Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018360

Physical Location & Seq

Genomic Coordinates Reverse (-)

54990269 .. 54991464

Gene Structure 1196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAAGATGACAACCATGGAAATAATAGGCTAAATGGTCCAAATGGAGGAAGCCCTGAAAACCCATGTTTAAACAACAGCACTCCTGCTAGTAGCTGCAACTCCAACATTAATATTCACCACAATCATAATCACAGTAACAATCACAATCATCACCACCACAGCAGCAATAAAGAACAAGACAGGTTTCTTCCCATTGCGAATGTGGGTCGCATTATGAAGAAAGTGATTCCGGGCAATGGAAAAATCTCGAAAGATGCAAAAGAGACTGTCCAAGAATGTGTGTCCGAGTTCATTAGCTTTGTCACCGGTGAAGCCTCTGATAAATGTCAAAGGGAAAAGAGGAAAACCATCAACGGCGAAGACATCATATGGGCTATCACAACACTAGGCTTTGAGGATTACGTGCACCCTCTAAAATTGTACCTCCAAAAATATAGAGAGCTTGAAGGGGAGAAGCTAAATGTTCCAAAGCAACAAAGATTGGAGCAAAGGCAGCAACAACAGCAAGTAGTACATCAAGAACAAGAGCAACAAAGTATACCTAATTCGTATAGTGTATATTCATCGACGAGTCTCTTGTCTCAACCGACTTCTTTCATCACTACTCATCATCATGATCCCGCATTTTCGTTGCCTTTCTCGCCAAGCTCAATTCAAAAACAGCTACAGCCACAAGATCAGATTGATTCAGTGGGGCATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

235

Amino Acids

26.73

Weight (kDa)

6.45

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	51 - 127	2.4e-07	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	63 - 127	5.9e-28	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018360)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24590
malus_domestica	MD15G1134600.v1.1
prunus_persica	Prupe.4G273800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0121991
rosa_laevigata	RLG00000018645
rosa_roxburghii	Rroxscaffold_2G00122090
rosa_rugosa	Rorug02G0235900
rosa_samantha	Rh2BG303000 Rh2CG281600
rosa_wichuraiana	Rw2G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	541
AciI	CCGC	1 cut(s)	624
AclWI	GGATC	1 cut(s)	614
AfaI	GTAC	2 cut(s)	425, 516
AfiI	CCNNNNNNNGG	2 cut(s)	47, 239
AgeI	ACCGGT	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	449, 659
AluBI	AGCT	6 cut(s)	96, 300, 445, 460, 651, 667
AluI	AGCT	6 cut(s)	96, 300, 445, 460, 651, 667
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	3 cut(s)	260, 581, 588
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	614
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	3 cut(s)	96, 165, 496
AseI	ATTAAT	1 cut(s)	111
AsiGI	ACCGGT	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	4 cut(s)	110, 146, 298, 323
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	83, 177, 508
BccI	CCATC	1 cut(s)	359
BceAI	ACGGC	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	260, 581, 588
BfaI	CTAG	2 cut(s)	90, 389
BfmI	CTRYAG	1 cut(s)	668
BisI	GCNGC	3 cut(s)	97, 166, 497
BlsI	GCNGC	3 cut(s)	98, 167, 498
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 239
Bse118I	RCCGGY	1 cut(s)	308
Bse3DI	GCAATG	2 cut(s)	195, 244
BseDI	CCNNGG	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	47, 239
BseMI	GCAATG	2 cut(s)	195, 244
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	83, 177, 508
BshTI	ACCGGT	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	233, 309
BslI	CCNNNNNNNGG	2 cut(s)	47, 239
BsmAI	GTCTC	3 cut(s)	260, 581, 588
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	619, 679
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	1 cut(s)	624
BspHI	TCATGA	1 cut(s)	616
BspPI	GGATC	1 cut(s)	614
BsrDI	GCAATG	2 cut(s)	195, 244
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	619, 679
BssNAI	GTATAC	1 cut(s)	542
BssT1I	CCWWGG	1 cut(s)	16
Bst1107I	GTATAC	1 cut(s)	542
Bst4CI	ACNGT	2 cut(s)	137, 271
BstBAI	YACGTR	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	16
BstKTI	GATC	2 cut(s)	622, 682
BstMAI	GTCTC	3 cut(s)	260, 581, 588
BstMBI	GATC	2 cut(s)	619, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	496, 505, 643
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	668
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	3 cut(s)	83, 177, 508
BstV2I	GAAGAC	1 cut(s)	369
BstZ17I	GTATAC	1 cut(s)	542
BtgI	CCRYGG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	699
CciI	TCATGA	1 cut(s)	616
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	424, 515
CspAI	ACCGGT	1 cut(s)	308
CviAII	CATG	3 cut(s)	17, 66, 617
CviQI	GTAC	2 cut(s)	424, 515
DpnI	GATC	2 cut(s)	621, 681
DpnII	GATC	2 cut(s)	619, 679
DraI	TTTAAA	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	20, 69, 620
FatI	CATG	3 cut(s)	16, 65, 616
FauI	CCCGC	1 cut(s)	631
FauNDI	CATATG	1 cut(s)	371
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	3 cut(s)	97, 166, 497
Fsp4HI	GCNGC	3 cut(s)	97, 166, 497
FspBI	CTAG	2 cut(s)	90, 389
GluI	GCNGC	3 cut(s)	97, 166, 497
HapII	CCGG	2 cut(s)	233, 309
Hin1II	CATG	3 cut(s)	20, 69, 620
HinfI	GANTC	3 cut(s)	229, 574, 689
HpaII	CCGG	2 cut(s)	233, 309
HphI	GGTGA	4 cut(s)	110, 146, 298, 323
Hpy166II	GTNNAC	2 cut(s)	409, 542
Hpy188I	TCNGA	3 cut(s)	289, 322, 684
Hpy188III	TCNNGA	3 cut(s)	250, 521, 617
Hpy8I	GTNNAC	2 cut(s)	409, 542
Hpy99I	CGWCG	1 cut(s)	574
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	2 cut(s)	137, 271
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	99, 260, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	496, 505, 643
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	20, 69, 620
Kzo9I	GATC	2 cut(s)	619, 679
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	5 cut(s)	69, 99, 169, 246, 322
Lsp1109I	GCAGC	3 cut(s)	83, 177, 508
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	90, 389
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	137, 304
MalI	GATC	2 cut(s)	621, 681
MboI	GATC	2 cut(s)	619, 679
MboII	GAAGA	4 cut(s)	17, 182, 232, 374
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	3 cut(s)	419, 547, 654
MlyI	GAGTC	1 cut(s)	583
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	41, 328, 336, 391, 423, 437
MseI	TTAA	2 cut(s)	71, 111
MslI	CAYNNNNRTG	1 cut(s)	615
MspI	CCGG	2 cut(s)	233, 309
MspR9I	CCNGG	1 cut(s)	234
MssI	GTTTAAAC	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	496, 505, 643
NciI	CCSGG	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	16
NdeI	CATATG	1 cut(s)	371
NdeII	GATC	2 cut(s)	619, 679
NlaIII	CATG	3 cut(s)	20, 69, 620
NmuCI	GTSAC	1 cut(s)	304
PagI	TCATGA	1 cut(s)	616
PfeI	GAWTC	2 cut(s)	229, 689
PinAI	ACCGGT	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	98, 167, 498
PleI	GAGTC	1 cut(s)	582
PmeI	GTTTAAAC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	582
Ppu21I	YACGTR	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	38
RsaI	GTAC	2 cut(s)	425, 516
RsaNI	GTAC	2 cut(s)	424, 515
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	71, 111
SatI	GCNGC	3 cut(s)	97, 166, 497
Sau3AI	GATC	2 cut(s)	619, 679
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	583
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	668
SgrAI	CRCCGGYG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	615
Sse9I	AATT	3 cut(s)	419, 547, 654
SsiI	CCGC	1 cut(s)	624
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	2 cut(s)	90, 389
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	137, 271
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	2 cut(s)	251, 569
TasI	AATT	3 cut(s)	419, 547, 654
TatI	WGTACW	1 cut(s)	514
TfiI	GAWTC	2 cut(s)	229, 689
Tru1I	TTAA	2 cut(s)	71, 111
Tru9I	TTAA	2 cut(s)	71, 111
TscAI	CASTG	1 cut(s)	699
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	3 cut(s)	96, 165, 496
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	4 cut(s)	233, 283, 555, 589
TspRI	CASTG	1 cut(s)	699
VneI	GTGCAC	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	38
VspI	ATTAAT	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	541
XspI	CTAG	2 cut(s)	90, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.