Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018360

Physical Location & Seq

Genomic Coordinates Forward (+)

35074789 .. 35077445

Gene Structure 2657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG303000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAAGATGACAACCATGGAAATAATAGGCTAAATGGTCCAAATGGAGGAAGCCCTGAAAACCCATGTTTAAACAACAGCACTCCTGCTAGTAGCTGCAACTCCAACATTAATATTCACCACAATCATAATCAAAGTAACAATCACAATCACCACCACCACAGCAGCAATAAAGAACAAGACAGGTTTCTTCCCATTGCGAATGTGGGTCGCATTATGAAGAAAGTGATTCCGGGCAATGGAAAAATCTCGAAAGACGCAAAAGAGACTGTCCAAGAATGTGTGTCCGAGTTCATTAGCTTTGTCACCGGTGAAGCCTCTGATAAATGTCAAAGGGAAAAGAGGAAGACCATTAACGGCGAAGACATCATATGGGCTATCACAACACTAGGCTTTGAGGATTACGTGCACCCTCTAAAATTGTACCTCCAAAAACATAGAGAGCTTGAAGGGGAGAAGCTAAATGTTCCAAAGCAACAAAGATTGGAGCAAAGGTTGCAGCAACAGCAACAACAGCAAGTAGTACAACAAGAACAAGAGCAACAAAGTATACCTAATCCTAATTCGTATAGTGTATATTCATCGACGAGTCTCTTGTCTCAACCGACTTCTTTCATCACTACTCATCATCGTGATCCCGCATTTTCGTTGCCTTTCTCGCCAAGCTCAATTCAAAAACAGCTACAGCCACAAGATCAGATTGATTCAGTGGGGCATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

240

Amino Acids

27.28

Weight (kDa)

6.53

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	51 - 127	2.4e-07	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	63 - 127	6.1e-28	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018360)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24590
malus_domestica	MD15G1134600.v1.1
prunus_persica	Prupe.4G273800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0121991
rosa_laevigata	RLG00000018645
rosa_roxburghii	Rroxscaffold_2G00122090
rosa_rugosa	Rorug02G0235900
rosa_samantha	Rh2BG303000 Rh2CG281600
rosa_wichuraiana	Rw2G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	550
AciI	CCGC	1 cut(s)	639
AclWI	GGATC	1 cut(s)	629
AfaI	GTAC	2 cut(s)	425, 525
AfiI	CCNNNNNNNGG	2 cut(s)	47, 239
AgeI	ACCGGT	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	449, 674
AluBI	AGCT	6 cut(s)	96, 300, 445, 460, 666, 682
AluI	AGCT	6 cut(s)	96, 300, 445, 460, 666, 682
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	3 cut(s)	260, 596, 603
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	629
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	3 cut(s)	96, 165, 499
AseI	ATTAAT	1 cut(s)	111
AsiGI	ACCGGT	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	4 cut(s)	110, 143, 298, 323
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	411
BbsI	GAAGAC	2 cut(s)	353, 369
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	83, 177, 511
BceAI	ACGGC	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	260, 596, 603
BfaI	CTAG	2 cut(s)	90, 389
BfmI	CTRYAG	1 cut(s)	683
BisI	GCNGC	3 cut(s)	97, 166, 500
BlsI	GCNGC	3 cut(s)	98, 167, 501
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	234
BpiI	GAAGAC	2 cut(s)	353, 369
BpuMI	CCSGG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 239
Bse118I	RCCGGY	1 cut(s)	308
Bse3DI	GCAATG	2 cut(s)	195, 244
BseDI	CCNNGG	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	47, 239
BseMI	GCAATG	2 cut(s)	195, 244
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	83, 177, 511
BshTI	ACCGGT	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	233, 309
BslI	CCNNNNNNNGG	2 cut(s)	47, 239
BsmAI	GTCTC	3 cut(s)	260, 596, 603
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	634, 694
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	1 cut(s)	639
BspPI	GGATC	1 cut(s)	629
BsrDI	GCAATG	2 cut(s)	195, 244
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	634, 694
BssNAI	GTATAC	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	16
Bst1107I	GTATAC	1 cut(s)	551
Bst4CI	ACNGT	1 cut(s)	271
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstBAI	YACGTR	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	16
BstKTI	GATC	2 cut(s)	637, 697
BstMAI	GTCTC	3 cut(s)	260, 596, 603
BstMBI	GATC	2 cut(s)	634, 694
BstMWI	GCNNNNNNNGC	4 cut(s)	496, 505, 514, 658
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	683
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	3 cut(s)	83, 177, 511
BstV2I	GAAGAC	2 cut(s)	353, 369
BstZ17I	GTATAC	1 cut(s)	551
BtgI	CCRYGG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	714
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	424, 524
CspAI	ACCGGT	1 cut(s)	308
CviAII	CATG	2 cut(s)	17, 66
CviQI	GTAC	2 cut(s)	424, 524
DpnI	GATC	2 cut(s)	636, 696
DpnII	GATC	2 cut(s)	634, 694
DraI	TTTAAA	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	20, 69
FatI	CATG	2 cut(s)	16, 65
FauI	CCCGC	1 cut(s)	646
FauNDI	CATATG	1 cut(s)	371
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	3 cut(s)	97, 166, 500
Fsp4HI	GCNGC	3 cut(s)	97, 166, 500
FspBI	CTAG	2 cut(s)	90, 389
GluI	GCNGC	3 cut(s)	97, 166, 500
HapII	CCGG	2 cut(s)	233, 309
HgaI	GACGC	1 cut(s)	266
Hin1II	CATG	2 cut(s)	20, 69
HinfI	GANTC	3 cut(s)	229, 589, 704
HpaII	CCGG	2 cut(s)	233, 309
HphI	GGTGA	4 cut(s)	110, 143, 298, 323
Hpy166II	GTNNAC	2 cut(s)	409, 551
Hpy188I	TCNGA	3 cut(s)	289, 322, 699
Hpy188III	TCNNGA	2 cut(s)	250, 632
Hpy8I	GTNNAC	2 cut(s)	409, 551
Hpy99I	CGWCG	1 cut(s)	589
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	99, 409, 499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	496, 505, 514, 658
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	20, 69
Kzo9I	GATC	2 cut(s)	634, 694
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	5 cut(s)	69, 99, 169, 246, 322
Lsp1109I	GCAGC	3 cut(s)	83, 177, 511
MaeI	CTAG	2 cut(s)	90, 389
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	137, 304
MalI	GATC	2 cut(s)	636, 696
MboI	GATC	2 cut(s)	634, 694
MboII	GAAGA	5 cut(s)	17, 182, 232, 358, 374
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	3 cut(s)	419, 562, 669
MlyI	GAGTC	1 cut(s)	598
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	41, 328, 336, 391, 423, 437
MseI	TTAA	3 cut(s)	71, 111, 354
MslI	CAYNNNNRTG	1 cut(s)	630
MspI	CCGG	2 cut(s)	233, 309
MspR9I	CCNGG	1 cut(s)	234
MssI	GTTTAAAC	1 cut(s)	72
MwoI	GCNNNNNNNGC	4 cut(s)	496, 505, 514, 658
NciI	CCSGG	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	16
NdeI	CATATG	1 cut(s)	371
NdeII	GATC	2 cut(s)	634, 694
NlaIII	CATG	2 cut(s)	20, 69
NmuCI	GTSAC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	229, 704
PinAI	ACCGGT	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	98, 167, 501
PleI	GAGTC	1 cut(s)	597
PmeI	GTTTAAAC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	597
Ppu21I	YACGTR	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	38
RsaI	GTAC	2 cut(s)	425, 525
RsaNI	GTAC	2 cut(s)	424, 524
RseI	CAYNNNNRTG	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	71, 111, 354
SatI	GCNGC	3 cut(s)	97, 166, 500
Sau3AI	GATC	2 cut(s)	634, 694
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	598
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	411
SfcI	CTRYAG	1 cut(s)	683
SgrAI	CRCCGGYG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	630
Sse9I	AATT	3 cut(s)	419, 562, 669
SsiI	CCGC	1 cut(s)	639
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	2 cut(s)	90, 389
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	2 cut(s)	251, 584
TasI	AATT	3 cut(s)	419, 562, 669
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	2 cut(s)	229, 704
Tru1I	TTAA	3 cut(s)	71, 111, 354
Tru9I	TTAA	3 cut(s)	71, 111, 354
TscAI	CASTG	1 cut(s)	714
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	3 cut(s)	96, 165, 499
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	4 cut(s)	233, 283, 570, 604
TspRI	CASTG	1 cut(s)	714
VneI	GTGCAC	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	38
VspI	ATTAAT	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	550
XspI	CTAG	2 cut(s)	90, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.