Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006524

Physical Location & Seq

Genomic Coordinates Forward (+)

16253008 .. 16255636

Gene Structure 2629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1204300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTCAGAGAAGAGGGAAGAGAGAGAGATGAACGTGTACCTGGACGGGATGATAGAGTCCATGCCTGTGTTCGCCAAGGAGCTGATCGCCGGTGGCGTCGCCGGCGGGGTTGCAAAAACAGTGGTTGCGCCACTCGAGCGCATCAAGATTTTGTTTCAGACCAGAAGAGCAGAATACCAGAGCATCGGACTTTTTGGATCCGTTAAGAAAATTGCAAAGACAGAAGGGCCTATGGGTTTCTACAGGGGAAATGGAGCTAGTGTTGCAAGAATTGTTCCATATGCAGCCCTGCATTATATGACCTATGAACAATACCGCAGATGGATTATTCTCACCTTTCCTGACGTTGGGCGGGGACCTGGTCTTGATCTTGTGGCAGGATCTTTTGCTGGAGGAACAGCTGTGCTTTTTACTTATCCCCTTGATTTGGTTCGGACAAAGTTGGCCTATCAGGTTGTCGGTTCACAGAAGTTAAATGTTCAAGGGGTACTGAATTCTCAACAAATATATAAAGGAATTCTCGATTGTTTCTCAATGACGTACAGAGAGGCTGGACTTAGAGGCCTCTACCGTGGCGTTGCTCCGTCGCTTTATGGGATCTTCCCATATGCCGGTTTGAAGTTTTACTTCTACGAGGAGATGAAGCGCCATGTCCCTCCGGAGCACAAGAAGAGTATTGTGTTCAAACTCGTATGTGGTTCTGTTGCTGGTGTATTAGGCCAGACTTTTACGTATCCCCTTGATGTGGTGAGGAGGCAGATGCAGGTTCAACGAATTATGGTATCAAGCAGTCCAGAGATGAAGGGAACAATCGAAACCCTCGTTATGATCGCTCAAAAGCAAGGATGGAAGCAATTGTTTTCAGGACTTAGCATCAATTACTTGAAGGTGGTCGTACCATCTGTGGCGATCGGGTTCACAGTTTACGATATAATGAAGTCCTGCCTTCGAGTTCCATCAAGGGACGAAGCTGAAGTTGTGAGAAAAGTGGTAACCAACAAAAGAAGTACCCATCCATCCTCCCTTGACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006732 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009058 GO:0009108 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015228 GO:0015291 GO:0015297 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015880 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051186 GO:0051188 GO:0051234 GO:0051503 GO:0055085 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0072530 GO:0098656 GO:1901264 GO:1901505 GO:1901679 GO:1990542 GO:1990559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

345

Amino Acids

38.33

Weight (kDa)

9.69

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	24 - 109	8e-25	Mitochondrial carrier protein
Mito_carr	PF00153	122 - 218	1.6e-23	Mitochondrial carrier protein
Mito_carr	PF00153	224 - 316	2.8e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26180 AT4G26180
fragaria_vesca	FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110
malus_domestica	MD15G1204300.v1.1
prunus_persica	Prupe.7G212900_v2.0.a1 Prupe.7G212900_v2.0.a1 Prupe.7G212900_v2.0.a1 Prupe.7G212900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0093001
rosa_laevigata	RLG00000016358
rosa_multiflora	Rmu_sc0000965.1_g000022
rosa_roxburghii	Rroxscaffold_2G00148630
rosa_rugosa	Rorug02G0031300 Rorug02G0031400 Rorug02G0031500
rosa_samantha	Rh2AG077100 Rh2BG078500 Rh2CG080700 Rh2DG075800
rosa_wichuraiana	Rw2G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	754
AccIII	TCCGGA	1 cut(s)	658
AciI	CCGC	3 cut(s)	105, 316, 352
AclWI	GGATC	4 cut(s)	192, 205, 388, 605
AcsI	RAATTY	2 cut(s)	493, 516
AcuI	CTGAAG	1 cut(s)	993
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	5 cut(s)	38, 489, 542, 897, 1009
AfiI	CCNNNNNNNGG	4 cut(s)	347, 427, 611, 745
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	5 cut(s)	482, 619, 685, 770, 886
AjnI	CCWGG	2 cut(s)	39, 358
AluBI	AGCT	4 cut(s)	82, 257, 401, 971
AluI	AGCT	4 cut(s)	82, 257, 401, 971
Alw21I	GWGCWC	1 cut(s)	666
AlwI	GGATC	4 cut(s)	192, 205, 388, 605
Ama87I	CYCGRG	1 cut(s)	134
Aor13HI	TCCGGA	1 cut(s)	658
AoxI	GGCC	4 cut(s)	227, 444, 562, 718
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	2 cut(s)	493, 516
AspLEI	GCGC	3 cut(s)	130, 141, 648
AspS9I	GGNCC	2 cut(s)	227, 356
AsuHPI	GGTGA	2 cut(s)	325, 760
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	6 cut(s)	315, 840, 907, 964, 1020, 1024
BciT130I	CCWGG	2 cut(s)	41, 360
BciVI	GTATCC	1 cut(s)	744
BfaI	CTAG	2 cut(s)	258, 1033
BfmI	CTRYAG	1 cut(s)	241
BfoI	RGCGCY	1 cut(s)	649
BfuAI	ACCTGC	1 cut(s)	754
BfuI	GTATCC	1 cut(s)	744
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	2 cut(s)	41, 360
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	227, 356
BmiI	GGNNCC	2 cut(s)	199, 357
BmrFI	CCNGG	2 cut(s)	41, 360
BmsI	GCATC	4 cut(s)	150, 192, 750, 882
BpmI	CTGGAG	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	732
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	75, 571
BsaWI	WCCGGW	1 cut(s)	658
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 427, 611, 745
Bse118I	RCCGGY	3 cut(s)	89, 101, 611
BseAI	TCCGGA	1 cut(s)	658
BseBI	CCWGG	2 cut(s)	41, 360
BseDI	CCNNGG	2 cut(s)	75, 571
BseGI	GGATG	4 cut(s)	54, 851, 1012, 1016
BseLI	CCNNNNNNNGG	4 cut(s)	347, 427, 611, 745
BseRI	GAGGAG	2 cut(s)	650, 766
BseXI	GCAGC	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	912
BshFI	GGCC	4 cut(s)	229, 446, 564, 720
BsiEI	CGRYCG	1 cut(s)	912
BsiHKAI	GWGCWC	1 cut(s)	666
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	4 cut(s)	90, 102, 612, 659
BslFI	GGGAC	3 cut(s)	369, 638, 977
BslI	CCNNNNNNNGG	4 cut(s)	347, 427, 611, 745
BsmFI	GGGAC	3 cut(s)	369, 638, 977
BsnI	GGCC	4 cut(s)	229, 446, 564, 720
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp13I	TCCGGA	1 cut(s)	658
Bsp143I	GATC	7 cut(s)	84, 197, 367, 380, 597, 828, 909
BspACI	CCGC	3 cut(s)	105, 316, 352
BspANI	GGCC	4 cut(s)	229, 446, 564, 720
BspEI	TCCGGA	1 cut(s)	658
BspLI	GGNNCC	2 cut(s)	199, 357
BspMI	ACCTGC	1 cut(s)	754
BspPI	GGATC	4 cut(s)	192, 205, 388, 605
BspQI	GCTCTTC	1 cut(s)	160
BsrFI	RCCGGY	3 cut(s)	89, 101, 611
BssAI	RCCGGY	3 cut(s)	89, 101, 611
BssECI	CCNNGG	2 cut(s)	75, 571
BssMI	GATC	7 cut(s)	84, 197, 367, 380, 597, 828, 909
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	41, 360
Bst4CI	ACNGT	3 cut(s)	121, 572, 922
Bst6I	CTCTTC	4 cut(s)	5, 12, 160, 665
BstACI	GRCGYC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	732
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	557, 869
BstDSI	CCRYGG	1 cut(s)	571
BstEII	GGTNACC	1 cut(s)	991
BstF5I	GGATG	4 cut(s)	54, 851, 1012, 1016
BstH2I	RGCGCY	1 cut(s)	649
BstHHI	GCGC	3 cut(s)	130, 141, 648
BstKTI	GATC	7 cut(s)	87, 200, 370, 383, 600, 831, 912
BstMBI	GATC	7 cut(s)	84, 197, 367, 380, 597, 828, 909
BstMCI	CGRYCG	1 cut(s)	912
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 136, 263
BstNI	CCWGG	2 cut(s)	41, 360
BstPI	GGTNACC	1 cut(s)	991
BstSCI	CCNGG	2 cut(s)	39, 358
BstSFI	CTRYAG	1 cut(s)	241
BstSNI	TACGTA	1 cut(s)	732
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	3 cut(s)	197, 380, 597
BstYI	RGATCY	3 cut(s)	197, 380, 597
BsuI	GTATCC	1 cut(s)	744
BsuRI	GGCC	4 cut(s)	229, 446, 564, 720
BtgI	CCRYGG	1 cut(s)	571
BtsCI	GGATG	4 cut(s)	54, 851, 1012, 1016
BtsIMutI	CAGTG	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	754
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	3 cut(s)	130, 141, 648
Cfr10I	RCCGGY	3 cut(s)	89, 101, 611
Cfr13I	GGNCC	2 cut(s)	227, 356
CseI	GACGC	1 cut(s)	85
CsiI	ACCWGGT	1 cut(s)	358
Csp6I	GTAC	5 cut(s)	37, 488, 541, 896, 1008
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	2 cut(s)	61, 650
CviQI	GTAC	5 cut(s)	37, 488, 541, 896, 1008
DdeI	CTNAG	2 cut(s)	557, 869
DpnI	GATC	7 cut(s)	86, 199, 369, 382, 599, 830, 911
DpnII	GATC	7 cut(s)	84, 197, 367, 380, 597, 828, 909
Eam1104I	CTCTTC	4 cut(s)	5, 12, 160, 665
EarI	CTCTTC	4 cut(s)	5, 12, 160, 665
Eco105I	TACGTA	1 cut(s)	732
Eco130I	CCWWGG	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	993
Eco88I	CYCGRG	1 cut(s)	134
Eco91I	GGTNACC	1 cut(s)	991
EcoO109I	RGGNCCY	2 cut(s)	227, 356
EcoO65I	GGTNACC	1 cut(s)	991
EcoRI	GAATTC	2 cut(s)	493, 516
EcoRII	CCWGG	2 cut(s)	39, 358
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	64, 653
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FaqI	GGGAC	3 cut(s)	369, 638, 977
FatI	CATG	2 cut(s)	60, 649
FauI	CCCGC	2 cut(s)	98, 345
FauNDI	CATATG	2 cut(s)	280, 607
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	4 cut(s)	61, 858, 999, 1003
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	258, 1033
GlaI	GCGC	3 cut(s)	129, 140, 647
GluI	GCNGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	649
HaeIII	GGCC	4 cut(s)	229, 446, 564, 720
HapII	CCGG	4 cut(s)	90, 102, 612, 659
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	3 cut(s)	130, 141, 648
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	64, 653
Hin6I	GCGC	3 cut(s)	128, 139, 646
HinP1I	GCGC	3 cut(s)	128, 139, 646
HinfI	GANTC	2 cut(s)	56, 1028
HpaII	CCGG	4 cut(s)	90, 102, 612, 659
HphI	GGTGA	2 cut(s)	325, 760
Hpy166II	GTNNAC	4 cut(s)	37, 464, 918, 925
Hpy188I	TCNGA	4 cut(s)	7, 159, 188, 435
Hpy188III	TCNNGA	7 cut(s)	145, 341, 365, 521, 659, 794, 864
Hpy8I	GTNNAC	4 cut(s)	37, 464, 918, 925
Hpy99I	CGWCG	2 cut(s)	101, 589
HpyAV	CCTTC	4 cut(s)	218, 796, 880, 956
HpyCH4III	ACNGT	3 cut(s)	121, 572, 922
HpyCH4IV	ACGT	4 cut(s)	33, 345, 539, 731
HpyCH4V	TGCA	6 cut(s)	113, 215, 266, 284, 292, 763
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 136, 263
HpyF3I	CTNAG	2 cut(s)	557, 869
HpySE526I	ACGT	4 cut(s)	33, 345, 539, 731
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	64, 653
HspAI	GCGC	3 cut(s)	128, 139, 646
Kpn2I	TCCGGA	1 cut(s)	658
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	7 cut(s)	84, 197, 367, 380, 597, 828, 909
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	4 cut(s)	79, 254, 586, 661
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	4 cut(s)	150, 192, 750, 882
MabI	ACCWGGT	1 cut(s)	358
MaeI	CTAG	2 cut(s)	258, 1033
MaeII	ACGT	4 cut(s)	33, 345, 539, 731
MaeIII	GTNAC	1 cut(s)	991
MalI	GATC	7 cut(s)	86, 199, 369, 382, 599, 830, 911
MboI	GATC	7 cut(s)	84, 197, 367, 380, 597, 828, 909
MboII	GAAGA	5 cut(s)	22, 29, 177, 592, 682
MfeI	CAATTG	1 cut(s)	854
MflI	RGATCY	3 cut(s)	197, 380, 597
MhlI	GDGCHC	1 cut(s)	666
MluCI	AATT	7 cut(s)	210, 270, 493, 516, 774, 854, 877
MlyI	GAGTC	2 cut(s)	65, 1022
MreI	CGCCGGCG	1 cut(s)	101
MroI	TCCGGA	1 cut(s)	658
MroNI	GCCGGC	1 cut(s)	101
MseI	TTAA	2 cut(s)	204, 473
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	4 cut(s)	90, 102, 612, 659
MspR9I	CCNGG	2 cut(s)	41, 360
MunI	CAATTG	1 cut(s)	854
MvaI	CCWGG	2 cut(s)	41, 360
MwoI	GCNNNNNNNGC	3 cut(s)	102, 136, 263
NaeI	GCCGGC	1 cut(s)	103
NdeI	CATATG	2 cut(s)	280, 607
NdeII	GATC	7 cut(s)	84, 197, 367, 380, 597, 828, 909
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	64, 653
NlaIV	GGNNCC	2 cut(s)	199, 357
PaeR7I	CTCGAG	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	564
PciSI	GCTCTTC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 819
PdiI	GCCGGC	1 cut(s)	103
PflFI	GACNNNGTC	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	286
Ple19I	CGATCG	1 cut(s)	912
PleI	GAGTC	2 cut(s)	64, 1022
PpsI	GAGTC	2 cut(s)	64, 1022
Ppu21I	YACGTR	1 cut(s)	732
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	39, 358
PspEI	GGTNACC	1 cut(s)	991
PspGI	CCWGG	2 cut(s)	39, 358
PspN4I	GGNNCC	2 cut(s)	199, 357
PspPI	GGNCC	2 cut(s)	227, 356
PspPPI	RGGWCCY	1 cut(s)	356
PspXI	VCTCGAGB	1 cut(s)	134
PsuI	RGATCY	3 cut(s)	197, 380, 597
PsyI	GACNNNGTC	1 cut(s)	360
PvuI	CGATCG	1 cut(s)	912
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	5 cut(s)	38, 489, 542, 897, 1009
RsaNI	GTAC	5 cut(s)	37, 488, 541, 896, 1008
RseI	CAYNNNNRTG	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	204, 473
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	7 cut(s)	84, 197, 367, 380, 597, 828, 909
Sau96I	GGNCC	2 cut(s)	227, 356
SchI	GAGTC	2 cut(s)	65, 1022
ScrFI	CCNGG	2 cut(s)	41, 360
SduI	GDGCHC	1 cut(s)	666
SexAI	ACCWGGT	1 cut(s)	358
SfaNI	GCATC	4 cut(s)	150, 192, 750, 882
SfcI	CTRYAG	1 cut(s)	241
Sfr274I	CTCGAG	1 cut(s)	134
SgrAI	CRCCGGYG	2 cut(s)	89, 101
SinI	GGWCC	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SnaBI	TACGTA	1 cut(s)	732
Sse9I	AATT	7 cut(s)	210, 270, 493, 516, 774, 854, 877
SseBI	AGGCCT	1 cut(s)	564
SsiI	CCGC	3 cut(s)	105, 316, 352
SspMI	CTAG	2 cut(s)	258, 1033
StuI	AGGCCT	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	39, 358
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	121, 572, 922
TaiI	ACGT	4 cut(s)	36, 348, 542, 734
TaqI	TCGA	4 cut(s)	135, 522, 813, 949
TasI	AATT	7 cut(s)	210, 270, 493, 516, 774, 854, 877
Tru1I	TTAA	2 cut(s)	204, 473
Tru9I	TTAA	2 cut(s)	204, 473
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	5 cut(s)	44, 321, 656, 815, 950
TspGWI	ACGGA	2 cut(s)	190, 573
TspRI	CASTG	1 cut(s)	126
Tth111I	GACNNNGTC	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	2 cut(s)	493, 516
XhoI	CTCGAG	1 cut(s)	134
XspI	CTAG	2 cut(s)	258, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.