG00000010292
rosa_multiflora	Rmu_sc0008049.1_g000009
rosa_roxburghii	Rroxscaffold_7G00156430
rosa_rugosa	Rorug06G0400000 Rorug06G0400100 Rorug06G0400200
rosa_samantha	Rh6AG517300 Rh6BG528700 Rh6CG533400 Rh6DG519900
rosa_wichuraiana	Rw6G044940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	338
AciI	CCGC	5 cut(s)	83, 225, 231, 255, 397
AcoI	YGGCCR	1 cut(s)	259
AfiI	CCNNNNNNNGG	4 cut(s)	201, 338, 451, 452
AjnI	CCWGG	2 cut(s)	154, 507
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
AlwNI	CAGNNNCTG	1 cut(s)	567
Ama87I	CYCGRG	1 cut(s)	343
AoxI	GGCC	4 cut(s)	18, 259, 265, 340
ApeKI	GCWGC	5 cut(s)	60, 76, 79, 106, 109
AspS9I	GGNCC	6 cut(s)	19, 266, 341, 455, 505, 530
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	3 cut(s)	455, 505, 530
BbvI	GCAGC	5 cut(s)	72, 88, 91, 118, 121
BccI	CCATC	3 cut(s)	134, 278, 431
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	2 cut(s)	156, 509
BclI	TGATCA	1 cut(s)	460
BfaI	CTAG	2 cut(s)	98, 386
BisI	GCNGC	6 cut(s)	61, 77, 80, 83, 107, 110
BlsI	GCNGC	6 cut(s)	62, 78, 81, 84, 108, 111
Bme1390I	CCNGG	2 cut(s)	156, 509
Bme18I	GGWCC	3 cut(s)	455, 505, 530
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	6 cut(s)	19, 266, 341, 455, 505, 530
BmiI	GGNNCC	4 cut(s)	268, 295, 330, 456
BmrFI	CCNGG	2 cut(s)	156, 509
BmsI	GCATC	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	341, 488
BsaJI	CCNNGG	4 cut(s)	238, 262, 344, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	201, 338, 451, 452
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	156, 509
BseDI	CCNNGG	4 cut(s)	238, 262, 344, 508
BseGI	GGATG	2 cut(s)	30, 428
BseLI	CCNNNNNNNGG	4 cut(s)	201, 338, 451, 452
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	3 cut(s)	70, 201, 357
BseRI	GAGGAG	2 cut(s)	116, 361
BseXI	GCAGC	5 cut(s)	72, 88, 91, 118, 121
BseYI	CCCAGC	1 cut(s)	21
BshFI	GGCC	4 cut(s)	20, 261, 267, 342
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	4 cut(s)	201, 338, 451, 452
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	4 cut(s)	20, 261, 267, 342
BsoBI	CYCGRG	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	286, 460
BspACI	CCGC	5 cut(s)	83, 225, 231, 255, 397
BspANI	GGCC	4 cut(s)	20, 261, 267, 342
BspCNI	CTCAG	3 cut(s)	69, 202, 358
BspLI	GGNNCC	4 cut(s)	268, 295, 330, 456
BsrDI	GCAATG	1 cut(s)	49
BssECI	CCNNGG	4 cut(s)	238, 262, 344, 508
BssMI	GATC	2 cut(s)	286, 460
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	2 cut(s)	156, 509
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstDEI	CTNAG	3 cut(s)	56, 210, 366
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	2 cut(s)	30, 428
BstKTI	GATC	2 cut(s)	289, 463
BstMBI	GATC	2 cut(s)	286, 460
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 82, 88, 103, 118, 185, 211, 553
BstNI	CCWGG	2 cut(s)	156, 509
BstSCI	CCNGG	2 cut(s)	154, 507
BstV1I	GCAGC	5 cut(s)	72, 88, 91, 118, 121
BsuRI	GGCC	4 cut(s)	20, 261, 267, 342
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	30, 428
BtsIMutI	CAGTG	1 cut(s)	565
CaiI	CAGNNNCTG	1 cut(s)	567
Cfr13I	GGNCC	6 cut(s)	19, 266, 341, 455, 505, 530
CviAII	CATG	3 cut(s)	134, 148, 502
DdeI	CTNAG	3 cut(s)	56, 210, 366
DpnI	GATC	2 cut(s)	288, 462
DpnII	GATC	2 cut(s)	286, 460
EaeI	YGGCCR	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	238
Eco47I	GGWCC	3 cut(s)	455, 505, 530
Eco88I	CYCGRG	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	154, 507
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	3 cut(s)	137, 151, 505
FaiI	YATR	8 cut(s)	135, 149, 339, 422, 450, 452, 493, 503
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	3 cut(s)	133, 147, 501
FauNDI	CATATG	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	6 cut(s)	61, 77, 80, 83, 107, 110
FokI	GGATG	2 cut(s)	17, 415
Fsp4HI	GCNGC	6 cut(s)	61, 77, 80, 83, 107, 110
FspBI	CTAG	2 cut(s)	98, 386
GluI	GCNGC	6 cut(s)	61, 77, 80, 83, 107, 110
GsaI	CCCAGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	4 cut(s)	20, 261, 267, 342
HapII	CCGG	1 cut(s)	252
Hin1II	CATG	3 cut(s)	137, 151, 505
HinfI	GANTC	2 cut(s)	161, 410
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	455
Hpy188I	TCNGA	5 cut(s)	12, 211, 286, 298, 409
Hpy188III	TCNNGA	3 cut(s)	320, 432, 458
HpyAV	CCTTC	3 cut(s)	225, 481, 521
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 82, 88, 103, 118, 185, 211, 553
HpyF3I	CTNAG	3 cut(s)	56, 210, 366
Hsp92II	CATG	3 cut(s)	137, 151, 505
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	286, 460
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	5 cut(s)	72, 88, 91, 118, 121
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	2 cut(s)	98, 386
MaeIII	GTNAC	2 cut(s)	374, 381
MalI	GATC	2 cut(s)	288, 462
MboI	GATC	2 cut(s)	286, 460
MboII	GAAGA	1 cut(s)	121
MluCI	AATT	1 cut(s)	403
MlyI	GAGTC	1 cut(s)	404
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	2 cut(s)	156, 509
MvaI	CCWGG	2 cut(s)	156, 509
MwoI	GCNNNNNNNGC	8 cut(s)	76, 82, 88, 103, 118, 185, 211, 553
NdeI	CATATG	1 cut(s)	450
NdeII	GATC	2 cut(s)	286, 460
NlaIII	CATG	3 cut(s)	137, 151, 505
NlaIV	GGNNCC	4 cut(s)	268, 295, 330, 456
PfeI	GAWTC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	6 cut(s)	62, 78, 81, 84, 108, 111
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PpuMI	RGGWCCY	1 cut(s)	455
Psp5II	RGGWCCY	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	154, 507
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	2 cut(s)	154, 507
PspN4I	GGNNCC	4 cut(s)	268, 295, 330, 456
PspPI	GGNCC	6 cut(s)	19, 266, 341, 455, 505, 530
PspPPI	RGGWCCY	1 cut(s)	455
PstNI	CAGNNNCTG	1 cut(s)	567
SatI	GCNGC	6 cut(s)	61, 77, 80, 83, 107, 110
Sau3AI	GATC	2 cut(s)	286, 460
Sau96I	GGNCC	6 cut(s)	19, 266, 341, 455, 505, 530
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	2 cut(s)	156, 509
SetI	ASST	9 cut(s)	99, 284, 383, 468, 476, 492, 510, 525, 532
SfaNI	GCATC	1 cut(s)	39
SinI	GGWCC	3 cut(s)	455, 505, 530
SmlI	CTYRAG	2 cut(s)	320, 467
SmoI	CTYRAG	2 cut(s)	320, 467
Sse9I	AATT	1 cut(s)	403
SsiI	CCGC	5 cut(s)	83, 225, 231, 255, 397
SspMI	CTAG	2 cut(s)	98, 386
StyD4I	CCNGG	2 cut(s)	154, 507
StyI	CCWWGG	1 cut(s)	238
TaqI	TCGA	3 cut(s)	413, 498, 525
TasI	AATT	1 cut(s)	403
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	161
TseI	GCWGC	5 cut(s)	60, 76, 79, 106, 109
TspDTI	ATGAA	4 cut(s)	164, 417, 500, 557
Van91I	CCANNNNNTGG	1 cut(s)	338
VpaK11BI	GGWCC	3 cut(s)	455, 505, 530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	2 cut(s)	98, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.