Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008842

Physical Location & Seq

Genomic Coordinates Forward (+)

8676138 .. 8681402

Gene Structure 5265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1120600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGACGAAGAAGAAGAACCCTTTGGTTTTTATGGATGTGTCCGTCGATGGTGATCCTTACGAAAGAATGGTTTTTGAGCTTTTCTCTGATGTTGTTCCCAAGACTGCAGAAAATTTCCGTGCTCTATGCACAGGAGAGCAGGGAATCAGTCCAAAAAGTGGAAAACCACTGCACTACAAAGGGTCCTTTTTCCATCGTATTATAAAAGGTTATATAGCACAGGGTGGCGATTTTGTCAAAAGAGATGGCACAGCTGGTGAAAGCATTTATGGTGAGAAGTTTCCAGATGAGTCACCTGTGCTAAAACACTCTGGACCTGGCCTTCTATCTATGCCTGTTGCTGTTCGTGACTCTTTAGGTTCTCATTTCAACATCACTTTTGCAGCTAATCGTAGTTTTGACAGAAAGCATATAGTTTTTGGGAAGCTTGTACAAGGGCATGAGGTCCTGAAAAAGATTGAAAATGCGGGCGATGAAGATGGGAAACCAACTGTATTAGTTAAAGTGATCAATTGTGGTGATTATAATGAAGACATAAAGAGAGCAAGTAAAGTGAAAGTTGGGAAGGATGCTTCTTCAGAAGCTAATAGTCATGAAGTGAGGCGAAGGGGAAAACAGAAAAAATCTTCAAAAGATAGAAAGAAGAGGAGGAGAAGGAGATATGATTCATCTGAATCCGATAGTTCCTCAGATTCTGAATCTGAATCATCTGAGTCAGATAGTGAGTCTGACTCGGACTTGTCCTCATCATCTTATGCTAGTTCTTCAAGTGATGACAGGCGTAAGAAAAGAAAGAGGTCTTCTAAAAGAGACAAGCATAGACGTGGAAAAAGGCGGGATAAAAGGCGCGACAAAAAGCGAAAGCGTCATGATAAGAAATCTAAGATCAGATCAAAAAGGGCATCGGACGGTCTTACTGATTCTGAGAGTGAAAATAAAAGTGAAAGTAGCTGTGAAGATGATGGCCTGGATGCCAAAAGGAAGGATCAAAAGTCTAAGAAGGACATATCTGAAAAATCTGTTGGAAACCAACCACTTCTTGCAGATGAAGGCGATGCTTCAATCTACTCTAAAAAGATGGAGGAAGCAGAAGTGCTTGTGAAAGACGGTGTATATCCTAAGGAGAATGGAGAGCAGCGGAGCAATGGACTTGCAGGTGCTAAATATGACAAAAGTGCAGATAGACAGCCTGACATAGTTGATGATCACCCAGGGAAATCTAGGTCTTCTTTCCATTCTTGTCACACCTCAGTTATTCTTTATGCTTACCGATTCTTCCAGATCTGGTATTTTATTAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

435

Amino Acids

48.92

Weight (kDa)

9.54

Isoelectric Point (pI)

64.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	10 - 173	2e-37	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29630 FvH4_2g29630 FvH4_2g29630 FvH4_2g29630 FvH4_2g29630
malus_domestica	MD08G1145000.v1.1 MD15G1120600.v1.1
prunus_persica	Prupe.1G473300_v2.0.a1
pyrus_communis	pycom08g12230 pycom15g10880
rosa_chinensis	RchiOBHm_Chr6g0298601
rosa_laevigata	RLG00000011500
rosa_multiflora	Rmu_sc0004500.1_g000014
rosa_roxburghii	Rroxscaffold_7G00169500
rosa_rugosa	Rorug06G0281300.1 Rorug06G0281400 Rorug06G0281500 Rorug06G0281600
rosa_samantha	Rh6AG393000 Rh6BG400700 Rh6CG406600 Rh6DG393300
rosa_wichuraiana	Rw6G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	203, 525
AarI	CACCTGC	1 cut(s)	1145
Acc36I	ACCTGC	1 cut(s)	1145
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccII	CGCG	1 cut(s)	849
AciI	CCGC	3 cut(s)	467, 835, 1138
AclWI	GGATC	2 cut(s)	47, 993
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	561
AdeI	CACNNNGTG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	5 cut(s)	370, 461, 630, 768, 1062
AjiI	CACGTC	1 cut(s)	824
AjnI	CCWGG	3 cut(s)	316, 966, 1210
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 1005, 1037
AluBI	AGCT	6 cut(s)	79, 254, 386, 427, 584, 951
AluI	AGCT	6 cut(s)	79, 254, 386, 427, 584, 951
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	804
AlwI	GGATC	2 cut(s)	47, 993
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	2 cut(s)	319, 964
ApeKI	GCWGC	2 cut(s)	383, 1135
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	849
AspS9I	GGNCC	3 cut(s)	183, 314, 445
AsuHPI	GGTGA	6 cut(s)	62, 269, 284, 285, 530, 1199
AvaII	GGWCC	3 cut(s)	183, 314, 445
AxyI	CCTNAGG	1 cut(s)	1119
BbsI	GAAGAC	3 cut(s)	537, 792, 1218
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	395, 1147
BccI	CCATC	6 cut(s)	41, 201, 239, 473, 956, 1072
BciT130I	CCWGG	3 cut(s)	318, 968, 1212
BclI	TGATCA	2 cut(s)	507, 1204
BcoDI	GTCTC	1 cut(s)	804
BfaI	CTAG	2 cut(s)	759, 1221
BfmI	CTRYAG	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	1145
BglII	AGATCT	1 cut(s)	1281
BisI	GCNGC	2 cut(s)	384, 1136
BlsI	GCNGC	2 cut(s)	385, 1137
Bme1390I	CCNGG	3 cut(s)	318, 968, 1212
Bme18I	GGWCC	3 cut(s)	183, 314, 445
BmgBI	CACGTC	1 cut(s)	824
BmgT120I	GGNCC	3 cut(s)	183, 314, 445
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	3 cut(s)	318, 968, 1212
BmsI	GCATC	4 cut(s)	559, 911, 961, 1045
BpiI	GAAGAC	3 cut(s)	537, 792, 1218
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 716, 748
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	1210, 1211
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse21I	CCTNAGG	1 cut(s)	1119
Bse3DI	GCAATG	1 cut(s)	1150
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	3 cut(s)	318, 968, 1212
BseDI	CCNNGG	2 cut(s)	1210, 1211
BseGI	GGATG	3 cut(s)	40, 574, 976
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	1150
BseMII	CTCAG	4 cut(s)	702, 702, 915, 1263
BseRI	GAGGAG	2 cut(s)	661, 664
BseXI	GCAGC	2 cut(s)	395, 1147
BsgI	GTGCAG	2 cut(s)	155, 1197
Bsh1236I	CGCG	1 cut(s)	849
BshFI	GGCC	2 cut(s)	321, 966
BsiHKAI	GWGCWC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	804
BsnI	GGCC	2 cut(s)	321, 966
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	7 cut(s)	52, 507, 885, 890, 985, 1204, 1281
BspACI	CCGC	3 cut(s)	467, 835, 1138
BspANI	GGCC	2 cut(s)	321, 966
BspCNI	CTCAG	4 cut(s)	701, 703, 916, 1262
BspFNI	CGCG	1 cut(s)	849
BspHI	TCATGA	2 cut(s)	592, 868
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	1145
BspPI	GGATC	2 cut(s)	47, 993
BsrDI	GCAATG	1 cut(s)	1150
BsrGI	TGTACA	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	1210, 1211
BssMI	GATC	7 cut(s)	52, 507, 885, 890, 985, 1204, 1281
Bst2UI	CCWGG	3 cut(s)	318, 968, 1212
Bst4CI	ACNGT	3 cut(s)	493, 911, 1109
Bst6I	CTCTTC	1 cut(s)	638
BstAUI	TGTACA	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	7 cut(s)	688, 711, 882, 924, 996, 1119, 1249
BstF5I	GGATG	3 cut(s)	40, 574, 976
BstFNI	CGCG	1 cut(s)	849
BstHHI	GCGC	1 cut(s)	849
BstKTI	GATC	7 cut(s)	55, 510, 888, 893, 988, 1207, 1284
BstMAI	GTCTC	1 cut(s)	804
BstMBI	GATC	7 cut(s)	52, 507, 885, 890, 985, 1204, 1281
BstNI	CCWGG	3 cut(s)	318, 968, 1212
BstSCI	CCNGG	3 cut(s)	316, 966, 1210
BstSFI	CTRYAG	1 cut(s)	105
BstUI	CGCG	1 cut(s)	849
BstV1I	GCAGC	2 cut(s)	395, 1147
BstV2I	GAAGAC	3 cut(s)	537, 792, 1218
BstX2I	RGATCY	1 cut(s)	1281
BstYI	RGATCY	1 cut(s)	1281
Bsu36I	CCTNAGG	1 cut(s)	1119
BsuRI	GGCC	2 cut(s)	321, 966
BtgZI	GCGATG	2 cut(s)	486, 1068
BtrI	CACGTC	1 cut(s)	824
BtsCI	GGATG	3 cut(s)	40, 574, 976
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	1145
Cac8I	GCNNGC	1 cut(s)	469
CaiI	CAGNNNCTG	1 cut(s)	695
CciI	TCATGA	2 cut(s)	592, 868
CfoI	GCGC	1 cut(s)	849
Cfr13I	GGNCC	3 cut(s)	183, 314, 445
CseI	GACGC	1 cut(s)	854
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	3 cut(s)	440, 593, 869
CviJI	RGCY	9 cut(s)	79, 254, 321, 386, 427, 584, 951, 966, 1189
CviKI_1	RGCY	9 cut(s)	79, 254, 321, 386, 427, 584, 951, 966, 1189
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	7 cut(s)	688, 711, 882, 924, 996, 1119, 1249
DpnI	GATC	7 cut(s)	54, 509, 887, 892, 987, 1206, 1283
DpnII	GATC	7 cut(s)	52, 507, 885, 890, 985, 1204, 1281
DraIII	CACNNNGTG	1 cut(s)	224
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
Eco47I	GGWCC	3 cut(s)	183, 314, 445
Eco57I	CTGAAG	1 cut(s)	561
Eco81I	CCTNAGG	1 cut(s)	1119
EcoO109I	RGGNCCY	2 cut(s)	183, 445
EcoRII	CCWGG	3 cut(s)	316, 966, 1210
FaeI	CATG	3 cut(s)	443, 596, 872
FatI	CATG	3 cut(s)	439, 592, 868
FauI	CCCGC	2 cut(s)	460, 828
FbaI	TGATCA	2 cut(s)	507, 1204
Fnu4HI	GCNGC	2 cut(s)	384, 1136
FokI	GGATG	3 cut(s)	47, 581, 983
Fsp4HI	GCNGC	2 cut(s)	384, 1136
FspBI	CTAG	2 cut(s)	759, 1221
GlaI	GCGC	1 cut(s)	848
GluI	GCNGC	2 cut(s)	384, 1136
HaeIII	GGCC	2 cut(s)	321, 966
HgaI	GACGC	1 cut(s)	854
HhaI	GCGC	1 cut(s)	849
Hin1II	CATG	3 cut(s)	443, 596, 872
Hin6I	GCGC	1 cut(s)	847
HinP1I	GCGC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	425
HphI	GGTGA	6 cut(s)	62, 269, 284, 285, 530, 1199
Hpy188III	TCNNGA	7 cut(s)	284, 312, 347, 448, 593, 869, 1279
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	7 cut(s)	332, 559, 600, 648, 976, 994, 1043
HpyCH4III	ACNGT	3 cut(s)	493, 911, 1109
HpyCH4IV	ACGT	1 cut(s)	823
HpyCH4V	TGCA	7 cut(s)	107, 129, 172, 383, 1043, 1154, 1178
HpyF3I	CTNAG	7 cut(s)	688, 711, 882, 924, 996, 1119, 1249
HpySE526I	ACGT	1 cut(s)	823
Hsp92II	CATG	3 cut(s)	443, 596, 872
HspAI	GCGC	1 cut(s)	847
Ksp22I	TGATCA	2 cut(s)	507, 1204
Kzo9I	GATC	7 cut(s)	52, 507, 885, 890, 985, 1204, 1281
LmnI	GCTCC	1 cut(s)	1140
Lsp1109I	GCAGC	2 cut(s)	395, 1147
LweI	GCATC	4 cut(s)	559, 911, 961, 1045
MaeI	CTAG	2 cut(s)	759, 1221
MaeII	ACGT	1 cut(s)	823
MaeIII	GTNAC	3 cut(s)	291, 347, 1241
MalI	GATC	7 cut(s)	54, 509, 887, 892, 987, 1206, 1283
MboI	GATC	7 cut(s)	52, 507, 885, 890, 985, 1204, 1281
MfeI	CAATTG	1 cut(s)	511
MflI	RGATCY	1 cut(s)	1281
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	2 cut(s)	112, 511
MlyI	GAGTC	5 cut(s)	299, 344, 722, 725, 734
MmeI	TCCRAC	1 cut(s)	1003
MnlI	CCTC	9 cut(s)	436, 594, 639, 642, 697, 754, 789, 1075, 1258
MseI	TTAA	2 cut(s)	501, 1296
MslI	CAYNNNNRTG	1 cut(s)	822
MspA1I	CMGCKG	2 cut(s)	254, 1138
MspR9I	CCNGG	3 cut(s)	318, 968, 1212
MunI	CAATTG	1 cut(s)	511
MvaI	CCWGG	3 cut(s)	318, 968, 1212
MvnI	CGCG	1 cut(s)	849
NdeII	GATC	7 cut(s)	52, 507, 885, 890, 985, 1204, 1281
NlaIII	CATG	3 cut(s)	443, 596, 872
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	3 cut(s)	291, 347, 1241
PagI	TCATGA	2 cut(s)	592, 868
PaqCI	CACCTGC	1 cut(s)	1145
PasI	CCCWGGG	1 cut(s)	1211
PfeI	GAWTC	8 cut(s)	144, 665, 674, 692, 698, 704, 920, 1272
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	385, 1137
PleI	GAGTC	5 cut(s)	298, 344, 721, 725, 733
PpsI	GAGTC	5 cut(s)	298, 344, 721, 725, 733
PpuMI	RGGWCCY	2 cut(s)	183, 445
PsiI	TTATAA	2 cut(s)	203, 525
Psp5II	RGGWCCY	2 cut(s)	183, 445
Psp6I	CCWGG	3 cut(s)	316, 966, 1210
PspGI	CCWGG	3 cut(s)	316, 966, 1210
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	3 cut(s)	183, 314, 445
PspPPI	RGGWCCY	2 cut(s)	183, 445
PstI	CTGCAG	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	1281
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	822
SaqAI	TTAA	2 cut(s)	501, 1296
SatI	GCNGC	2 cut(s)	384, 1136
Sau3AI	GATC	7 cut(s)	52, 507, 885, 890, 985, 1204, 1281
Sau96I	GGNCC	3 cut(s)	183, 314, 445
SchI	GAGTC	5 cut(s)	299, 344, 722, 725, 734
ScrFI	CCNGG	3 cut(s)	318, 968, 1212
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	4 cut(s)	559, 911, 961, 1045
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	3 cut(s)	183, 314, 445
SmiMI	CAYNNNNRTG	1 cut(s)	822
Sse9I	AATT	2 cut(s)	112, 511
SsiI	CCGC	3 cut(s)	467, 835, 1138
SspMI	CTAG	2 cut(s)	759, 1221
StyD4I	CCNGG	3 cut(s)	316, 966, 1210
TaaI	ACNGT	3 cut(s)	493, 911, 1109
TaiI	ACGT	1 cut(s)	826
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	112, 511
TatI	WGTACW	1 cut(s)	430
TfiI	GAWTC	8 cut(s)	144, 665, 674, 692, 698, 704, 920, 1272
Tru1I	TTAA	2 cut(s)	501, 1296
Tru9I	TTAA	2 cut(s)	501, 1296
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	3 cut(s)	291, 347, 1241
TseI	GCWGC	2 cut(s)	383, 1135
Tsp45I	GTSAC	3 cut(s)	291, 347, 1241
TspDTI	ATGAA	5 cut(s)	489, 543, 609, 657, 1062
TspGWI	ACGGA	2 cut(s)	31, 107
TspRI	CASTG	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	158
VpaK11BI	GGWCC	3 cut(s)	183, 314, 445
XapI	RAATTY	1 cut(s)	112
XspI	CTAG	2 cut(s)	759, 1221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.