Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008842

Physical Location & Seq

Genomic Coordinates Forward (+)

42903463 .. 42909312

Gene Structure 5850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0281500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2742 bp

ATGATGATGATGAAGCCTCAGCTGCAAAAACCACCCTCCTCCTCTGCTAGATCTAGTCCTCTCTTACCACTAAAACCTGGCAGCTCCGCCATTCTGAGCAGCCCTTCCTTCGTCAACATCCTTCCTGCACACGGCCACACAAAGCACCACTTGAGCAAAAAATATAATCGCATCCGAGCCTCCGGTGAAGTAAAGGCAACGACGGCAACCACCACAGGGTTGGATCAAAAGGATACTGCAGTCACAGTAAAGGCAGTGGTTACGGTGCAAGAAACAGCGGCAAACATCCTCTCCACCCTTAGCTTGACTGCACCGCTCGACGCCCTCACCGATTTCGCTGGCAAAACCTTTCTTCTCGAGCTTGTCAGCGTTCAACTTGACCACAAGACTGGGTTGGGGAAAGAAACAATAAAGGGGTATGCACACAAAGTGAACCAAAAAGAGACGATCGTCACATACGAGAGTGTGCTGACGATCCCAGCGGGTTTCGGGGATATCGGAGCGGTTCAGGTTGAGAATGAGCACCACGAGGAGGCTTACATCAAGAGTATCGAGATCTCCTGCTTCCCAAATGTCACCTCTGTTAGTGTTCCATGTAATTCATGGACTCATTCCAAGTATGACAATAAGCAAAAGAGAATCTTTTTCACCAACAAGTCTTACTTACCATCAGAGACACCAAGTGGGATCAAGAGGCTAAGAGAAGAGGAGCTGCAACTTCTGCGAGGAAATGGCGAGGGTGAAAGGAAAGCATCTGAAAGGATTTACGATTATGATACATACAATGATCTTGGAGACCCGGATAGCAAAGACGAGTTGGGTAGGCCTGTCCTTGGTGGAAAAGACCACCCGTACCCTAGGCGCTGCAGAACTGGACGACCACGCACTAAAAAGGATCCATTATCCGAGGAAAGAAGCAGTAGCGTGTATGTGCCAAGAGATGAAGCGTTTTCAGAGTTGAAACAGCTCACATTCTCTACAAAGACCCTGAAATCTGTGCTGCACGCATTGCTTCCTCAACTTGAGATAACACTTGTTGATCCAGAGCTAGGATTTCCCGACTTCACAGCCATAGATTCATTGTTCAATGAAGGAGTCACATTGCCTAAGCCAACAGCTAGTGGCTTTTTTCAGTCAATCATCCCAAGGCTAGTCAAGGCAATTAGCGATGGACAAGATGATCTCTTGCTCTTTGAGACCCCTGAAATACTTGATCGTGATAAATTTTCTTGGTTCGAAGATGAAGAATTTTCTAGGCAAACTCTAGCTGGTCTTAATCCATATAGCATAGAGCTAGTTACGGAATGGCCATTGAAAAGTAAACTTGACCCCGAGATTTATGGCCCAGCTGAATCATTGATCACCACAGAACTGGTGGAGAAGGAAATCAGATGCTTTATGACTGTCGATGAGGCCTTAAAAAAAAAGAAGCTCTTTATTTTGGATTATCATGATCTGCTCATGCCTTATGTGAACAAAGTGAGAGAGGTTGAAGGAACCACACTGTATGGTTCTCGGACACTTTTCTTCCTCACTGAGAATGGCACACTGAGGCCTGTTGCCATTGAACTCACTCGACCACCCATTGGTGACAAGCCCCAATGGAAGGAAGTGTTTACCCCAACATGGGATGCCACTGGTTGCTGGCTTTGGAGGCTTGCTAAAGCCCATGTTTGTGCTCATGATTCGGGCTATCATCAACTTGTCATCCACTGGCTGAGGACTCATTGTTGTACAGAACCATACATAATTGCAGCTAATCGACAACTAAGTGCAATGCATCCCATCTATAGGCTTCTACATCCTCATTTCCGTTATACAATGGAAATCAATGCTCTGGCTCGAGAAAGCCTCATTAATGCAGGTGGAGCCATTGAGACCTGCTTCTCACCAGCAAAGTACTCAAATGAGCTCAGTTCTGCTGCTTACAACCAGCTTTGGCGCTTTGACATGGAAGCTTTGCCTGCAGATCTAATCAAAAGGGGAATGGCAGTTGAAGATCCTACAGCTGAGCATGGTGTGAAGCTAACAATTGAAGACTACCCATTTGCAAATGATGGTCTCATTCTGTGGGATGCCATTAAGGAATGGGTGGGTGACTATGTGAACCACTATTATCCAGACCCAACTCTTGTTGAATCTGATAACGAGCTTCAAGCTTGGTGGACAGAAGTTAGAACGAAAGGCCATGCAGACAAAAAAGATGAACCATGGTGGCCTGTTTTGAAAACCCCAGAAGATCTCATTCATACTTTGACAACTATAATTTGGGTTACAGTTGGACATCATGCTGCAGTGAACTTTGGTCAGTACATGTATGCCGGATACTTCCCGAACCGGCCTACAATAGCTCGAAGCAACATGCCAACCGAAGATCCAAACGACGATCTTTTCAAGGTATTTTTGAAGAAACCAGAAGCTGCATTGCTGAGGTGCTTCCCCTCACAGATTCAAGCAACAAAAGTGATGGCTCTCTTGGATGTATTATCGAACCATTCACCCGATGAGGAGTACATTGGTGGGAATGTGGAGTCATCTTGGGCTGAAAACCCGGTGATAAAGGCAGCTTTCGAGCGGTTCAATGGCAATTTGAAGAAGCTAGAAGGAATTATTGATGAGAGGAACACCAATATGAAGCTGAAAAACAGAGTCGGAGCAGGGGTTGTTCCATATGAGCTTTTGAAGCCATTCTCAGAATCAGGGGTCACAGGAAAGGGAGTTCCCAACAGCATCTCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

913

Amino Acids

102.75

Weight (kDa)

5.89

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	146 - 216	7.9e-07	PLAT/LH2 domain
Lipoxygenase	PF00305	229 - 896	0.0	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29630 FvH4_2g29630 FvH4_2g29630 FvH4_2g29630 FvH4_2g29630
malus_domestica	MD08G1145000.v1.1 MD15G1120600.v1.1
prunus_persica	Prupe.1G473300_v2.0.a1
pyrus_communis	pycom08g12230 pycom15g10880
rosa_chinensis	RchiOBHm_Chr6g0298601
rosa_laevigata	RLG00000011500
rosa_multiflora	Rmu_sc0004500.1_g000014
rosa_roxburghii	Rroxscaffold_7G00169500
rosa_rugosa	Rorug06G0281300.1 Rorug06G0281400 Rorug06G0281500 Rorug06G0281600
rosa_samantha	Rh6AG393000 Rh6BG400700 Rh6CG406600 Rh6DG393300
rosa_wichuraiana	Rw6G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1853
Acc36I	ACCTGC	2 cut(s)	1853, 1889
AccB7I	CCANNNNNTGG	1 cut(s)	1586
AccBSI	CCGCTC	3 cut(s)	316, 503, 2575
AciI	CCGC	6 cut(s)	87, 278, 314, 482, 503, 2575
AclWI	GGATC	8 cut(s)	231, 469, 695, 890, 903, 1034, 1994, 2369
AcoI	YGGCCR	2 cut(s)	133, 1307
AcsI	RAATTY	2 cut(s)	1223, 1247
AcyI	GRCGYC	1 cut(s)	321
AdeI	CACNNNGTG	2 cut(s)	430, 683
AfaI	GTAC	5 cut(s)	854, 1735, 1901, 2312, 2513
AflIII	ACRYGT	1 cut(s)	2313
AjnI	CCWGG	1 cut(s)	76
AloI	GAACNNNNNNTCC	2 cut(s)	2703, 2735
Alw21I	GWGCWC	3 cut(s)	525, 1681, 1914
Alw26I	GTCTC	6 cut(s)	437, 668, 789, 1190, 1871, 2066
AlwI	GGATC	8 cut(s)	231, 469, 695, 890, 903, 1034, 1994, 2369
AlwNI	CAGNNNCTG	1 cut(s)	2420
Ama87I	CYCGRG	3 cut(s)	356, 1331, 1842
AoxI	GGCC	9 cut(s)	133, 824, 1307, 1342, 1413, 1553, 2185, 2216, 2339
ApoI	RAATTY	2 cut(s)	1223, 1247
ArsI	GACNNNNNNTTYG	2 cut(s)	2030, 2062
AseI	ATTAAT	1 cut(s)	1857
Asp700I	GAANNNNTTC	1 cut(s)	2687
AspA2I	CCTAGG	1 cut(s)	857
AspLEI	GCGC	2 cut(s)	864, 1944
AspS9I	GGNCC	1 cut(s)	1343
AsuC2I	CCSGG	2 cut(s)	800, 2552
AsuII	TTCGAA	1 cut(s)	1236
AvaI	CYCGRG	3 cut(s)	356, 1331, 1842
AvrII	CCTAGG	1 cut(s)	857
BaeI	ACNNNNGTAYC	2 cut(s)	225, 258
BalI	TGGCCA	1 cut(s)	1309
BamHI	GGATCC	1 cut(s)	895
BanII	GRGCYC	1 cut(s)	1914
BauI	CACGAG	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	2043
Bbv12I	GWGCWC	3 cut(s)	525, 1681, 1914
BbvCI	CCTCAGC	3 cut(s)	18, 1718, 2429
BccI	CCATC	5 cut(s)	676, 1163, 1793, 2051, 2461
BceAI	ACGGC	2 cut(s)	148, 219
BciT130I	CCWGG	1 cut(s)	78
BciVI	GTATCC	2 cut(s)	226, 2318
BclI	TGATCA	1 cut(s)	1359
BcnI	CCSGG	2 cut(s)	800, 2552
BcoDI	GTCTC	6 cut(s)	437, 668, 789, 1190, 1871, 2066
BfmI	CTRYAG	6 cut(s)	237, 865, 1789, 1965, 2004, 2292
BfoI	RGCGCY	2 cut(s)	865, 1945
BfuAI	ACCTGC	2 cut(s)	1853, 1889
BfuI	GTATCC	2 cut(s)	226, 2318
BglII	AGATCT	4 cut(s)	50, 555, 1969, 2239
BlnI	CCTAGG	1 cut(s)	857
BlpI	GCTNAGC	1 cut(s)	2010
BmcAI	AGTACT	1 cut(s)	1901
Bme1390I	CCNGG	3 cut(s)	78, 800, 2552
BmeT110I	CYCGRG	3 cut(s)	356, 1331, 1842
BmgT120I	GGNCC	1 cut(s)	1343
BmiI	GGNNCC	3 cut(s)	897, 1498, 1870
BmrFI	CCNGG	3 cut(s)	78, 800, 2552
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	6 cut(s)	180, 761, 1382, 1621, 1789, 2065
BmuI	ACTGGG	1 cut(s)	399
BoxI	GACNNNNGTC	1 cut(s)	449
BpiI	GAAGAC	1 cut(s)	2043
BplI	GAGNNNNNCTC	2 cut(s)	1836, 1868
Bpu10I	CCTNAGC	5 cut(s)	18, 299, 1107, 1718, 2429
Bpu1102I	GCTNAGC	1 cut(s)	2010
Bpu14I	TTCGAA	1 cut(s)	1236
BpuEI	CTTGAG	2 cut(s)	172, 1043
BpuMI	CCSGG	2 cut(s)	800, 2552
BsaHI	GRCGYC	1 cut(s)	321
BsaI	GGTCTC	4 cut(s)	789, 1190, 1871, 2066
BsaJI	CCNNGG	5 cut(s)	832, 857, 906, 1145, 2210
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	5 cut(s)	275, 305, 2646, 2676, 2717
Bse118I	RCCGGY	1 cut(s)	2337
Bse1I	ACTGG	5 cut(s)	394, 877, 1377, 1642, 1718
Bse3DI	GCAATG	4 cut(s)	1007, 1100, 1782, 2423
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	5 cut(s)	832, 857, 906, 1145, 2210
BseMI	GCAATG	4 cut(s)	1007, 1100, 1782, 2423
BseMII	CTCAG	9 cut(s)	32, 86, 1527, 1541, 1709, 1927, 2001, 2420, 2706
BseNI	ACTGG	5 cut(s)	394, 877, 1377, 1642, 1718
BseRI	GAGGAG	5 cut(s)	28, 31, 545, 722, 2522
BseYI	CCCAGC	2 cut(s)	478, 1345
BsgI	GTGCAG	3 cut(s)	111, 294, 986
Bsh1285I	CGRYCG	1 cut(s)	450
BshFI	GGCC	9 cut(s)	135, 826, 1309, 1344, 1415, 1555, 2187, 2218, 2341
BsiEI	CGRYCG	1 cut(s)	450
BsiHKAI	GWGCWC	3 cut(s)	525, 1681, 1914
BsiHKCI	CYCGRG	3 cut(s)	356, 1331, 1842
BsiSI	CCGG	5 cut(s)	183, 800, 2322, 2338, 2552
BsmAI	GTCTC	6 cut(s)	437, 668, 789, 1190, 1871, 2066
BsmBI	CGTCTC	1 cut(s)	437
BsnI	GGCC	9 cut(s)	135, 826, 1309, 1344, 1415, 1555, 2187, 2218, 2341
Bso31I	GGTCTC	4 cut(s)	789, 1190, 1871, 2066
BsoBI	CYCGRG	3 cut(s)	356, 1331, 1842
Bsp119I	TTCGAA	1 cut(s)	1236
Bsp1286I	GDGCHC	3 cut(s)	525, 1681, 1914
Bsp1407I	TGTACA	1 cut(s)	1733
Bsp1720I	GCTNAGC	1 cut(s)	2010
Bsp19I	CCATGG	1 cut(s)	2210
BspACI	CCGC	6 cut(s)	87, 278, 314, 482, 503, 2575
BspANI	GGCC	9 cut(s)	135, 826, 1309, 1344, 1415, 1555, 2187, 2218, 2341
BspCNI	CTCAG	9 cut(s)	31, 87, 1528, 1542, 1710, 1926, 2002, 2421, 2705
BspHI	TCATGA	2 cut(s)	1450, 1681
BspLI	GGNNCC	3 cut(s)	897, 1498, 1870
BspMAI	CTGCAG	4 cut(s)	241, 869, 1969, 2296
BspMI	ACCTGC	2 cut(s)	1853, 1889
BspPI	GGATC	8 cut(s)	231, 469, 695, 890, 903, 1034, 1994, 2369
BspT104I	TTCGAA	1 cut(s)	1236
BspTNI	GGTCTC	4 cut(s)	789, 1190, 1871, 2066
BsrBI	CCGCTC	3 cut(s)	316, 503, 2575
BsrDI	GCAATG	4 cut(s)	1007, 1100, 1782, 2423
BsrFI	RCCGGY	1 cut(s)	2337
BsrGI	TGTACA	1 cut(s)	1733
BsrI	ACTGG	5 cut(s)	394, 877, 1377, 1642, 1718
BssAI	RCCGGY	1 cut(s)	2337
BssECI	CCNNGG	5 cut(s)	832, 857, 906, 1145, 2210
BssNI	GRCGYC	1 cut(s)	321
BssSI	CACGAG	1 cut(s)	527
BssT1I	CCWWGG	4 cut(s)	832, 857, 1145, 2210
Bst2BI	CACGAG	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	5 cut(s)	247, 265, 1405, 1506, 2278
Bst6I	CTCTTC	1 cut(s)	699
BstACI	GRCGYC	1 cut(s)	321
BstAPI	GCANNNNNTGC	2 cut(s)	721, 1009
BstAUI	TGTACA	1 cut(s)	1733
BstBI	TTCGAA	1 cut(s)	1236
BstC8I	GCNNGC	5 cut(s)	340, 1005, 1646, 1659, 1965
BstDSI	CCRYGG	1 cut(s)	2210
BstH2I	RGCGCY	2 cut(s)	865, 1945
BstHHI	GCGC	2 cut(s)	864, 1944
BstMAI	GTCTC	6 cut(s)	437, 668, 789, 1190, 1871, 2066
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 203, 721, 1009, 1654, 1868, 1964, 2683
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	2 cut(s)	2317, 2365
BstPAI	GACNNNNGTC	1 cut(s)	449
BstSCI	CCNGG	3 cut(s)	76, 798, 2550
BstSFI	CTRYAG	6 cut(s)	237, 865, 1789, 1965, 2004, 2292
BstV2I	GAAGAC	1 cut(s)	2043
BstX2I	RGATCY	7 cut(s)	50, 555, 895, 1969, 1999, 2239, 2374
BstXI	CCANNNNNNTGG	3 cut(s)	220, 389, 1372
BstYI	RGATCY	7 cut(s)	50, 555, 895, 1969, 1999, 2239, 2374
BsuI	GTATCC	2 cut(s)	226, 2318
BsuRI	GGCC	9 cut(s)	135, 826, 1309, 1344, 1415, 1555, 2187, 2218, 2341
BtgI	CCRYGG	1 cut(s)	2210
BtgZI	GCGATG	1 cut(s)	1182
BtsI	GCAGTG	2 cut(s)	261, 2301
BtsIMutI	CAGTG	7 cut(s)	261, 1502, 1533, 1547, 1635, 1711, 2301
BveI	ACCTGC	2 cut(s)	1853, 1889
Cac8I	GCNNGC	5 cut(s)	340, 1005, 1646, 1659, 1965
CaiI	CAGNNNCTG	1 cut(s)	2420
CciI	TCATGA	2 cut(s)	1450, 1681
CfoI	GCGC	2 cut(s)	864, 1944
Cfr10I	RCCGGY	1 cut(s)	2337
Cfr13I	GGNCC	1 cut(s)	1343
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	5 cut(s)	853, 1734, 1900, 2311, 2512
CspCI	CAANNNNNGTGG	2 cut(s)	2144, 2179
CviQI	GTAC	5 cut(s)	853, 1734, 1900, 2311, 2512
DraIII	CACNNNGTG	2 cut(s)	430, 683
EaeI	YGGCCR	2 cut(s)	133, 1307
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
EciI	GGCGGA	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	1912
Eco130I	CCWWGG	4 cut(s)	832, 857, 1145, 2210
Eco147I	AGGCCT	3 cut(s)	826, 1415, 1555
Eco24I	GRGCYC	1 cut(s)	1914
Eco31I	GGTCTC	4 cut(s)	789, 1190, 1871, 2066
Eco32I	GATATC	1 cut(s)	496
Eco53kI	GAGCTC	1 cut(s)	1912
Eco88I	CYCGRG	3 cut(s)	356, 1331, 1842
EcoICRI	GAGCTC	1 cut(s)	1912
EcoRII	CCWGG	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	4 cut(s)	832, 857, 1145, 2210
EcoT22I	ATGCAT	1 cut(s)	1782
EcoT38I	GRGCYC	1 cut(s)	1914
ErhI	CCWWGG	4 cut(s)	832, 857, 1145, 2210
Esp3I	CGTCTC	1 cut(s)	437
FalI	AAGNNNNNCTT	8 cut(s)	134, 166, 626, 658, 647, 679, 1418, 1450
FauI	CCCGC	1 cut(s)	475
FauNDI	CATATG	1 cut(s)	2671
FbaI	TGATCA	1 cut(s)	1359
FriOI	GRGCYC	1 cut(s)	1914
GlaI	GCGC	2 cut(s)	863, 1943
GsaI	CCCAGC	2 cut(s)	482, 1349
HaeII	RGCGCY	2 cut(s)	865, 1945
HaeIII	GGCC	9 cut(s)	135, 826, 1309, 1344, 1415, 1555, 2187, 2218, 2341
HapII	CCGG	5 cut(s)	183, 800, 2322, 2338, 2552
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	2 cut(s)	864, 1944
Hin1I	GRCGYC	1 cut(s)	321
Hin6I	GCGC	2 cut(s)	862, 1942
HinP1I	GCGC	2 cut(s)	862, 1942
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	2 cut(s)	1956, 2157
HpaII	CCGG	5 cut(s)	183, 800, 2322, 2338, 2552
Hpy166II	GTNNAC	8 cut(s)	115, 433, 1322, 1474, 1617, 2107, 2166, 2299
Hpy8I	GTNNAC	8 cut(s)	115, 433, 1322, 1474, 1617, 2107, 2166, 2299
Hpy99I	CGWCG	3 cut(s)	205, 323, 2387
HpyAV	CCTTC	8 cut(s)	114, 118, 131, 1085, 1375, 1487, 1600, 2597
HpyCH4III	ACNGT	5 cut(s)	247, 265, 1405, 1506, 2278
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 203, 721, 1009, 1654, 1868, 1964, 2683
Hsp92I	GRCGYC	1 cut(s)	321
HspAI	GCGC	2 cut(s)	862, 1942
Ksp22I	TGATCA	1 cut(s)	1359
LmnI	GCTCC	5 cut(s)	89, 500, 709, 1868, 2654
LweI	GCATC	6 cut(s)	180, 761, 1382, 1621, 1789, 2065
MbiI	CCGCTC	3 cut(s)	316, 503, 2575
MfeI	CAATTG	1 cut(s)	2031
MflI	RGATCY	7 cut(s)	50, 555, 895, 1969, 1999, 2239, 2374
MhlI	GDGCHC	3 cut(s)	525, 1681, 1914
MlsI	TGGCCA	1 cut(s)	1309
MluCI	AATT	9 cut(s)	598, 1161, 1223, 1247, 1749, 2031, 2265, 2587, 2607
MluNI	TGGCCA	1 cut(s)	1309
MlyI	GAGTC	5 cut(s)	601, 1104, 1717, 2540, 2658
MmeI	TCCRAC	3 cut(s)	201, 2260, 2632
Mox20I	TGGCCA	1 cut(s)	1309
Mph1103I	ATGCAT	1 cut(s)	1782
MroXI	GAANNNNTTC	1 cut(s)	2687
MscI	TGGCCA	1 cut(s)	1309
MseI	TTAA	4 cut(s)	1275, 1418, 1857, 2082
MslI	CAYNNNNRTG	2 cut(s)	1674, 2630
Msp20I	TGGCCA	1 cut(s)	1309
MspA1I	CMGCKG	5 cut(s)	22, 278, 482, 1349, 2009
MspI	CCGG	5 cut(s)	183, 800, 2322, 2338, 2552
MspR9I	CCNGG	3 cut(s)	78, 800, 2552
MunI	CAATTG	1 cut(s)	2031
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	8 cut(s)	22, 203, 721, 1009, 1654, 1868, 1964, 2683
NciI	CCSGG	2 cut(s)	800, 2552
NcoI	CCATGG	1 cut(s)	2210
NdeI	CATATG	1 cut(s)	2671
NlaIV	GGNNCC	3 cut(s)	897, 1498, 1870
NmuCI	GTSAC	7 cut(s)	241, 451, 574, 1096, 1589, 2096, 2704
NsiI	ATGCAT	1 cut(s)	1782
NspI	RCATGY	2 cut(s)	2317, 2365
NspV	TTCGAA	1 cut(s)	1236
PaeR7I	CTCGAG	2 cut(s)	356, 1842
PagI	TCATGA	2 cut(s)	1450, 1681
PaqCI	CACCTGC	1 cut(s)	1853
PceI	AGGCCT	3 cut(s)	826, 1415, 1555
PciI	ACATGT	1 cut(s)	2313
PcsI	WCGNNNNNNNCGW	2 cut(s)	327, 456
PdmI	GAANNNNTTC	1 cut(s)	2687
PfeI	GAWTC	7 cut(s)	639, 1076, 1352, 1685, 2138, 2449, 2696
PflMI	CCANNNNNTGG	1 cut(s)	1586
Ple19I	CGATCG	1 cut(s)	450
PleI	GAGTC	5 cut(s)	601, 1103, 1717, 2539, 2657
PpsI	GAGTC	5 cut(s)	601, 1103, 1717, 2539, 2657
PscI	ACATGT	1 cut(s)	2313
PshAI	GACNNNNGTC	1 cut(s)	449
PshBI	ATTAAT	1 cut(s)	1857
Psp124BI	GAGCTC	1 cut(s)	1914
Psp6I	CCWGG	1 cut(s)	76
PspFI	CCCAGC	2 cut(s)	478, 1345
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	3 cut(s)	897, 1498, 1870
PspPI	GGNCC	1 cut(s)	1343
PstI	CTGCAG	4 cut(s)	241, 869, 1969, 2296
PstNI	CAGNNNCTG	1 cut(s)	2420
PsuI	RGATCY	7 cut(s)	50, 555, 895, 1969, 1999, 2239, 2374
PvuI	CGATCG	1 cut(s)	450
PvuII	CAGCTG	3 cut(s)	22, 1349, 2009
RsaI	GTAC	5 cut(s)	854, 1735, 1901, 2312, 2513
RsaNI	GTAC	5 cut(s)	853, 1734, 1900, 2311, 2512
RseI	CAYNNNNRTG	2 cut(s)	1674, 2630
SacI	GAGCTC	1 cut(s)	1914
SaqAI	TTAA	4 cut(s)	1275, 1418, 1857, 2082
Sau96I	GGNCC	1 cut(s)	1343
ScaI	AGTACT	1 cut(s)	1901
SchI	GAGTC	5 cut(s)	601, 1104, 1717, 2540, 2658
ScrFI	CCNGG	3 cut(s)	78, 800, 2552
SduI	GDGCHC	3 cut(s)	525, 1681, 1914
SfaNI	GCATC	6 cut(s)	180, 761, 1382, 1621, 1789, 2065
SfcI	CTRYAG	6 cut(s)	237, 865, 1789, 1965, 2004, 2292
Sfr274I	CTCGAG	2 cut(s)	356, 1842
SfuI	TTCGAA	1 cut(s)	1236
SlaI	CTCGAG	2 cut(s)	356, 1842
SmiMI	CAYNNNNRTG	2 cut(s)	1674, 2630
SmlI	CTYRAG	4 cut(s)	151, 356, 1022, 1842
SmoI	CTYRAG	4 cut(s)	151, 356, 1022, 1842
Sse9I	AATT	9 cut(s)	598, 1161, 1223, 1247, 1749, 2031, 2265, 2587, 2607
SseBI	AGGCCT	3 cut(s)	826, 1415, 1555
SsiI	CCGC	6 cut(s)	87, 278, 314, 482, 503, 2575
SstI	GAGCTC	1 cut(s)	1914
StuI	AGGCCT	3 cut(s)	826, 1415, 1555
StyD4I	CCNGG	3 cut(s)	76, 798, 2550
StyI	CCWWGG	4 cut(s)	832, 857, 1145, 2210
TaaI	ACNGT	5 cut(s)	247, 265, 1405, 1506, 2278
TasI	AATT	9 cut(s)	598, 1161, 1223, 1247, 1749, 2031, 2265, 2587, 2607
TatI	WGTACW	4 cut(s)	1733, 1899, 2310, 2511
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	7 cut(s)	639, 1076, 1352, 1685, 2138, 2449, 2696
Tru1I	TTAA	4 cut(s)	1275, 1418, 1857, 2082
Tru9I	TTAA	4 cut(s)	1275, 1418, 1857, 2082
TscAI	CASTG	7 cut(s)	261, 1509, 1540, 1554, 1642, 1718, 2301
TseFI	GTSAC	7 cut(s)	241, 451, 574, 1096, 1589, 2096, 2704
Tsp45I	GTSAC	7 cut(s)	241, 451, 574, 1096, 1589, 2096, 2704
TspDTI	ATGAA	9 cut(s)	26, 591, 957, 1068, 1104, 1257, 2220, 2237, 2648
TspGWI	ACGGA	2 cut(s)	1316, 1802
TspRI	CASTG	7 cut(s)	261, 1509, 1540, 1554, 1642, 1718, 2301
Van91I	CCANNNNNTGG	1 cut(s)	1586
VspI	ATTAAT	1 cut(s)	1857
XapI	RAATTY	2 cut(s)	1223, 1247
XceI	RCATGY	2 cut(s)	2317, 2365
XcmI	CCANNNNNNNNNTGG	3 cut(s)	217, 600, 1372
XhoI	CTCGAG	2 cut(s)	356, 1842
XmaJI	CCTAGG	1 cut(s)	857
XmnI	GAANNNNTTC	1 cut(s)	2687
ZrmI	AGTACT	1 cut(s)	1901
Zsp2I	ATGCAT	1 cut(s)	1782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.