Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0018360

Physical Location & Seq

Genomic Coordinates Reverse (-)

22774061 .. 22774753

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G273800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAAGATGAGAGGCTAAATGGGCCAAGTGGAGGGAGCCCAGAAAACCCATGTGGTGTAAAGAGCAGTGCAAGTAGCAATAACAACAACGGCAATAGCACTTACAATAACAATAACAATAGCAATAAAGAACAAGATAGATTCCTCCCCATAGCAAATGTTGGTCGCATTATGAAGAAAGTGATCCCAGGCAATGGAAAAATCTCAAAAGATGCAAAGGAGACTGTTCAAGAATGTGTCTCTGAGTTCATAAGCTTTGTCACAGGAGAAGCTTCTGATAAATGCCAGAGAGAAAAGAGGAAGACCATCAACGGTGAAGATATCATCTGGGCCATCACAACCCTCGGATTTGAGGACTATGTACATCCATTAAAGCTCTACCTCCAGAAATATAGAGAACTTGAAGGGGAAAAGCTAAATGTTCCAAAGCAACAAAGATTGGAACAAAGGCAGCTGCAGCAACACCAACAAAACCACCACCACCAGCAACCAGAACAACAAGAACAACAAACTTTAGTATCTGCTTACGATAATAGTGTATATTCTTCCACCAATCTCCTTTCTCAGCCATCTTTCATAGCCGCTGCCGCTGCGGATCATCATCAGACAGCCTTCTCTTTGCCCTTCTCCCCAACTTCAATTCAAAAACAATTGCACCCACAAGATCATATTGATTCAGTGGGGCATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

231

Amino Acids

25.92

Weight (kDa)

6.2

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018360)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24590
malus_domestica	MD15G1134600.v1.1
prunus_persica	Prupe.4G273800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0121991
rosa_laevigata	RLG00000018645
rosa_roxburghii	Rroxscaffold_2G00122090
rosa_rugosa	Rorug02G0235900
rosa_samantha	Rh2BG303000 Rh2CG281600
rosa_wichuraiana	Rw2G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AciI	CCGC	3 cut(s)	582, 588, 593
AclWI	GGATC	2 cut(s)	178, 603
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	2 cut(s)	32, 194
AgsI	TTSAA	4 cut(s)	230, 404, 639, 644
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	5 cut(s)	255, 272, 376, 415, 454
AluI	AGCT	5 cut(s)	255, 272, 376, 415, 454
Alw26I	GTCTC	2 cut(s)	215, 244
AlwI	GGATC	2 cut(s)	178, 603
AoxI	GGCC	2 cut(s)	23, 330
ApeKI	GCWGC	5 cut(s)	451, 454, 457, 584, 590
AspS9I	GGNCC	2 cut(s)	23, 330
AsuHPI	GGTGA	1 cut(s)	326
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
BanII	GRGCYC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	308
BbvI	GCAGC	5 cut(s)	441, 463, 469, 571, 577
BccI	CCATC	3 cut(s)	314, 341, 577
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	215, 244
BfmI	CTRYAG	1 cut(s)	455
BisI	GCNGC	7 cut(s)	452, 455, 458, 582, 585, 588, 591
BlsI	GCNGC	7 cut(s)	453, 456, 459, 583, 586, 589, 592
Bme1390I	CCNGG	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	23, 330
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	187, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 194
Bse3DI	GCAATG	1 cut(s)	199
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	187, 343
BseGI	GGATG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	2 cut(s)	32, 194
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	234, 578
BseXI	GCAGC	5 cut(s)	441, 463, 469, 571, 577
BshFI	GGCC	2 cut(s)	25, 332
BslI	CCNNNNNNNGG	2 cut(s)	32, 194
BsmAI	GTCTC	2 cut(s)	215, 244
BsnI	GGCC	2 cut(s)	25, 332
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	183, 595, 664
BspACI	CCGC	3 cut(s)	582, 588, 593
BspANI	GGCC	2 cut(s)	25, 332
BspCNI	CTCAG	2 cut(s)	235, 577
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	459
BspPI	GGATC	2 cut(s)	178, 603
BsrDI	GCAATG	1 cut(s)	199
BsrGI	TGTACA	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	187, 343
BssMI	GATC	3 cut(s)	183, 595, 664
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	226, 314
BstAUI	TGTACA	1 cut(s)	361
BstDEI	CTNAG	2 cut(s)	243, 564
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	3 cut(s)	186, 598, 667
BstMAI	GTCTC	2 cut(s)	215, 244
BstMBI	GATC	3 cut(s)	183, 595, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 457, 587, 590
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	455
BstV1I	GCAGC	5 cut(s)	441, 463, 469, 571, 577
BstV2I	GAAGAC	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	25, 332
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	73, 684
Cfr13I	GGNCC	2 cut(s)	23, 330
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	1 cut(s)	51
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	2 cut(s)	243, 564
DpnI	GATC	3 cut(s)	185, 597, 666
DpnII	GATC	3 cut(s)	183, 595, 664
Eco24I	GRGCYC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	1 cut(s)	54
FaiI	YATR	9 cut(s)	52, 152, 173, 251, 360, 393, 541, 578, 669
FatI	CATG	1 cut(s)	50
Fnu4HI	GCNGC	7 cut(s)	452, 455, 458, 582, 585, 588, 591
FokI	GGATG	1 cut(s)	351
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	7 cut(s)	452, 455, 458, 582, 585, 588, 591
GluI	GCNGC	7 cut(s)	452, 455, 458, 582, 585, 588, 591
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	2 cut(s)	25, 332
Hin1II	CATG	1 cut(s)	54
HindIII	AAGCTT	2 cut(s)	253, 270
HinfI	GANTC	2 cut(s)	141, 674
HphI	GGTGA	1 cut(s)	326
Hpy188I	TCNGA	4 cut(s)	244, 277, 347, 606
Hpy188III	TCNNGA	2 cut(s)	230, 385
HpyAV	CCTTC	3 cut(s)	398, 622, 634
HpyCH4III	ACNGT	2 cut(s)	226, 314
HpyCH4V	TGCA	4 cut(s)	71, 215, 457, 655
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 457, 587, 590
HpyF3I	CTNAG	2 cut(s)	243, 564
Hsp92II	CATG	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	183, 595, 664
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	9 cut(s)	54, 174, 201, 249, 299, 313, 398, 497, 504
Lsp1109I	GCAGC	5 cut(s)	441, 463, 469, 571, 577
LweI	GCATC	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	3 cut(s)	185, 597, 666
MboI	GATC	3 cut(s)	183, 595, 664
MboII	GAAGA	5 cut(s)	17, 187, 313, 329, 537
MfeI	CAATTG	1 cut(s)	650
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	2 cut(s)	639, 650
MnlI	CCTC	7 cut(s)	6, 26, 155, 291, 346, 353, 392
MseI	TTAA	1 cut(s)	371
MspA1I	CMGCKG	3 cut(s)	454, 584, 590
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	22, 457, 587, 590
NdeII	GATC	3 cut(s)	183, 595, 664
NlaIII	CATG	1 cut(s)	54
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	141, 674
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	7 cut(s)	453, 456, 459, 583, 586, 589, 592
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	2 cut(s)	23, 330
PstI	CTGCAG	1 cut(s)	459
PvuII	CAGCTG	1 cut(s)	454
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	7 cut(s)	452, 455, 458, 582, 585, 588, 591
Sau3AI	GATC	3 cut(s)	183, 595, 664
Sau96I	GGNCC	2 cut(s)	23, 330
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	257, 274, 378, 384, 417, 456
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	455
Sse9I	AATT	2 cut(s)	639, 650
SsiI	CCGC	3 cut(s)	582, 588, 593
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	226, 314
TasI	AATT	2 cut(s)	639, 650
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	2 cut(s)	584, 590
TfiI	GAWTC	2 cut(s)	141, 674
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	2 cut(s)	73, 684
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	5 cut(s)	451, 454, 457, 584, 590
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	3 cut(s)	188, 238, 565
TspRI	CASTG	2 cut(s)	73, 684
Van91I	CCANNNNNTGG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.