MD15G1134600.v1.1

Nuclear transcription factor Y subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0018360
Physical Location & Seq
Forward (+)
9778391 .. 9779101
711 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1134600.v1.1.491

Sequence Viewer

Length: 711 bp
ATGAAAAGGGAAACGGATGATGAGAGGCTATATGTGCCAAGTGGAGGAGGAGGAAGCCCAGAAACCCCATGCAGTTTAAAGAGCAGTACTACTGCTACTGCATGTGCAAGTGCTAGTAACAACAACAACAATCACCAACACCACAACCACCACAACAAAGAACAAGATAGGTTCCTTCCCATCGCCAACGTCGGTCGCATTATGAAGAAAGTGATTCCGGGCAACGGAAAAATCTCAAAAGATGCAAAGGAAACTGTCCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTTACAGGAGAAGCATCCGACAAATGCCAAAGAGAAAAGCGCAAGACCATCAACGGCGAGGACATCATTTGGGCTATCACAACGCTCGGGTTCGAGGATTATGTACATCCATTAAAATCGTACCTCCATAAATATAGAGATCTCGAAGGAGAAAAGCTAAACGTTCCAAAGCAACAAAGATCGGAGCAAAGGCTGCACCAGCAACAACAACAACCAGATCAACACGATCATCACAACCAAACTTTACTACCTTACGATAATAATAGTAGTAGCAGTGTATATTCTTCGACGACGAATGTCATATCTCAGCCGTCATTCATGGCTGATCATCATCAGGCCTTTTCTTTGCCTTTCTCCCCAAGTTCAATTCAAAAACAGTTTCAGCCACAACAGGATCAGATTGATTCAGTGGGGCATTGGTAA

Protein Analysis

237

Amino Acids

26.72

Weight (kDa)

6.52

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 45 - 122 1.8e-07 Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF PF00808 58 - 122 5.9e-28 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24590
malus_domestica MD15G1134600.v1.1
prunus_persica Prupe.4G273800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0121991
rosa_laevigata RLG00000018645
rosa_roxburghii Rroxscaffold_2G00122090
rosa_rugosa Rorug02G0235900
rosa_samantha Rh2BG303000 Rh2CG281600
rosa_wichuraiana Rw2G023460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 450
AclWI GGATC 1 cut(s) 690
AfaI GTAC 3 cut(s) 88, 393, 410
AfiI CCNNNNNNNGG 2 cut(s) 44, 224
AgsI TTSAA 2 cut(s) 654, 659
AluBI AGCT 2 cut(s) 285, 445
AluI AGCT 2 cut(s) 285, 445
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 1 cut(s) 690
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 1 cut(s) 624
ApeKI GCWGC 1 cut(s) 481
AspLEI GCGC 1 cut(s) 330
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 374
BbvI GCAGC 1 cut(s) 468
BccI CCATC 2 cut(s) 188, 344
BceAI ACGGC 2 cut(s) 358, 583
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 1 cut(s) 114
BglII AGATCT 1 cut(s) 427
BisI GCNGC 1 cut(s) 482
BlsI GCNGC 1 cut(s) 483
BmcAI AGTACT 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 374
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 2 cut(s) 232, 311
BoxI GACNNNNGTC 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 219
BsaBI GATNNNNATC 1 cut(s) 618
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 224
Bse8I GATNNNNATC 1 cut(s) 618
BseGI GGATG 3 cut(s) 22, 302, 394
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 2 cut(s) 44, 224
BseMII CTCAG 1 cut(s) 608
BseRI GAGGAG 2 cut(s) 60, 63
BseXI GCAGC 1 cut(s) 468
BsgI GTGCAG 1 cut(s) 467
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 1 cut(s) 626
BsiEI CGRYCG 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 44, 224
BsmAI GTCTC 1 cut(s) 274
BsmBI CGTCTC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 1 cut(s) 626
BsoBI CYCGRG 1 cut(s) 374
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 6 cut(s) 427, 467, 505, 514, 613, 682
BspANI GGCC 1 cut(s) 626
BspCNI CTCAG 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 173
BspPI GGATC 1 cut(s) 690
BsrGI TGTACA 1 cut(s) 391
BssMI GATC 6 cut(s) 427, 467, 505, 514, 613, 682
Bst4CI ACNGT 2 cut(s) 256, 666
BstAPI GCANNNNNTGC 1 cut(s) 481
BstAUI TGTACA 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 594
BstF5I GGATG 3 cut(s) 22, 302, 394
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 6 cut(s) 430, 470, 508, 517, 616, 685
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 6 cut(s) 427, 467, 505, 514, 613, 682
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 3 cut(s) 34, 481, 487
BstNSI RCATGY 1 cut(s) 105
BstPAI GACNNNNGTC 1 cut(s) 584
BstSCI CCNGG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuRI GGCC 1 cut(s) 626
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 3 cut(s) 22, 302, 394
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 2 cut(s) 568, 702
CfoI GCGC 1 cut(s) 330
CseI GACGC 1 cut(s) 256
Csp6I GTAC 3 cut(s) 87, 392, 409
CviAII CATG 3 cut(s) 69, 102, 607
CviQI GTAC 3 cut(s) 87, 392, 409
DdeI CTNAG 1 cut(s) 594
DpnI GATC 6 cut(s) 429, 469, 507, 516, 615, 684
DpnII GATC 6 cut(s) 427, 467, 505, 514, 613, 682
DraI TTTAAA 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 374
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 3 cut(s) 72, 105, 610
FatI CATG 3 cut(s) 68, 101, 606
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 1 cut(s) 482
FokI GGATG 3 cut(s) 29, 289, 381
Fsp4HI GCNGC 1 cut(s) 482
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 329
GluI GCNGC 1 cut(s) 482
HaeIII GGCC 1 cut(s) 626
HapII CCGG 1 cut(s) 218
HgaI GACGC 1 cut(s) 256
HhaI GCGC 1 cut(s) 330
Hin1II CATG 3 cut(s) 72, 105, 610
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HinfI GANTC 2 cut(s) 214, 692
HpaII CCGG 1 cut(s) 218
HphI GGTGA 1 cut(s) 125
Hpy188I TCNGA 4 cut(s) 274, 307, 472, 687
Hpy188III TCNNGA 1 cut(s) 431
Hpy99I CGWCG 3 cut(s) 194, 580, 583
HpyAV CCTTC 2 cut(s) 185, 428
HpyCH4III ACNGT 2 cut(s) 256, 666
HpyCH4IV ACGT 2 cut(s) 189, 450
HpyCH4V TGCA 5 cut(s) 72, 101, 107, 245, 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 481, 487
HpyF3I CTNAG 1 cut(s) 594
HpySE526I ACGT 2 cut(s) 189, 450
Hsp92II CATG 3 cut(s) 72, 105, 610
HspAI GCGC 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 6 cut(s) 427, 467, 505, 514, 613, 682
LmnI GCTCC 1 cut(s) 472
LpnPI CCDG 7 cut(s) 72, 231, 279, 500, 516, 608, 665
Lsp1109I GCAGC 1 cut(s) 468
LweI GCATC 2 cut(s) 232, 311
MaeI CTAG 1 cut(s) 114
MaeII ACGT 2 cut(s) 189, 450
MaeIII GTNAC 2 cut(s) 116, 289
MalI GATC 6 cut(s) 429, 469, 507, 516, 615, 684
MboI GATC 6 cut(s) 427, 467, 505, 514, 613, 682
MboII GAAGA 2 cut(s) 217, 564
MflI RGATCY 1 cut(s) 427
MluCI AATT 1 cut(s) 654
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 7 cut(s) 18, 38, 41, 44, 340, 376, 422
MseI TTAA 2 cut(s) 77, 401
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 269
MwoI GCNNNNNNNGC 3 cut(s) 34, 481, 487
NciI CCSGG 1 cut(s) 219
NdeII GATC 6 cut(s) 427, 467, 505, 514, 613, 682
NlaIII CATG 3 cut(s) 72, 105, 610
NlaIV GGNNCC 1 cut(s) 173
NspI RCATGY 1 cut(s) 105
PceI AGGCCT 1 cut(s) 626
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 214, 692
PkrI GCNGC 1 cut(s) 483
PshAI GACNNNNGTC 1 cut(s) 584
Psp1406I AACGTT 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 3 cut(s) 88, 393, 410
RsaNI GTAC 3 cut(s) 87, 392, 409
SaqAI TTAA 2 cut(s) 77, 401
SatI GCNGC 1 cut(s) 482
Sau3AI GATC 6 cut(s) 427, 467, 505, 514, 613, 682
ScaI AGTACT 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 219
SetI ASST 7 cut(s) 173, 192, 287, 414, 447, 453, 541
SfaNI GCATC 2 cut(s) 232, 311
Sse9I AATT 1 cut(s) 654
SseBI AGGCCT 1 cut(s) 626
SspMI CTAG 1 cut(s) 114
StuI AGGCCT 1 cut(s) 626
StyD4I CCNGG 1 cut(s) 217
TaaI ACNGT 2 cut(s) 256, 666
TaiI ACGT 2 cut(s) 192, 453
TaqI TCGA 3 cut(s) 381, 432, 575
TaqII GACCGA 1 cut(s) 182
TasI AATT 1 cut(s) 654
TatI WGTACW 2 cut(s) 86, 391
TfiI GAWTC 2 cut(s) 214, 692
Tru1I TTAA 2 cut(s) 77, 401
Tru9I TTAA 2 cut(s) 77, 401
TscAI CASTG 2 cut(s) 568, 702
TseI GCWGC 1 cut(s) 481
TspDTI ATGAA 4 cut(s) 17, 218, 268, 595
TspGWI ACGGA 2 cut(s) 29, 240
TspRI CASTG 2 cut(s) 568, 702
XceI RCATGY 1 cut(s) 105
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.