Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008601

Physical Location & Seq

Genomic Coordinates Forward (+)

54476742 .. 54477176

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0400000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGTCGTCCTCCGCTGCTTCTCGATTGGGTTTGGGGATAAGGACTGCTTCTTCCTCCACCGCCAGCACAATCGTGGAGCCTCGAGGCCACATTCTAAGGGCCACCGGCCGGAAGGACCGCCACAGCAAGGTCTGCACCGCCAAAGGCCCCAGGGGCCATCGCGTCTGGCTCGCCGCCCACACCGCCATTCAATTCTACGACGTGCAAGACCGGCTCGGATACGATCGGCCCAGCAAGGCCGTCGATTGGCTCATCAAGAAAGCCAAGGCTGCAATCGACGAGCTCGACGAACTGCCGCCGTGGAACTCGAACTCAATTTCTGTTCAGACAACATGCATCTTCTCCGACGGTGCCGATATCCGCCGCGCAGGACATGCAGAACGCGAGCCTCCATTTCTCGATGGTGGAGGCTCCAAGTTCTTTGTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tify

Protein Analysis

144

Amino Acids

15.65

Weight (kDa)

9.55

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	37 - 101	1.5e-27	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32570 AT4G32570
fragaria_vesca	FvH4_2g30050 FvH4_2g30050 FvH4_2g30050 FvH4_2g30050
malus_domestica	MD08G1137500.v1.1 MD15G1116100.v1.1
prunus_persica	Prupe.1G467500_v2.0.a1
pyrus_communis	pycom08g11640 pycom15g10470
rosa_chinensis	RchiOBHm_Chr6g0312851
rosa_laevigata	RLG00000010292
rosa_multiflora	Rmu_sc0008049.1_g000009
rosa_roxburghii	Rroxscaffold_7G00156430
rosa_rugosa	Rorug06G0400000 Rorug06G0400100 Rorug06G0400200
rosa_samantha	Rh6AG517300 Rh6BG528700 Rh6CG533400 Rh6DG519900
rosa_wichuraiana	Rw6G044940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	353
AccII	CGCG	3 cut(s)	165, 369, 387
AciI	CCGC	9 cut(s)	15, 63, 121, 141, 177, 186, 299, 364, 367
AcoI	YGGCCR	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	111, 130, 249
AgsI	TTSAA	1 cut(s)	194
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	152
AleI	CACNNNNGTG	1 cut(s)	74
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	7 cut(s)	88, 102, 109, 148, 157, 230, 240
ApeKI	GCWGC	2 cut(s)	17, 272
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	5 cut(s)	102, 118, 149, 157, 231
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	4, 259
BccI	CCATC	2 cut(s)	168, 398
BceAI	ACGGC	2 cut(s)	227, 286
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	1 cut(s)	154
BciVI	GTATCC	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	215
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	5 cut(s)	18, 177, 273, 299, 367
BlsI	GCNGC	5 cut(s)	19, 178, 274, 300, 368
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	84
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	5 cut(s)	102, 118, 149, 157, 231
BmiI	GGNNCC	5 cut(s)	81, 151, 158, 355, 415
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	152, 153, 267, 302
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 130, 249
Bse118I	RCCGGY	2 cut(s)	107, 213
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	4 cut(s)	152, 153, 267, 302
BseLI	CCNNNNNNNGG	3 cut(s)	111, 130, 249
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	4, 259
BseYI	CCCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	3 cut(s)	165, 369, 387
Bsh1285I	CGRYCG	2 cut(s)	112, 229
BshFI	GGCC	7 cut(s)	90, 104, 111, 150, 159, 232, 242
BshNI	GGYRCC	1 cut(s)	353
BsiEI	CGRYCG	2 cut(s)	112, 229
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	3 cut(s)	108, 112, 214
BslI	CCNNNNNNNGG	3 cut(s)	111, 130, 249
BsnI	GGCC	7 cut(s)	90, 104, 111, 150, 159, 232, 242
BsoBI	CYCGRG	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	9 cut(s)	15, 63, 121, 141, 177, 186, 299, 364, 367
BspANI	GGCC	7 cut(s)	90, 104, 111, 150, 159, 232, 242
BspFNI	CGCG	3 cut(s)	165, 369, 387
BspLI	GGNNCC	5 cut(s)	81, 151, 158, 355, 415
BspT107I	GGYRCC	1 cut(s)	353
BsrFI	RCCGGY	2 cut(s)	107, 213
BssAI	RCCGGY	2 cut(s)	107, 213
BssECI	CCNNGG	4 cut(s)	152, 153, 267, 302
BssMI	GATC	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	135, 377
BstC8I	GCNNGC	3 cut(s)	67, 174, 389
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	302
BstFNI	CGCG	3 cut(s)	165, 369, 387
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMCI	CGRYCG	2 cut(s)	112, 229
BstMWI	GCNNNNNNNGC	6 cut(s)	135, 156, 185, 214, 272, 377
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	2 cut(s)	339, 380
BstSCI	CCNGG	1 cut(s)	152
BstUI	CGCG	3 cut(s)	165, 369, 387
BstV1I	GCAGC	2 cut(s)	4, 259
BstZI	CGGCCG	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	7 cut(s)	90, 104, 111, 150, 159, 232, 242
BtgI	CCRYGG	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	205
Cac8I	GCNNGC	3 cut(s)	67, 174, 389
CfoI	GCGC	1 cut(s)	371
Cfr10I	RCCGGY	2 cut(s)	107, 213
Cfr13I	GGNCC	5 cut(s)	102, 118, 149, 157, 231
CseI	GACGC	1 cut(s)	154
CviAII	CATG	2 cut(s)	336, 377
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
EciI	GGCGGA	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	286
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	118
Eco52I	CGGCCG	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	286
Eco88I	CYCGRG	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	339, 380
FaiI	YATR	2 cut(s)	337, 378
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FatI	CATG	2 cut(s)	335, 376
Fnu4HI	GCNGC	5 cut(s)	18, 177, 273, 299, 367
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	5 cut(s)	18, 177, 273, 299, 367
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	5 cut(s)	18, 177, 273, 299, 367
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	7 cut(s)	90, 104, 111, 150, 159, 232, 242
HapII	CCGG	3 cut(s)	108, 112, 214
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	339, 380
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HpaII	CCGG	3 cut(s)	108, 112, 214
Hpy188I	TCNGA	3 cut(s)	221, 330, 349
Hpy188III	TCNNGA	3 cut(s)	24, 259, 401
Hpy99I	CGWCG	6 cut(s)	10, 206, 248, 284, 293, 353
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	5 cut(s)	138, 208, 275, 339, 380
HpyF10VI	GCNNNNNNNGC	6 cut(s)	135, 156, 185, 214, 272, 377
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	339, 380
HspAI	GCGC	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	79, 419
LpnPI	CCDG	9 cut(s)	79, 121, 125, 139, 154, 166, 227, 247, 357
Lsp1109I	GCAGC	2 cut(s)	4, 259
LweI	GCATC	1 cut(s)	348
MaeII	ACGT	1 cut(s)	204
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	45, 334
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	2 cut(s)	194, 318
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	6 cut(s)	22, 67, 80, 93, 402, 404
Mph1103I	ATGCAT	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	3 cut(s)	108, 112, 214
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MvnI	CGCG	3 cut(s)	165, 369, 387
MwoI	GCNNNNNNNGC	6 cut(s)	135, 156, 185, 214, 272, 377
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	339, 380
NlaIV	GGNNCC	5 cut(s)	81, 151, 158, 355, 415
NsiI	ATGCAT	1 cut(s)	341
NspI	RCATGY	2 cut(s)	339, 380
OliI	CACNNNNGTG	1 cut(s)	74
PaeR7I	CTCGAG	1 cut(s)	84
PasI	CCCWGGG	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	2 cut(s)	285, 288
PkrI	GCNGC	5 cut(s)	19, 178, 274, 300, 368
Ple19I	CGATCG	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	5 cut(s)	81, 151, 158, 355, 415
PspPI	GGNCC	5 cut(s)	102, 118, 149, 157, 231
PspXI	VCTCGAGB	1 cut(s)	84
PvuI	CGATCG	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	288
SatI	GCNGC	5 cut(s)	18, 177, 273, 299, 367
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	5 cut(s)	102, 118, 149, 157, 231
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	3 cut(s)	135, 207, 288
SfaNI	GCATC	1 cut(s)	348
SfiI	GGCCNNNNNGGCC	1 cut(s)	156
Sfr274I	CTCGAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	118
SlaI	CTCGAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	2 cut(s)	194, 318
SsiI	CCGC	9 cut(s)	15, 63, 121, 141, 177, 186, 299, 364, 367
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	7 cut(s)	25, 85, 246, 279, 288, 311, 402
TasI	AATT	2 cut(s)	194, 318
TauI	GCSGC	3 cut(s)	179, 301, 369
TseI	GCWGC	2 cut(s)	17, 272
VpaK11BI	GGWCC	1 cut(s)	118
XceI	RCATGY	2 cut(s)	339, 380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.