MD15G1163400.v1.1

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014627
Physical Location & Seq
Forward (+)
12324066 .. 12326545
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1163400.v1.1.491

Sequence Viewer

Length: 606 bp
ATGAGCAAGAGGAAGCTTCCCTCTGATGATCTCAGCCCTCCGTCTTTCTCTCCTTGTTCTTCGGGTACCATGCCATGTTCTTCTGGAATGGATTTATTAACACAAGAGCATCATCCAAGCCTTGGGCGATCAATGTTCCTTAAACGCTCACATCATCACTATGCGCATCAATACTCTCGACGTAACTCAGGCAGTCTTGCTAACAAATCAACTTCTCGTGGAAAAGGAGTGCCTTTGCGTGACGATACACTCTCCTATAAGTTGGCTACTCAATCCAGCTTCGAGTCCAGACGTCATTCAGAAACCAAGGAAAAGCCTTTTATTCGGCCAGCCAGAATTAGATCTGGTTTCTTGGCAACGGATGCTGTATCATCGGATCCAGGGAAGATGGTATGTGGGATTTGTGACAAGCTGTTGAGGCGTAAACCTTTCTTTCTCGGTAGCACGCTGTCTTCGACTGAAGTCTCTGTTGTTGCAGTTTTAGTTTGCGGCCATCTTTACCATGCAGATTGTTTGGAGCAGAAAACAAGTTTTGAAGATAGACGCGACCCCCACTGCCCATTGTGTGCAGGATTATTGCCCAAGGTTGAAGATTCAAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4 zf-RING_UBOX

Protein Analysis

202

Amino Acids

22.31

Weight (kDa)

9.28

Isoelectric Point (pI)

71.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014627)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02200
malus_domestica MD02G1020600.v1.1 MD15G1163400.v1.1
prunus_persica Prupe.7G250900_v2.0.a1
pyrus_communis pycom15g14700
rosa_chinensis RchiOBHm_Chr2g0087291
rosa_laevigata RLG00000015851
rosa_multiflora Rmu_sc0003367.1_g000018
rosa_roxburghii Rroxscaffold_2G00153740
rosa_rugosa Rorug01G0473700 Rorug01G0473700 Rorug01G0473700
rosa_samantha Rh2AG027600 Rh2BG026700 Rh2CG027800 Rh2DG027400
rosa_wichuraiana Rw2G002160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 295
Acc16I TGCGCA 1 cut(s) 165
Acc65I GGTACC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 122
AccII CGCG 1 cut(s) 546
AciI CCGC 1 cut(s) 489
AclWI GGATC 2 cut(s) 371, 384
AcoI YGGCCR 2 cut(s) 326, 490
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 292
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 3 cut(s) 536, 590, 597
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 3 cut(s) 16, 279, 412
AluI AGCT 3 cut(s) 16, 279, 412
Alw26I GTCTC 1 cut(s) 469
AlwI GGATC 2 cut(s) 371, 384
AoxI GGCC 2 cut(s) 326, 490
Asp718I GGTACC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 166
BamHI GGATCC 1 cut(s) 376
BanI GGYRCC 1 cut(s) 65
BauI CACGAG 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 444
BccI CCATC 2 cut(s) 382, 501
BciT130I CCWGG 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 469
BglII AGATCT 1 cut(s) 341
BisI GCNGC 1 cut(s) 490
BlsI GCNGC 1 cut(s) 491
Bme1390I CCNGG 1 cut(s) 381
BmiI GGNNCC 2 cut(s) 67, 378
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 3 cut(s) 118, 175, 352
BoxI GACNNNNGTC 1 cut(s) 461
BpiI GAAGAC 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 292
BsaJI CCNNGG 4 cut(s) 121, 306, 380, 582
Bsc4I CCNNNNNNNGG 1 cut(s) 122
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 4 cut(s) 121, 306, 380, 582
BseGI GGATG 2 cut(s) 112, 367
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMII CTCAG 2 cut(s) 46, 201
BsgI GTGCAG 1 cut(s) 588
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 2 cut(s) 328, 492
BshNI GGYRCC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 469
BsnI GGCC 2 cut(s) 328, 492
Bsp143I GATC 4 cut(s) 28, 128, 341, 376
BspACI CCGC 1 cut(s) 489
BspANI GGCC 2 cut(s) 328, 492
BspCNI CTCAG 2 cut(s) 45, 200
BspFNI CGCG 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 67, 378
BspPI GGATC 2 cut(s) 371, 384
BspT107I GGYRCC 1 cut(s) 65
BssECI CCNNGG 4 cut(s) 121, 306, 380, 582
BssMI GATC 4 cut(s) 28, 128, 341, 376
BssNI GRCGYC 1 cut(s) 292
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 3 cut(s) 121, 306, 582
Bst2BI CACGAG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 381
BstACI GRCGYC 1 cut(s) 292
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 330, 446
BstDEI CTNAG 2 cut(s) 32, 187
BstF5I GGATG 2 cut(s) 112, 367
BstFNI CGCG 1 cut(s) 546
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 4 cut(s) 31, 131, 344, 379
BstMAI GTCTC 1 cut(s) 469
BstMBI GATC 4 cut(s) 28, 128, 341, 376
BstMWI GCNNNNNNNGC 2 cut(s) 362, 418
BstNI CCWGG 1 cut(s) 381
BstPAI GACNNNNGTC 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 379
BstUI CGCG 1 cut(s) 546
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 2 cut(s) 341, 376
BstYI RGATCY 2 cut(s) 341, 376
BsuRI GGCC 2 cut(s) 328, 492
BtsCI GGATG 2 cut(s) 112, 367
BtsI GCAGTG 1 cut(s) 553
BtsIMutI CAGTG 1 cut(s) 553
Cac8I GCNNGC 2 cut(s) 330, 446
CfoI GCGC 1 cut(s) 166
CseI GACGC 1 cut(s) 552
Csp6I GTAC 1 cut(s) 66
CviAII CATG 3 cut(s) 70, 75, 503
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 2 cut(s) 32, 187
DpnI GATC 4 cut(s) 30, 130, 343, 378
DpnII GATC 4 cut(s) 28, 128, 341, 376
EaeI YGGCCR 2 cut(s) 326, 490
Eco130I CCWWGG 3 cut(s) 121, 306, 582
Eco57I CTGAAG 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 3 cut(s) 121, 306, 582
ErhI CCWWGG 3 cut(s) 121, 306, 582
FaeI CATG 3 cut(s) 73, 78, 506
FaiI YATR 6 cut(s) 71, 76, 162, 258, 394, 504
FatI CATG 3 cut(s) 69, 74, 502
Fnu4HI GCNGC 1 cut(s) 490
FokI GGATG 2 cut(s) 99, 374
Fsp4HI GCNGC 1 cut(s) 490
FspAI RTGCGCAY 1 cut(s) 165
FspI TGCGCA 1 cut(s) 165
GlaI GCGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 490
HaeIII GGCC 2 cut(s) 328, 492
HgaI GACGC 1 cut(s) 552
HhaI GCGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 292
Hin1II CATG 3 cut(s) 73, 78, 506
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 284, 593
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 3 cut(s) 25, 301, 376
Hpy188III TCNNGA 4 cut(s) 84, 177, 288, 597
Hpy8I GTNNAC 1 cut(s) 425
Hpy99I CGWCG 1 cut(s) 183
HpyCH4IV ACGT 2 cut(s) 181, 292
HpyCH4V TGCA 3 cut(s) 476, 506, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 418
HpyF3I CTNAG 2 cut(s) 32, 187
HpySE526I ACGT 2 cut(s) 181, 292
Hsp92I GRCGYC 1 cut(s) 292
Hsp92II CATG 3 cut(s) 73, 78, 506
HspAI GCGC 1 cut(s) 164
KpnI GGTACC 1 cut(s) 69
Kzo9I GATC 4 cut(s) 28, 128, 341, 376
LmnI GCTCC 1 cut(s) 517
LweI GCATC 3 cut(s) 118, 175, 352
MaeII ACGT 2 cut(s) 181, 292
MaeIII GTNAC 3 cut(s) 182, 239, 404
MalI GATC 4 cut(s) 30, 130, 343, 378
MboI GATC 4 cut(s) 28, 128, 341, 376
MboII GAAGA 6 cut(s) 51, 72, 397, 444, 548, 602
MflI RGATCY 2 cut(s) 341, 376
MluCI AATT 1 cut(s) 336
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 4 cut(s) 3, 31, 48, 411
MseI TTAA 2 cut(s) 98, 141
MslI CAYNNNNRTG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 381
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 2 cut(s) 362, 418
NdeII GATC 4 cut(s) 28, 128, 341, 376
NlaIII CATG 3 cut(s) 73, 78, 506
NlaIV GGNNCC 2 cut(s) 67, 378
NmuCI GTSAC 2 cut(s) 239, 404
NsbI TGCGCA 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 452
PfeI GAWTC 1 cut(s) 593
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 1 cut(s) 491
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 2 cut(s) 67, 378
PsuI RGATCY 2 cut(s) 341, 376
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 2 cut(s) 98, 141
SatI GCNGC 1 cut(s) 490
Sau3AI GATC 4 cut(s) 28, 128, 341, 376
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 381
SetI ASST 7 cut(s) 18, 184, 281, 295, 414, 430, 588
SfaNI GCATC 3 cut(s) 118, 175, 352
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 1 cut(s) 336
SsiI CCGC 1 cut(s) 489
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 3 cut(s) 121, 306, 582
TaiI ACGT 2 cut(s) 184, 295
TaqI TCGA 3 cut(s) 178, 282, 455
TasI AATT 1 cut(s) 336
TauI GCSGC 1 cut(s) 492
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 2 cut(s) 98, 141
Tru9I TTAA 2 cut(s) 98, 141
TscAI CASTG 1 cut(s) 560
TseFI GTSAC 2 cut(s) 239, 404
Tsp45I GTSAC 2 cut(s) 239, 404
TspGWI ACGGA 2 cut(s) 30, 374
TspRI CASTG 1 cut(s) 560
Van91I CCANNNNNTGG 1 cut(s) 122
ZraI GACGTC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.