Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0018360

Physical Location & Seq

Genomic Coordinates Forward (+)

23568671 .. 23570147

Gene Structure 1477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0235900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCCTGCAATGGAGCCTCTTCTTCCTCTGGTTCTCTCACCCCTCCATGCAGACATGATGTGTTTTTGAGTTTTAGAGGTGAGGATACACGCTACGGTTTTACACATCATCTATACAAGGCTTTAGATAGAGAGAAAATCAAGGCTTTCTTTGATTATCATACGCTCAGTAGAGGAGAAAAGATATCAGACGCACTTCTTCAAGCAATAGAAGTTTCAAGGATTTCTGTGGTGATATGCTCTGAAAACTATGCTGCGTCAGGTTGGTGCTTGGATGAACTTGTCAAGATCCTCGAATGTCAAAAATCAAAGCAGCAAATCGTTATGCCAATTTTTTACAAAGTGGATCCATCACATGTACGGCATCAAACTGGTAGTTTCGGTAAAGCCCTTGCCAAGTTGAAATACAACATGGACAAGATCTCAAGATGGAGGATAGCTCTTACAGAAGTAGCAAATTTTTCAGGATGGCATTATTCGGACGGGTATGAAAATGATATTATTGAGAATATTGTTAAAGAGATATTAAGAACGCTCGACCAAAAGAAGAATGAGGATGTGGCTGGCCTCAACCAGGGAAAAGCCCAGACCGACCTCGACGGAGTGTACTTGATCGAAGAGACTGTTCAGGAAATATCCCAAGCATTACCTTCCCCGCCTCCCCTGGCATATAGAGAGCTGATAACCAAGCACCCATTTGATCAGCTTGAGAGTATATGTCCACCAGGTGGAAGTGACAAGATAGTCCTCTATACAACATCGCTGGGAGCGGTGTTGAAGACTTACCAGGCATGCAATGACGTGCGAACGGCTCTGACAAACCTCGGGGTGATGTTTTCCGAGCGTGACCTTTCATGGGAGCATGAAGATTACCTCAAAGAGTTGAGGGAGCTGATGATTGACAAAGGAACAGAAGCTACGGTGCCTCCAAGATTGTTTGTCAAGGGAAGATATGTGGGTGGGTCTGAGGAGGTGTTTAAGCTTTTAGAGGAGGGCTGGTTTCACCAGTTTTGTCAACCAAACTCAAACTTCATGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

346

Amino Acids

39.23

Weight (kDa)

5.74

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	19 - 185	4.4e-58	TIR domain
TIR_2	PF13676	21 - 117	4.9e-15	TIR domain
Glutaredoxin	PF00462	248 - 319	1e-06	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018360)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24590
malus_domestica	MD15G1134600.v1.1
prunus_persica	Prupe.4G273800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0121991
rosa_laevigata	RLG00000018645
rosa_roxburghii	Rroxscaffold_2G00122090
rosa_rugosa	Rorug02G0235900
rosa_samantha	Rh2BG303000 Rh2CG281600
rosa_wichuraiana	Rw2G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	743
AccB1I	GGYRCC	1 cut(s)	922
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccBSI	CCGCTC	1 cut(s)	770
AciI	CCGC	2 cut(s)	656, 770
AclWI	GGATC	3 cut(s)	283, 341, 354
AcsI	RAATTY	1 cut(s)	457
AdeI	CACNNNGTG	1 cut(s)	728
AfaI	GTAC	2 cut(s)	360, 608
AfiI	CCNNNNNNNGG	3 cut(s)	574, 728, 856
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	4 cut(s)	203, 219, 403, 778
AjiI	CACGTC	1 cut(s)	802
AjnI	CCWGG	4 cut(s)	573, 663, 724, 786
AluBI	AGCT	6 cut(s)	440, 679, 706, 892, 917, 982
AluI	AGCT	6 cut(s)	440, 679, 706, 892, 917, 982
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	3 cut(s)	283, 341, 354
Ama87I	CYCGRG	1 cut(s)	824
AoxI	GGCC	2 cut(s)	3, 565
ApeKI	GCWGC	2 cut(s)	254, 313
ApoI	RAATTY	1 cut(s)	457
AsuHPI	GGTGA	5 cut(s)	31, 92, 244, 841, 995
AvaI	CYCGRG	1 cut(s)	824
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	922
BbsI	GAAGAC	1 cut(s)	785
BbvI	GCAGC	2 cut(s)	241, 325
BccI	CCATC	3 cut(s)	358, 423, 462
BceAI	ACGGC	2 cut(s)	377, 825
BciT130I	CCWGG	4 cut(s)	575, 665, 726, 788
BciVI	GTATCC	1 cut(s)	79
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	614
BfuI	GTATCC	1 cut(s)	79
BglII	AGATCT	1 cut(s)	420
BisI	GCNGC	2 cut(s)	255, 314
BlsI	GCNGC	2 cut(s)	256, 315
Bme1390I	CCNGG	4 cut(s)	575, 665, 726, 788
BmeT110I	CYCGRG	1 cut(s)	824
BmgBI	CACGTC	1 cut(s)	802
BmiI	GGNNCC	3 cut(s)	16, 348, 924
BmrFI	CCNGG	4 cut(s)	575, 665, 726, 788
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	785
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpuEI	CTTGAG	2 cut(s)	409, 728
BsaJI	CCNNGG	3 cut(s)	574, 663, 823
BsaXI	ACNNNNNCTCC	4 cut(s)	910, 940, 983, 1013
Bsc4I	CCNNNNNNNGG	3 cut(s)	574, 728, 856
Bse1I	ACTGG	2 cut(s)	376, 1006
Bse3DI	GCAATG	2 cut(s)	16, 802
BseBI	CCWGG	4 cut(s)	575, 665, 726, 788
BseDI	CCNNGG	3 cut(s)	574, 663, 823
BseGI	GGATG	3 cut(s)	280, 473, 562
BseLI	CCNNNNNNNGG	3 cut(s)	574, 728, 856
BseMI	GCAATG	2 cut(s)	16, 802
BseMII	CTCAG	2 cut(s)	181, 957
BseNI	ACTGG	2 cut(s)	376, 1006
BseRI	GAGGAG	3 cut(s)	189, 983, 1004
BseXI	GCAGC	2 cut(s)	241, 325
BseYI	CCCAGC	1 cut(s)	763
BshFI	GGCC	2 cut(s)	5, 567
BshNI	GGYRCC	1 cut(s)	922
BsiHKCI	CYCGRG	1 cut(s)	824
BslI	CCNNNNNNNGG	3 cut(s)	574, 728, 856
BsmAI	GTCTC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	5, 567
BsoBI	CYCGRG	1 cut(s)	824
Bsp143I	GATC	5 cut(s)	288, 346, 420, 612, 700
BspACI	CCGC	2 cut(s)	656, 770
BspANI	GGCC	2 cut(s)	5, 567
BspCNI	CTCAG	2 cut(s)	180, 958
BspHI	TCATGA	1 cut(s)	1032
BspLI	GGNNCC	3 cut(s)	16, 348, 924
BspPI	GGATC	3 cut(s)	283, 341, 354
BspT107I	GGYRCC	1 cut(s)	922
BsrBI	CCGCTC	1 cut(s)	770
BsrDI	GCAATG	2 cut(s)	16, 802
BsrI	ACTGG	2 cut(s)	376, 1006
BssECI	CCNNGG	3 cut(s)	574, 663, 823
BssMI	GATC	5 cut(s)	288, 346, 420, 612, 700
Bst2UI	CCWGG	4 cut(s)	575, 665, 726, 788
Bst4CI	ACNGT	3 cut(s)	98, 625, 922
Bst6I	CTCTTC	2 cut(s)	25, 612
BstC8I	GCNNGC	3 cut(s)	7, 565, 793
BstDEI	CTNAG	2 cut(s)	167, 966
BstENI	CCTNNNNNAGG	1 cut(s)	572
BstF5I	GGATG	3 cut(s)	280, 473, 562
BstKTI	GATC	5 cut(s)	291, 349, 423, 615, 703
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	5 cut(s)	288, 346, 420, 612, 700
BstNI	CCWGG	4 cut(s)	575, 665, 726, 788
BstNSI	RCATGY	2 cut(s)	359, 795
BstSCI	CCNGG	4 cut(s)	573, 663, 724, 786
BstV1I	GCAGC	2 cut(s)	241, 325
BstV2I	GAAGAC	1 cut(s)	785
BstX2I	RGATCY	3 cut(s)	288, 346, 420
BstYI	RGATCY	3 cut(s)	288, 346, 420
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	5, 567
BtgZI	GCGATG	1 cut(s)	744
BtrI	CACGTC	1 cut(s)	802
BtsCI	GGATG	3 cut(s)	280, 473, 562
Cac8I	GCNNGC	3 cut(s)	7, 565, 793
CciI	TCATGA	1 cut(s)	1032
CseI	GACGC	2 cut(s)	200, 246
CsiI	ACCWGGT	1 cut(s)	724
Csp6I	GTAC	2 cut(s)	359, 607
CviAII	CATG	8 cut(s)	48, 56, 356, 412, 792, 855, 863, 1033
CviQI	GTAC	2 cut(s)	359, 607
DdeI	CTNAG	2 cut(s)	167, 966
DpnI	GATC	5 cut(s)	290, 348, 422, 614, 702
DpnII	GATC	5 cut(s)	288, 346, 420, 612, 700
DraIII	CACNNNGTG	1 cut(s)	728
DrdI	GACNNNNNNGTC	1 cut(s)	743
DseDI	GACNNNNNNGTC	1 cut(s)	743
Eam1104I	CTCTTC	2 cut(s)	25, 612
EarI	CTCTTC	2 cut(s)	25, 612
Eco32I	GATATC	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	824
EcoNI	CCTNNNNNAGG	1 cut(s)	572
EcoRII	CCWGG	4 cut(s)	573, 663, 724, 786
EcoRV	GATATC	1 cut(s)	186
FaeI	CATG	8 cut(s)	51, 59, 359, 415, 795, 858, 866, 1036
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	8 cut(s)	47, 55, 355, 411, 791, 854, 862, 1032
FauI	CCCGC	1 cut(s)	663
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	255, 314
FokI	GGATG	3 cut(s)	287, 480, 569
Fsp4HI	GCNGC	2 cut(s)	255, 314
GluI	GCNGC	2 cut(s)	255, 314
GsaI	CCCAGC	1 cut(s)	767
HaeIII	GGCC	2 cut(s)	5, 567
HgaI	GACGC	2 cut(s)	200, 246
Hin1II	CATG	8 cut(s)	51, 59, 359, 415, 795, 858, 866, 1036
HincII	GTYRAC	1 cut(s)	1016
HindII	GTYRAC	1 cut(s)	1016
HindIII	AAGCTT	1 cut(s)	980
HphI	GGTGA	5 cut(s)	31, 92, 244, 841, 995
Hpy166II	GTNNAC	3 cut(s)	607, 722, 1016
Hpy188I	TCNGA	6 cut(s)	190, 244, 481, 816, 841, 967
Hpy188III	TCNNGA	5 cut(s)	286, 426, 465, 629, 1033
Hpy8I	GTNNAC	3 cut(s)	607, 722, 1016
Hpy99I	CGWCG	1 cut(s)	602
HpyAV	CCTTC	1 cut(s)	660
HpyCH4III	ACNGT	3 cut(s)	98, 625, 922
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	3 cut(s)	9, 51, 795
HpyF3I	CTNAG	2 cut(s)	167, 966
HpySE526I	ACGT	1 cut(s)	801
Hsp92II	CATG	8 cut(s)	51, 59, 359, 415, 795, 858, 866, 1036
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	5 cut(s)	288, 346, 420, 612, 700
LmnI	GCTCC	4 cut(s)	14, 767, 859, 889
Lsp1109I	GCAGC	2 cut(s)	241, 325
LweI	GCATC	1 cut(s)	373
MabI	ACCWGGT	1 cut(s)	724
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	2 cut(s)	734, 845
MalI	GATC	5 cut(s)	290, 348, 422, 614, 702
MbiI	CCGCTC	1 cut(s)	770
MboI	GATC	5 cut(s)	288, 346, 420, 612, 700
MboII	GAAGA	8 cut(s)	12, 15, 191, 559, 629, 790, 878, 960
MflI	RGATCY	3 cut(s)	288, 346, 420
MluCI	AATT	2 cut(s)	330, 457
MseI	TTAA	3 cut(s)	516, 527, 978
MspR9I	CCNGG	4 cut(s)	575, 665, 726, 788
MvaI	CCWGG	4 cut(s)	575, 665, 726, 788
NdeII	GATC	5 cut(s)	288, 346, 420, 612, 700
NlaIII	CATG	8 cut(s)	51, 59, 359, 415, 795, 858, 866, 1036
NlaIV	GGNNCC	3 cut(s)	16, 348, 924
NmuCI	GTSAC	2 cut(s)	734, 845
NspI	RCATGY	2 cut(s)	359, 795
PaeI	GCATGC	1 cut(s)	795
PagI	TCATGA	1 cut(s)	1032
PciI	ACATGT	1 cut(s)	355
PflMI	CCANNNNNTGG	1 cut(s)	728
PkrI	GCNGC	2 cut(s)	256, 315
PscI	ACATGT	1 cut(s)	355
Psp6I	CCWGG	4 cut(s)	573, 663, 724, 786
PspFI	CCCAGC	1 cut(s)	763
PspGI	CCWGG	4 cut(s)	573, 663, 724, 786
PspN4I	GGNNCC	3 cut(s)	16, 348, 924
PsrI	GAACNNNNNNTAC	2 cut(s)	901, 933
PsuI	RGATCY	3 cut(s)	288, 346, 420
RsaI	GTAC	2 cut(s)	360, 608
RsaNI	GTAC	2 cut(s)	359, 607
SaqAI	TTAA	3 cut(s)	516, 527, 978
SatI	GCNGC	2 cut(s)	255, 314
Sau3AI	GATC	5 cut(s)	288, 346, 420, 612, 700
ScrFI	CCNGG	4 cut(s)	575, 665, 726, 788
SexAI	ACCWGGT	1 cut(s)	724
SfaNI	GCATC	1 cut(s)	373
SmlI	CTYRAG	2 cut(s)	424, 707
SmoI	CTYRAG	2 cut(s)	424, 707
SphI	GCATGC	1 cut(s)	795
Sse9I	AATT	2 cut(s)	330, 457
SsiI	CCGC	2 cut(s)	656, 770
SspI	AATATT	1 cut(s)	511
StyD4I	CCNGG	4 cut(s)	573, 663, 724, 786
TaaI	ACNGT	3 cut(s)	98, 625, 922
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	4 cut(s)	294, 537, 597, 615
TaqII	GACCGA	1 cut(s)	605
TasI	AATT	2 cut(s)	330, 457
TatI	WGTACW	1 cut(s)	606
Tru1I	TTAA	3 cut(s)	516, 527, 978
Tru9I	TTAA	3 cut(s)	516, 527, 978
TseFI	GTSAC	2 cut(s)	734, 845
TseI	GCWGC	2 cut(s)	254, 313
Tsp45I	GTSAC	2 cut(s)	734, 845
TspDTI	ATGAA	5 cut(s)	291, 504, 843, 879, 1021
TspGWI	ACGGA	1 cut(s)	615
Van91I	CCANNNNNTGG	1 cut(s)	728
XagI	CCTNNNNNAGG	1 cut(s)	572
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	2 cut(s)	359, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.