Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008842

Physical Location & Seq

Genomic Coordinates Forward (+)

7309999 .. 7314262

Gene Structure 4264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10880.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTCGAAGAAGAAGAACCCCTTTGTTTTCATGGATGTGTCCGTCGATGGTGATCCTTATGAAAGAATGGTTTTTGAGCTTTTCTCTGATGTTGTTCCCAAGACCGCAGAAAATTTCCATGCTCTATGCACAGGAGAGCAGGGAATCAGTCCAAAAAGTGGAAAACCACTGCACTACAAAGGGTCCTTTTTCCATCGTATTATAAAAGGTTATATAGCACAGGGTGGCGATTTTGTCAAAAGAGATGGCACAGCTGGTGAAAGCATTTATGGGGAGAAGTTTCCAGATGAGTCACCTGTGCTAAAACACTCTGGACCTGGCCTTCTATCTATGCCTGTTGCTGTTCGTGACTCTTTAGGTTCTCATTTCAACATCACTTTTGCAGCTAATCGTAGTCTTGACAGAAAGCATATAGTTTTTGGGAAGCTTGTACAAGGACATGAGGTCCTCAAAAAGATTGAAAATGCGGGCGATGAAGATGGGAAACCAACTGTATTAGTTAAAGTGATCAATTGTGGCGATTATAATGAAGACATAAAGAGAGCAAGTAAAGTGAAAGTTGGGAAGGATGCTTCTTCAGAAGCTAATAGTCATGAAGTGAGGCGAAGGGGAAAACACAAAAAATCTTCAAAAGATAGAAGGAAGAGGAGGAGAAGGAGATATGATTCATCTGAAACAGACAGTTCCTCAGATTCCGAATCTGAATCATCCGAGTCAGATAGTGAGTCTGACTCGGACTTGTCCTCATCATCTTATGCTAGTTCTTCAAGTGATGACAGGCGTAAGAAAAGAAAGAGGTCTTCTAAAAGAGACAAGCAGAGACGTGGAAAAAGGCGGGATAAAAGGCGCGACAAAAAGCGAAGGCGTCGTGATAAGAAATCTAAGATCAGATCAAAAAGGGCATCGGATGGTCTTACTGATTCTGAGAGTGAAAATAAAAGTGAAAGTAGCTGTGAAGATGATGGCCTGGATGCCCAAAGGAAGGATCAAAAGTCTAAGAAGGACATCTCTGAAAAATCTGTTGTGTTGGAAACCAACCACTTCTTGCAGACGAAGGTGATGCTTCAATCTACTCTAAAAAGATGGAGGAAGCAGAAGTGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

369

Amino Acids

41.8

Weight (kDa)

9.85

Isoelectric Point (pI)

78.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29630 FvH4_2g29630 FvH4_2g29630 FvH4_2g29630 FvH4_2g29630
malus_domestica	MD08G1145000.v1.1 MD15G1120600.v1.1
prunus_persica	Prupe.1G473300_v2.0.a1
pyrus_communis	pycom08g12230 pycom15g10880
rosa_chinensis	RchiOBHm_Chr6g0298601
rosa_laevigata	RLG00000011500
rosa_multiflora	Rmu_sc0004500.1_g000014
rosa_roxburghii	Rroxscaffold_7G00169500
rosa_rugosa	Rorug06G0281300.1 Rorug06G0281400 Rorug06G0281500 Rorug06G0281600
rosa_samantha	Rh6AG393000 Rh6BG400700 Rh6CG406600 Rh6DG393300
rosa_wichuraiana	Rw6G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	203, 525
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccII	CGCG	1 cut(s)	849
AciI	CCGC	3 cut(s)	105, 467, 835
AclWI	GGATC	2 cut(s)	47, 993
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	561
AcyI	GRCGYC	1 cut(s)	865
AdeI	CACNNNGTG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	2 cut(s)	158, 982
AgsI	TTSAA	5 cut(s)	370, 461, 630, 768, 1067
AhdI	GACNNNNNGTC	1 cut(s)	443
AjiI	CACGTC	1 cut(s)	824
AjnI	CCWGG	2 cut(s)	316, 966
AluBI	AGCT	6 cut(s)	79, 254, 386, 427, 584, 951
AluI	AGCT	6 cut(s)	79, 254, 386, 427, 584, 951
Alw26I	GTCTC	2 cut(s)	804, 814
AlwI	GGATC	2 cut(s)	47, 993
AoxI	GGCC	2 cut(s)	319, 964
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	849
AspS9I	GGNCC	3 cut(s)	183, 314, 445
AsuHPI	GGTGA	4 cut(s)	62, 269, 285, 1069
AvaII	GGWCC	3 cut(s)	183, 314, 445
BbsI	GAAGAC	2 cut(s)	537, 792
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	7 cut(s)	41, 201, 239, 473, 902, 956, 1077
BcgI	CGANNNNNNTGC	2 cut(s)	1042, 1076
BciT130I	CCWGG	2 cut(s)	318, 968
BclI	TGATCA	1 cut(s)	507
BcoDI	GTCTC	2 cut(s)	804, 814
BfaI	CTAG	1 cut(s)	759
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	2 cut(s)	318, 968
Bme18I	GGWCC	3 cut(s)	183, 314, 445
BmeRI	GACNNNNNGTC	1 cut(s)	443
BmgBI	CACGTC	1 cut(s)	824
BmgT120I	GGNCC	3 cut(s)	183, 314, 445
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	2 cut(s)	318, 968
BmsI	GCATC	4 cut(s)	559, 911, 961, 1050
BpiI	GAAGAC	2 cut(s)	537, 792
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 716, 748
BsaBI	GATNNNNATC	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	865
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 982
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	318, 968
BseGI	GGATG	5 cut(s)	40, 574, 707, 913, 976
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	158, 982
BseMII	CTCAG	2 cut(s)	702, 915
BseRI	GAGGAG	2 cut(s)	661, 664
BseXI	GCAGC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	849
BshFI	GGCC	2 cut(s)	321, 966
BslI	CCNNNNNNNGG	2 cut(s)	158, 982
BsmAI	GTCTC	2 cut(s)	804, 814
BsmBI	CGTCTC	1 cut(s)	814
BsnI	GGCC	2 cut(s)	321, 966
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	5 cut(s)	52, 507, 885, 890, 985
BspACI	CCGC	3 cut(s)	105, 467, 835
BspANI	GGCC	2 cut(s)	321, 966
BspCNI	CTCAG	2 cut(s)	701, 916
BspFNI	CGCG	1 cut(s)	849
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	2 cut(s)	47, 993
BsrGI	TGTACA	1 cut(s)	430
BssMI	GATC	5 cut(s)	52, 507, 885, 890, 985
BssNI	GRCGYC	1 cut(s)	865
Bst2UI	CCWGG	2 cut(s)	318, 968
Bst4CI	ACNGT	2 cut(s)	493, 683
Bst6I	CTCTTC	1 cut(s)	638
BstACI	GRCGYC	1 cut(s)	865
BstAUI	TGTACA	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	4 cut(s)	688, 882, 924, 996
BstF5I	GGATG	5 cut(s)	40, 574, 707, 913, 976
BstFNI	CGCG	1 cut(s)	849
BstHHI	GCGC	1 cut(s)	849
BstKTI	GATC	5 cut(s)	55, 510, 888, 893, 988
BstMAI	GTCTC	2 cut(s)	804, 814
BstMBI	GATC	5 cut(s)	52, 507, 885, 890, 985
BstNI	CCWGG	2 cut(s)	318, 968
BstSCI	CCNGG	2 cut(s)	316, 966
BstUI	CGCG	1 cut(s)	849
BstV1I	GCAGC	1 cut(s)	395
BstV2I	GAAGAC	2 cut(s)	537, 792
BsuRI	GGCC	2 cut(s)	321, 966
BtgZI	GCGATG	1 cut(s)	486
BtrI	CACGTC	1 cut(s)	824
BtsCI	GGATG	5 cut(s)	40, 574, 707, 913, 976
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	469
CciI	TCATGA	1 cut(s)	592
CfoI	GCGC	1 cut(s)	849
Cfr13I	GGNCC	3 cut(s)	183, 314, 445
CseI	GACGC	1 cut(s)	854
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	4 cut(s)	31, 119, 440, 593
CviJI	RGCY	8 cut(s)	79, 254, 321, 386, 427, 584, 951, 966
CviKI_1	RGCY	8 cut(s)	79, 254, 321, 386, 427, 584, 951, 966
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	4 cut(s)	688, 882, 924, 996
DpnI	GATC	5 cut(s)	54, 509, 887, 892, 987
DpnII	GATC	5 cut(s)	52, 507, 885, 890, 985
DraIII	CACNNNGTG	1 cut(s)	224
DriI	GACNNNNNGTC	1 cut(s)	443
Eam1104I	CTCTTC	1 cut(s)	638
Eam1105I	GACNNNNNGTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	638
Eco47I	GGWCC	3 cut(s)	183, 314, 445
Eco57I	CTGAAG	1 cut(s)	561
EcoO109I	RGGNCCY	2 cut(s)	183, 445
EcoRII	CCWGG	2 cut(s)	316, 966
Esp3I	CGTCTC	1 cut(s)	814
FaeI	CATG	4 cut(s)	34, 122, 443, 596
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	4 cut(s)	30, 118, 439, 592
FauI	CCCGC	2 cut(s)	460, 828
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	5 cut(s)	47, 581, 694, 920, 983
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	759
GlaI	GCGC	1 cut(s)	848
GluI	GCNGC	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	321, 966
HgaI	GACGC	1 cut(s)	854
HhaI	GCGC	1 cut(s)	849
Hin1I	GRCGYC	1 cut(s)	865
Hin1II	CATG	4 cut(s)	34, 122, 443, 596
Hin6I	GCGC	1 cut(s)	847
HinP1I	GCGC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	425
HphI	GGTGA	4 cut(s)	62, 269, 285, 1069
Hpy188III	TCNNGA	6 cut(s)	284, 312, 347, 398, 593, 869
Hpy99I	CGWCG	2 cut(s)	47, 870
HpyAV	CCTTC	9 cut(s)	332, 559, 600, 633, 648, 855, 976, 994, 1048
HpyCH4III	ACNGT	2 cut(s)	493, 683
HpyCH4IV	ACGT	1 cut(s)	823
HpyCH4V	TGCA	4 cut(s)	129, 172, 383, 1048
HpyF3I	CTNAG	4 cut(s)	688, 882, 924, 996
HpySE526I	ACGT	1 cut(s)	823
Hsp92I	GRCGYC	1 cut(s)	865
Hsp92II	CATG	4 cut(s)	34, 122, 443, 596
HspAI	GCGC	1 cut(s)	847
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	5 cut(s)	52, 507, 885, 890, 985
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	4 cut(s)	559, 911, 961, 1050
MaeI	CTAG	1 cut(s)	759
MaeII	ACGT	1 cut(s)	823
MaeIII	GTNAC	2 cut(s)	291, 347
MalI	GATC	5 cut(s)	54, 509, 887, 892, 987
MboI	GATC	5 cut(s)	52, 507, 885, 890, 985
MfeI	CAATTG	1 cut(s)	511
MluCI	AATT	2 cut(s)	112, 511
MlyI	GAGTC	5 cut(s)	299, 344, 722, 725, 734
MmeI	TCCRAC	1 cut(s)	1008
MnlI	CCTC	9 cut(s)	436, 458, 594, 639, 642, 697, 754, 789, 1080
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	318, 968
MunI	CAATTG	1 cut(s)	511
MvaI	CCWGG	2 cut(s)	318, 968
MvnI	CGCG	1 cut(s)	849
NdeII	GATC	5 cut(s)	52, 507, 885, 890, 985
NlaIII	CATG	4 cut(s)	34, 122, 443, 596
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	2 cut(s)	291, 347
PagI	TCATGA	1 cut(s)	592
PfeI	GAWTC	6 cut(s)	144, 665, 692, 698, 704, 920
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	5 cut(s)	298, 344, 721, 725, 733
PpsI	GAGTC	5 cut(s)	298, 344, 721, 725, 733
PpuMI	RGGWCCY	2 cut(s)	183, 445
PsiI	TTATAA	2 cut(s)	203, 525
Psp5II	RGGWCCY	2 cut(s)	183, 445
Psp6I	CCWGG	2 cut(s)	316, 966
PspGI	CCWGG	2 cut(s)	316, 966
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	3 cut(s)	183, 314, 445
PspPPI	RGGWCCY	2 cut(s)	183, 445
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	5 cut(s)	52, 507, 885, 890, 985
Sau96I	GGNCC	3 cut(s)	183, 314, 445
SchI	GAGTC	5 cut(s)	299, 344, 722, 725, 734
ScrFI	CCNGG	2 cut(s)	318, 968
SfaNI	GCATC	4 cut(s)	559, 911, 961, 1050
SinI	GGWCC	3 cut(s)	183, 314, 445
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	112, 511
SsiI	CCGC	3 cut(s)	105, 467, 835
SspMI	CTAG	1 cut(s)	759
StyD4I	CCNGG	2 cut(s)	316, 966
TaaI	ACNGT	2 cut(s)	493, 683
TaiI	ACGT	1 cut(s)	826
TaqI	TCGA	2 cut(s)	5, 45
TasI	AATT	2 cut(s)	112, 511
TatI	WGTACW	1 cut(s)	430
TfiI	GAWTC	6 cut(s)	144, 665, 692, 698, 704, 920
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	2 cut(s)	291, 347
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	2 cut(s)	291, 347
TspDTI	ATGAA	6 cut(s)	19, 75, 489, 543, 609, 657
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	158
VpaK11BI	GGWCC	3 cut(s)	183, 314, 445
XapI	RAATTY	1 cut(s)	112
XspI	CTAG	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.