pycom15g14700

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014627
Physical Location & Seq
Reverse (-)
10066563 .. 10067388
826 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g14700.2

Sequence Viewer

Length: 291 bp
ATGGATTTATTAACACAAGAGCATCATCCAAGCCTTGGGCGATCAATGTTCCTTAAACGCTCACGTCATCACTATGCGCATCAATACTCTCGACGTAACTCAGGCAATCTTGCTAACACATCAACTTCTCGCGGAAAAGGAGTGCCCTTGCATGACGATAAACTCTCCTATAAGTTGGCTACTCAATCCAGCTCCGAGTCCAGACGTCATTCAGAAAACAAGGAAAAGCCTTTTCTTTGGCCAGCCAGAATTAGATCTAGTTTCTTGGCAGCGGATGCTGTATCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4 zf-RING_UBOX

Protein Analysis

97

Amino Acids

10.96

Weight (kDa)

10.47

Isoelectric Point (pI)

81.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014627)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02200
malus_domestica MD02G1020600.v1.1 MD15G1163400.v1.1
prunus_persica Prupe.7G250900_v2.0.a1
pyrus_communis pycom15g14700
rosa_chinensis RchiOBHm_Chr2g0087291
rosa_laevigata RLG00000015851
rosa_multiflora Rmu_sc0003367.1_g000018
rosa_roxburghii Rroxscaffold_2G00153740
rosa_rugosa Rorug01G0473700 Rorug01G0473700 Rorug01G0473700
rosa_samantha Rh2AG027600 Rh2BG026700 Rh2CG027800 Rh2DG027400
rosa_wichuraiana Rw2G002160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 208
Acc16I TGCGCA 1 cut(s) 78
AccB7I CCANNNNNTGG 1 cut(s) 35
AccII CGCG 1 cut(s) 132
AciI CCGC 2 cut(s) 132, 272
AcoI YGGCCR 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 35
AjiI CACGTC 1 cut(s) 65
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 269
AspLEI GCGC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 276
BaeGI GKGCMC 1 cut(s) 147
BalI TGGCCA 1 cut(s) 241
BbvI GCAGC 1 cut(s) 281
BfaI CTAG 1 cut(s) 258
BglII AGATCT 1 cut(s) 254
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 65
BmsI GCATC 3 cut(s) 31, 88, 265
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 2 cut(s) 25, 280
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 114
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 1 cut(s) 281
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 41, 254
BspACI CCGC 2 cut(s) 132, 272
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 113
BspFNI CGCG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 2 cut(s) 41, 254
BssNI GRCGYC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 205
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 2 cut(s) 25, 280
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 2 cut(s) 44, 257
BstMBI GATC 2 cut(s) 41, 254
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstSLI GKGCMC 1 cut(s) 147
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 1 cut(s) 241
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 25, 280
Cac8I GCNNGC 1 cut(s) 243
CfoI GCGC 1 cut(s) 79
CviAII CATG 2 cut(s) 152, 288
CviJI RGCY 6 cut(s) 33, 179, 192, 229, 241, 245
CviKI_1 RGCY 6 cut(s) 33, 179, 192, 229, 241, 245
DdeI CTNAG 1 cut(s) 100
DpnI GATC 2 cut(s) 43, 256
DpnII GATC 2 cut(s) 41, 254
EaeI YGGCCR 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 2 cut(s) 155, 291
FaiI YATR 4 cut(s) 75, 153, 171, 289
FatI CATG 2 cut(s) 151, 287
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 2 cut(s) 12, 287
Fsp4HI GCNGC 1 cut(s) 270
FspAI RTGCGCAY 1 cut(s) 78
FspBI CTAG 1 cut(s) 258
FspI TGCGCA 1 cut(s) 78
GlaI GCGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 270
HaeIII GGCC 1 cut(s) 241
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 2 cut(s) 155, 291
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 1 cut(s) 197
HphI GGTGA 1 cut(s) 276
Hpy188I TCNGA 2 cut(s) 196, 214
Hpy188III TCNNGA 2 cut(s) 90, 201
Hpy99I CGWCG 1 cut(s) 96
HpyCH4IV ACGT 3 cut(s) 64, 94, 205
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 3 cut(s) 64, 94, 205
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 2 cut(s) 155, 291
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 2 cut(s) 41, 254
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 5 cut(s) 87, 202, 214, 255, 259
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 3 cut(s) 31, 88, 265
MaeI CTAG 1 cut(s) 258
MaeII ACGT 3 cut(s) 64, 94, 205
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 43, 256
MboI GATC 2 cut(s) 41, 254
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 147
MlsI TGGCCA 1 cut(s) 241
MluCI AATT 1 cut(s) 249
MluNI TGGCCA 1 cut(s) 241
MlyI GAGTC 1 cut(s) 206
Mox20I TGGCCA 1 cut(s) 241
MscI TGGCCA 1 cut(s) 241
MseI TTAA 2 cut(s) 11, 54
MslI CAYNNNNRTG 1 cut(s) 72
Msp20I TGGCCA 1 cut(s) 241
MspA1I CMGCKG 1 cut(s) 272
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 2 cut(s) 41, 254
NlaIII CATG 2 cut(s) 155, 291
NsbI TGCGCA 1 cut(s) 78
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PsuI RGATCY 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 2 cut(s) 11, 54
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 2 cut(s) 41, 254
SchI GAGTC 1 cut(s) 206
SduI GDGCHC 1 cut(s) 147
SetI ASST 4 cut(s) 67, 97, 194, 208
SfaNI GCATC 3 cut(s) 31, 88, 265
SmiMI CAYNNNNRTG 1 cut(s) 72
Sse9I AATT 1 cut(s) 249
SsiI CCGC 2 cut(s) 132, 272
SspMI CTAG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 34
TaiI ACGT 3 cut(s) 67, 97, 208
TaqI TCGA 1 cut(s) 91
TasI AATT 1 cut(s) 249
Tru1I TTAA 2 cut(s) 11, 54
Tru9I TTAA 2 cut(s) 11, 54
TseI GCWGC 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 35
XspI CTAG 1 cut(s) 258
ZraI GACGTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.