RchiOBHm_Chr2g0087291

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014627
Physical Location & Seq
Forward (+)
2094847 .. 2097407
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46274

Sequence Viewer

Length: 723 bp
ATGGGGAAGAGGAGGCCACGCTCTGATGATCACAGCCCACCCTTTTCTCATCCTCCTCCTTCGGACATCATTTCATGTTCTTCAGGAATGGAATTGCTATCAGAAGAGAAACATTTGCACTCGGTTGATTCTGGTAAACAACTAAAGCCTCTGTCATCAGTACTGGATACTACCGGTACTTCTTTGAAGCTACTACATGCCCACCCTTCTGCTGCACAACATCATCAGAGCCTTGGCCGATCAACATTCTTTAAACGTTCACGTCATTACTATGCCCATCAATACTCTCGGCGTAACTCTGGCAGTGTTGCCAATGCATCAACTTCTCGTGGAAAAGGGACTCCTTCACGTGAAGAGAAGCTCTCTTATAAGTTGGCTACTCAATGCAGCTCTGACTCTGGACATCACTCAGAAGTGAAGGAAAAACCCTTTTTTCGGCCAGCCAGAATAAGGTCTAGTTACTTGGTAATGGATGCTGCCTCAGCTGATCCTATGAAGATGTTATGTGGGATTTGTCAGAAGCCATTGAGGCGCAAACCTTTTTTTCTTGGGATCACGCTGTCTTCTACTGAAGTCTCTGTTGTGGCAGTTTTAGTTTGCGGCCATGTTTACCATGCTGATTGTTTGGAGCAGAAAACAAGTTTTGAAGACAGACGTGACCCTCCCTGTCCTTTGTGTGTTGGGTTGTTGCCCAAGATCGAAGATTCTCGAGGGCAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4 zf-RING_UBOX

Protein Analysis

240

Amino Acids

26.57

Weight (kDa)

9.39

Isoelectric Point (pI)

61.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 169 - 226 3.8e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014627)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02200
malus_domestica MD02G1020600.v1.1 MD15G1163400.v1.1
prunus_persica Prupe.7G250900_v2.0.a1
pyrus_communis pycom15g14700
rosa_chinensis RchiOBHm_Chr2g0087291
rosa_laevigata RLG00000015851
rosa_multiflora Rmu_sc0003367.1_g000018
rosa_roxburghii Rroxscaffold_2G00153740
rosa_rugosa Rorug01G0473700 Rorug01G0473700 Rorug01G0473700
rosa_samantha Rh2AG027600 Rh2BG026700 Rh2CG027800 Rh2DG027400
rosa_wichuraiana Rw2G002160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
Acc36I ACCTGC 1 cut(s) 706
AciI CCGC 1 cut(s) 600
AclI AACGTT 1 cut(s) 256
AclWI GGATC 2 cut(s) 482, 560
AcoI YGGCCR 3 cut(s) 235, 437, 601
AcuI CTGAAG 2 cut(s) 66, 591
AcvI CACGTG 1 cut(s) 350
AfaI GTAC 2 cut(s) 162, 178
AfiI CCNNNNNNNGG 2 cut(s) 435, 450
AgeI ACCGGT 1 cut(s) 173
AgsI TTSAA 2 cut(s) 187, 647
AjiI CACGTC 2 cut(s) 263, 656
AluBI AGCT 4 cut(s) 190, 361, 390, 485
AluI AGCT 4 cut(s) 190, 361, 390, 485
Alw26I GTCTC 1 cut(s) 580
AlwI GGATC 2 cut(s) 482, 560
Ama87I CYCGRG 1 cut(s) 708
AoxI GGCC 4 cut(s) 14, 235, 437, 601
ApeKI GCWGC 3 cut(s) 212, 387, 476
AsiGI ACCGGT 1 cut(s) 173
AspLEI GCGC 1 cut(s) 534
AvaI CYCGRG 1 cut(s) 708
BauI CACGAG 1 cut(s) 327
BbrPI CACGTG 1 cut(s) 350
BbsI GAAGAC 2 cut(s) 555, 654
BbvCI CCTCAGC 1 cut(s) 481
BbvI GCAGC 3 cut(s) 199, 399, 463
BccI CCATC 1 cut(s) 285
BciVI GTATCC 1 cut(s) 160
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 580
BfaI CTAG 1 cut(s) 456
BfuAI ACCTGC 1 cut(s) 706
BfuI GTATCC 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 529
BisI GCNGC 4 cut(s) 213, 388, 477, 601
BlsI GCNGC 4 cut(s) 214, 389, 478, 602
BmcAI AGTACT 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 708
BmgBI CACGTC 2 cut(s) 263, 656
BmsI GCATC 2 cut(s) 326, 463
BpiI GAAGAC 2 cut(s) 555, 654
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu10I CCTNAGC 1 cut(s) 481
BsaAI YACGTR 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 232
BsaWI WCCGGW 1 cut(s) 173
Bsc4I CCNNNNNNNGG 2 cut(s) 435, 450
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 2 cut(s) 49, 478
BseLI CCNNNNNNNGG 2 cut(s) 435, 450
BseMII CTCAG 2 cut(s) 423, 495
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 25, 45
BseXI GCAGC 3 cut(s) 199, 399, 463
BsgI GTGCAG 1 cut(s) 198
BshFI GGCC 4 cut(s) 16, 237, 439, 603
BshTI ACCGGT 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 708
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 2 cut(s) 435, 450
BsmAI GTCTC 1 cut(s) 580
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 4 cut(s) 16, 237, 439, 603
BsoBI CYCGRG 1 cut(s) 708
Bsp143I GATC 5 cut(s) 28, 239, 487, 552, 696
BspACI CCGC 1 cut(s) 600
BspANI GGCC 4 cut(s) 16, 237, 439, 603
BspCNI CTCAG 2 cut(s) 422, 494
BspMI ACCTGC 1 cut(s) 706
BspPI GGATC 2 cut(s) 482, 560
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 5 cut(s) 28, 239, 487, 552, 696
BssSI CACGAG 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 327
Bst6I CTCTTC 3 cut(s) 2, 99, 348
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 2 cut(s) 409, 481
BstF5I GGATG 2 cut(s) 49, 478
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 5 cut(s) 31, 242, 490, 555, 699
BstMAI GTCTC 1 cut(s) 580
BstMBI GATC 5 cut(s) 28, 239, 487, 552, 696
BstMWI GCNNNNNNNGC 2 cut(s) 482, 529
BstNSI RCATGY 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 199, 399, 463
BstV2I GAAGAC 2 cut(s) 555, 654
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 4 cut(s) 16, 237, 439, 603
BtrI CACGTC 2 cut(s) 263, 656
BtsCI GGATG 2 cut(s) 49, 478
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 310
BveI ACCTGC 1 cut(s) 706
Cac8I GCNNGC 1 cut(s) 441
CfoI GCGC 1 cut(s) 534
Cfr10I RCCGGY 1 cut(s) 173
Csp6I GTAC 2 cut(s) 161, 177
CspAI ACCGGT 1 cut(s) 173
CviAII CATG 4 cut(s) 75, 197, 605, 614
CviQI GTAC 2 cut(s) 161, 177
DdeI CTNAG 2 cut(s) 409, 481
DpnI GATC 5 cut(s) 30, 241, 489, 554, 698
DpnII GATC 5 cut(s) 28, 239, 487, 552, 696
DraI TTTAAA 1 cut(s) 253
EaeI YGGCCR 3 cut(s) 235, 437, 601
Eam1104I CTCTTC 3 cut(s) 2, 99, 348
EarI CTCTTC 3 cut(s) 2, 99, 348
Eco130I CCWWGG 1 cut(s) 232
Eco57I CTGAAG 2 cut(s) 66, 591
Eco72I CACGTG 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 708
EcoT14I CCWWGG 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 4 cut(s) 78, 200, 608, 617
FaiI YATR 8 cut(s) 76, 198, 273, 369, 494, 505, 606, 615
FaqI GGGAC 1 cut(s) 352
FatI CATG 4 cut(s) 74, 196, 604, 613
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 4 cut(s) 213, 388, 477, 601
FokI GGATG 2 cut(s) 36, 485
Fsp4HI GCNGC 4 cut(s) 213, 388, 477, 601
FspBI CTAG 1 cut(s) 456
GlaI GCGC 1 cut(s) 533
GluI GCNGC 4 cut(s) 213, 388, 477, 601
HaeIII GGCC 4 cut(s) 16, 237, 439, 603
HapII CCGG 1 cut(s) 174
HhaI GCGC 1 cut(s) 534
Hin1II CATG 4 cut(s) 78, 200, 608, 617
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HinfI GANTC 4 cut(s) 128, 340, 395, 704
HpaII CCGG 1 cut(s) 174
Hpy166II GTNNAC 3 cut(s) 137, 260, 610
Hpy188I TCNGA 7 cut(s) 25, 64, 103, 228, 394, 412, 519
Hpy188III TCNNGA 3 cut(s) 84, 399, 708
Hpy8I GTNNAC 3 cut(s) 137, 260, 610
HpyAV CCTTC 4 cut(s) 69, 216, 354, 412
HpyCH4IV ACGT 4 cut(s) 256, 262, 349, 655
HpyCH4V TGCA 4 cut(s) 118, 215, 317, 387
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 529
HpyF3I CTNAG 2 cut(s) 409, 481
HpySE526I ACGT 4 cut(s) 256, 262, 349, 655
Hsp92II CATG 4 cut(s) 78, 200, 608, 617
HspAI GCGC 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 5 cut(s) 28, 239, 487, 552, 696
LmnI GCTCC 1 cut(s) 628
Lsp1109I GCAGC 3 cut(s) 199, 399, 463
LweI GCATC 2 cut(s) 326, 463
MaeI CTAG 1 cut(s) 456
MaeII ACGT 4 cut(s) 256, 262, 349, 655
MaeIII GTNAC 3 cut(s) 293, 458, 656
MalI GATC 5 cut(s) 30, 241, 489, 554, 698
MboI GATC 5 cut(s) 28, 239, 487, 552, 696
MboII GAAGA 8 cut(s) 19, 72, 116, 365, 508, 555, 659, 713
MluCI AATT 1 cut(s) 92
MlyI GAGTC 2 cut(s) 334, 389
MnlI CCTC 9 cut(s) 3, 6, 63, 66, 159, 490, 522, 672, 704
Mph1103I ATGCAT 1 cut(s) 319
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 482, 529
NdeII GATC 5 cut(s) 28, 239, 487, 552, 696
NlaIII CATG 4 cut(s) 78, 200, 608, 617
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 656
NsiI ATGCAT 1 cut(s) 319
NspI RCATGY 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 708
PfeI GAWTC 2 cut(s) 128, 704
PinAI ACCGGT 1 cut(s) 173
PkrI GCNGC 4 cut(s) 214, 389, 478, 602
PleI GAGTC 2 cut(s) 334, 389
PmaCI CACGTG 1 cut(s) 350
PmlI CACGTG 1 cut(s) 350
PpsI GAGTC 2 cut(s) 334, 389
Ppu21I YACGTR 1 cut(s) 350
PsiI TTATAA 1 cut(s) 369
Psp1406I AACGTT 1 cut(s) 256
PspCI CACGTG 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 2 cut(s) 162, 178
RsaNI GTAC 2 cut(s) 161, 177
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 4 cut(s) 213, 388, 477, 601
Sau3AI GATC 5 cut(s) 28, 239, 487, 552, 696
ScaI AGTACT 1 cut(s) 162
SchI GAGTC 2 cut(s) 334, 389
SfaNI GCATC 2 cut(s) 326, 463
Sfr274I CTCGAG 1 cut(s) 708
SlaI CTCGAG 1 cut(s) 708
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 708
SmoI CTYRAG 1 cut(s) 708
Sse9I AATT 1 cut(s) 92
SsiI CCGC 1 cut(s) 600
SspMI CTAG 1 cut(s) 456
StyI CCWWGG 1 cut(s) 232
TaiI ACGT 4 cut(s) 259, 265, 352, 658
TaqI TCGA 2 cut(s) 699, 709
TasI AATT 1 cut(s) 92
TatI WGTACW 1 cut(s) 160
TauI GCSGC 1 cut(s) 603
TfiI GAWTC 2 cut(s) 128, 704
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 3 cut(s) 212, 387, 476
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 2 cut(s) 63, 509
TspRI CASTG 1 cut(s) 310
XceI RCATGY 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 708
XspI CTAG 1 cut(s) 456
ZrmI AGTACT 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.