Prupe.7G250900_v2.0.a1

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014627
Physical Location & Seq
Forward (+)
21204437 .. 21207101
2665 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G250900.1

Sequence Viewer

Length: 741 bp
ATGGGCAAGAGGAAGCTGCCCTCTGATCACAGCCAGACCCACCCTCCCCCTTTCTCTCCTCATCCTTCGGATCTTGCAGACATCATGCCATGTTCTTCGGGAATGGAATTACTGTCACAAGAGAAACCTTTGCATTCTGTTGATTCTGGCGAACAACTAAAGTCCCTGTCATCTGTACTGGACTCTACGGATAGTTCTTTGAAGCTACTAAACGCCCACCCTTCTGTTGCACAGCAGCATCATCCAAGCCTTGGCCGATCAACCTTCTTTAAACGCTCACGTCATCACTATGCCCATCAATACTCTCGCCGTAACTCAGGCAATCTTGCTAACACATCAACTTCTCGTGGAAAAGGAGTACCTTTACGTGATGATAAGCTCTCTTATAAGTTGGCTACTCAAAGCAACTCCGAGTCCAGACGTCATTCAGAAATTAGGGAAAACCCCTTTCTTCGGCAACCCAGAATTAGGTCTAGTTACTTGACAACCGATGCTGCATCACCTGATCCGGGGAAGATGGTATGTGAGATTTGTGAGAAGCTGTTGAGGCGTAAACCTTTCTTACTTGGTAGCACGCTGTCTTCCACTGAAGTCTCTGTTGTGGCGGTTTTAGGTTGTGGCCATGCTTATCATGCAGATTGTTTGGAGCAGAAAACAAGTTTTGAAGATAGACGCGACCCGCACTGTCCGTTGTGTCTTGGATTGTTGCCCAAGGTTGAAGATTCAAGAGAGCAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4 zf-RING_UBOX

Protein Analysis

247

Amino Acids

27.37

Weight (kDa)

8.97

Isoelectric Point (pI)

68.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014627)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02200
malus_domestica MD02G1020600.v1.1 MD15G1163400.v1.1
prunus_persica Prupe.7G250900_v2.0.a1
pyrus_communis pycom15g14700
rosa_chinensis RchiOBHm_Chr2g0087291
rosa_laevigata RLG00000015851
rosa_multiflora Rmu_sc0003367.1_g000018
rosa_roxburghii Rroxscaffold_2G00153740
rosa_rugosa Rorug01G0473700 Rorug01G0473700 Rorug01G0473700
rosa_samantha Rh2AG027600 Rh2BG026700 Rh2CG027800 Rh2DG027400
rosa_wichuraiana Rw2G002160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AatII GACGTC 1 cut(s) 424
Acc36I ACCTGC 1 cut(s) 724
AccB7I CCANNNNNTGG 1 cut(s) 251
AccII CGCG 1 cut(s) 675
AciI CCGC 2 cut(s) 605, 680
AclWI GGATC 2 cut(s) 78, 500
AcoI YGGCCR 2 cut(s) 253, 619
AcuI CTGAAG 1 cut(s) 609
AcyI GRCGYC 1 cut(s) 421
AfaI GTAC 2 cut(s) 177, 360
AfiI CCNNNNNNNGG 4 cut(s) 251, 453, 468, 509
AgsI TTSAA 4 cut(s) 202, 665, 719, 726
AjiI CACGTC 1 cut(s) 281
AluBI AGCT 4 cut(s) 16, 205, 379, 541
AluI AGCT 4 cut(s) 16, 205, 379, 541
Alw26I GTCTC 1 cut(s) 598
AlwI GGATC 2 cut(s) 78, 500
AoxI GGCC 2 cut(s) 253, 619
ApeKI GCWGC 3 cut(s) 16, 235, 494
AsuC2I CCSGG 1 cut(s) 510
AsuHPI GGTGA 1 cut(s) 492
BalI TGGCCA 1 cut(s) 621
BauI CACGAG 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 573
BbvI GCAGC 3 cut(s) 3, 247, 481
BccI CCATC 2 cut(s) 303, 511
BceAI ACGGC 1 cut(s) 294
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 510
BcoDI GTCTC 1 cut(s) 598
BfaI CTAG 2 cut(s) 474, 739
BfuAI ACCTGC 1 cut(s) 724
BisI GCNGC 3 cut(s) 17, 236, 495
BlsI GCNGC 3 cut(s) 18, 237, 496
Bme1390I CCNGG 1 cut(s) 510
BmgBI CACGTC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 3 cut(s) 247, 481, 506
BpiI GAAGAC 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 510
BsaAI YACGTR 1 cut(s) 368
BsaHI GRCGYC 1 cut(s) 421
BsaJI CCNNGG 3 cut(s) 250, 509, 711
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 453, 468, 509
Bse1I ACTGG 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 250, 509, 711
BseGI GGATG 2 cut(s) 61, 241
BseLI CCNNNNNNNGG 4 cut(s) 251, 453, 468, 509
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 3 cut(s) 3, 247, 481
Bsh1236I CGCG 1 cut(s) 675
BshFI GGCC 2 cut(s) 255, 621
BsiSI CCGG 1 cut(s) 509
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 4 cut(s) 251, 453, 468, 509
BsmAI GTCTC 1 cut(s) 598
BsmFI GGGAC 1 cut(s) 148
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 2 cut(s) 255, 621
Bsp143I GATC 4 cut(s) 25, 70, 257, 505
BspACI CCGC 2 cut(s) 605, 680
BspANI GGCC 2 cut(s) 255, 621
BspCNI CTCAG 1 cut(s) 329
BspFNI CGCG 1 cut(s) 675
BspMI ACCTGC 1 cut(s) 724
BspPI GGATC 2 cut(s) 78, 500
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 3 cut(s) 250, 509, 711
BssMI GATC 4 cut(s) 25, 70, 257, 505
BssNI GRCGYC 1 cut(s) 421
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 2 cut(s) 250, 711
Bst2BI CACGAG 1 cut(s) 345
Bst4CI ACNGT 2 cut(s) 114, 686
BstACI GRCGYC 1 cut(s) 421
BstBAI YACGTR 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 575
BstDEI CTNAG 1 cut(s) 316
BstF5I GGATG 2 cut(s) 61, 241
BstFNI CGCG 1 cut(s) 675
BstKTI GATC 4 cut(s) 28, 73, 260, 508
BstMAI GTCTC 1 cut(s) 598
BstMBI GATC 4 cut(s) 25, 70, 257, 505
BstMWI GCNNNNNNNGC 2 cut(s) 547, 632
BstSCI CCNGG 1 cut(s) 508
BstUI CGCG 1 cut(s) 675
BstV1I GCAGC 3 cut(s) 3, 247, 481
BstV2I GAAGAC 1 cut(s) 573
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 2 cut(s) 255, 621
BtrI CACGTC 1 cut(s) 281
BtsCI GGATG 2 cut(s) 61, 241
BtsIMutI CAGTG 2 cut(s) 585, 682
BveI ACCTGC 1 cut(s) 724
Cac8I GCNNGC 1 cut(s) 575
CseI GACGC 1 cut(s) 681
Csp6I GTAC 2 cut(s) 176, 359
CviAII CATG 4 cut(s) 85, 90, 623, 632
CviJI RGCY 9 cut(s) 16, 33, 205, 249, 255, 379, 395, 541, 621
CviKI_1 RGCY 9 cut(s) 16, 33, 205, 249, 255, 379, 395, 541, 621
CviQI GTAC 2 cut(s) 176, 359
DdeI CTNAG 1 cut(s) 316
DpnI GATC 4 cut(s) 27, 72, 259, 507
DpnII GATC 4 cut(s) 25, 70, 257, 505
DraI TTTAAA 1 cut(s) 271
EaeI YGGCCR 2 cut(s) 253, 619
Eco130I CCWWGG 2 cut(s) 250, 711
Eco57I CTGAAG 1 cut(s) 609
EcoT14I CCWWGG 2 cut(s) 250, 711
ErhI CCWWGG 2 cut(s) 250, 711
FaeI CATG 4 cut(s) 88, 93, 626, 635
FaiI YATR 7 cut(s) 86, 91, 291, 387, 523, 624, 633
FaqI GGGAC 1 cut(s) 148
FatI CATG 4 cut(s) 84, 89, 622, 631
FauI CCCGC 1 cut(s) 687
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 3 cut(s) 17, 236, 495
FokI GGATG 2 cut(s) 48, 228
Fsp4HI GCNGC 3 cut(s) 17, 236, 495
FspBI CTAG 2 cut(s) 474, 739
GluI GCNGC 3 cut(s) 17, 236, 495
HaeIII GGCC 2 cut(s) 255, 621
HapII CCGG 1 cut(s) 509
HgaI GACGC 1 cut(s) 681
Hin1I GRCGYC 1 cut(s) 421
Hin1II CATG 4 cut(s) 88, 93, 626, 635
HinfI GANTC 4 cut(s) 143, 182, 413, 722
HpaII CCGG 1 cut(s) 509
HphI GGTGA 1 cut(s) 492
Hpy166II GTNNAC 1 cut(s) 554
Hpy188I TCNGA 4 cut(s) 25, 70, 412, 430
Hpy188III TCNNGA 3 cut(s) 99, 417, 726
Hpy8I GTNNAC 1 cut(s) 554
HpyAV CCTTC 3 cut(s) 75, 231, 274
HpyCH4III ACNGT 2 cut(s) 114, 686
HpyCH4IV ACGT 3 cut(s) 280, 367, 421
HpyCH4V TGCA 5 cut(s) 77, 133, 230, 497, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 547, 632
HpyF3I CTNAG 1 cut(s) 316
HpySE526I ACGT 3 cut(s) 280, 367, 421
Hsp92I GRCGYC 1 cut(s) 421
Hsp92II CATG 4 cut(s) 88, 93, 626, 635
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 4 cut(s) 25, 70, 257, 505
LmnI GCTCC 1 cut(s) 646
Lsp1109I GCAGC 3 cut(s) 3, 247, 481
LweI GCATC 3 cut(s) 247, 481, 506
MaeI CTAG 2 cut(s) 474, 739
MaeII ACGT 3 cut(s) 280, 367, 421
MaeIII GTNAC 3 cut(s) 114, 311, 476
MalI GATC 4 cut(s) 27, 72, 259, 507
MboI GATC 4 cut(s) 25, 70, 257, 505
MboII GAAGA 6 cut(s) 87, 443, 526, 573, 677, 731
MflI RGATCY 1 cut(s) 70
MlsI TGGCCA 1 cut(s) 621
MluCI AATT 3 cut(s) 107, 432, 465
MluNI TGGCCA 1 cut(s) 621
MlyI GAGTC 2 cut(s) 176, 422
MnlI CCTC 5 cut(s) 3, 31, 54, 69, 540
Mox20I TGGCCA 1 cut(s) 621
MscI TGGCCA 1 cut(s) 621
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 621
MspI CCGG 1 cut(s) 509
MspR9I CCNGG 1 cut(s) 510
Mva1269I GAATGC 1 cut(s) 133
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 2 cut(s) 547, 632
NciI CCSGG 1 cut(s) 510
NdeII GATC 4 cut(s) 25, 70, 257, 505
NlaIII CATG 4 cut(s) 88, 93, 626, 635
NmuCI GTSAC 1 cut(s) 114
PctI GAATGC 1 cut(s) 133
PfeI GAWTC 2 cut(s) 143, 722
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 3 cut(s) 18, 237, 496
PleI GAGTC 2 cut(s) 176, 421
PpsI GAGTC 2 cut(s) 176, 421
Ppu21I YACGTR 1 cut(s) 368
PsiI TTATAA 1 cut(s) 387
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 2 cut(s) 177, 360
RsaNI GTAC 2 cut(s) 176, 359
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 17, 236, 495
Sau3AI GATC 4 cut(s) 25, 70, 257, 505
SchI GAGTC 2 cut(s) 176, 422
ScrFI CCNGG 1 cut(s) 510
SfaNI GCATC 3 cut(s) 247, 481, 506
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 3 cut(s) 107, 432, 465
SsiI CCGC 2 cut(s) 605, 680
SspMI CTAG 2 cut(s) 474, 739
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 2 cut(s) 250, 711
TaaI ACNGT 2 cut(s) 114, 686
TaiI ACGT 3 cut(s) 283, 370, 424
TasI AATT 3 cut(s) 107, 432, 465
TatI WGTACW 1 cut(s) 175
TfiI GAWTC 2 cut(s) 143, 722
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 2 cut(s) 592, 689
TseFI GTSAC 1 cut(s) 114
TseI GCWGC 3 cut(s) 16, 235, 494
Tsp45I GTSAC 1 cut(s) 114
TspGWI ACGGA 2 cut(s) 203, 678
TspRI CASTG 2 cut(s) 592, 689
Van91I CCANNNNNTGG 1 cut(s) 251
XspI CTAG 2 cut(s) 474, 739
ZraI GACGTC 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.