Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000965.1

Orthogroup ID

OG0006524

Physical Location & Seq

Genomic Coordinates Forward (+)

97339 .. 99256

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000965.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgcctgtttttgccaaggagcttattgccggaggcgtcgccggcggtgttgcaaagacggtggtggctcctctggagcgtattaagattttgtttcagaccaggagatcagaatatcagagcttagggctgtttggatctgtgaagaagattgcaaagacagaagggccaatgggtttctacagaggcaatggagctagtgttgcaagaattgttccctatgcagccctgcattatatgagctatgagcaataccgcagatggattatcctcgcctttcctgacggggggcggggacctgttcttgatcttgttgcaggatcattatctggaggaacagctgtactctttacctatcctcttgatttagttcgtactaagttggcttatcaggttgttggttcaccaaagttaaaattgcaagggatcatgaatagtgaacaactttataaaggaattgttgattgtttctctaagacttacaaagaggctggacttagaggcctctatcgcggtgttgctccatccctttatggaatcttcccatatgccggtttgaagttctacttctatgagaagatgaagcgttatgtacctccggagcagaaaagcagtattatggtgaagcttgtatgtggttctgttgctggtttattaggtcagacttttacatacccccttgatgttgtgaggaggcaaatgcaggttcaacgactcttcgcatcaaacagtcctgagatgaaaggtacaatggaaagccttgttttgattgctaaacagcaaggatggaagcaattattttcaggacttagcatcaattacttgaaggttgtgccatctgtggcaattggattcactgtttacgatgttatgaaggcctaccttcgagttccatcacgagatgaaggtgtgaaagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006732 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009058 GO:0009108 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015228 GO:0015291 GO:0015297 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015880 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051186 GO:0051188 GO:0051234 GO:0051503 GO:0055085 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0072530 GO:0098656 GO:1901264 GO:1901505 GO:1901679 GO:1990542 GO:1990559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

306

Amino Acids

33.8

Weight (kDa)

9.86

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26180 AT4G26180
fragaria_vesca	FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110
malus_domestica	MD15G1204300.v1.1
prunus_persica	Prupe.7G212900_v2.0.a1 Prupe.7G212900_v2.0.a1 Prupe.7G212900_v2.0.a1 Prupe.7G212900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0093001
rosa_laevigata	RLG00000016358
rosa_multiflora	Rmu_sc0000965.1_g000022
rosa_roxburghii	Rroxscaffold_2G00148630
rosa_rugosa	Rorug02G0031300 Rorug02G0031400 Rorug02G0031500
rosa_samantha	Rh2AG077100 Rh2BG078500 Rh2CG080700 Rh2DG075800
rosa_wichuraiana	Rw2G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
Acc36I	ACCTGC	1 cut(s)	694
AccII	CGCG	1 cut(s)	513
AccIII	TCCGGA	1 cut(s)	598
AciI	CCGC	4 cut(s)	45, 256, 292, 513
AclWI	GGATC	3 cut(s)	145, 328, 434
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	4 cut(s)	345, 376, 594, 748
AfiI	CCNNNNNNNGG	2 cut(s)	287, 551
AgsI	TTSAA	3 cut(s)	559, 710, 826
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	6 cut(s)	22, 123, 197, 243, 341, 628
AluI	AGCT	6 cut(s)	22, 123, 197, 243, 341, 628
AlwI	GGATC	3 cut(s)	145, 328, 434
Aor13HI	TCCGGA	1 cut(s)	598
AoxI	GGCC	3 cut(s)	167, 502, 876
ApeKI	GCWGC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	167, 296
AsuHPI	GGTGA	2 cut(s)	396, 634
AvaII	GGWCC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	897
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	5 cut(s)	255, 532, 780, 844, 901
BciT130I	CCWGG	1 cut(s)	103
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	2 cut(s)	167, 296
BmiI	GGNNCC	2 cut(s)	69, 297
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	731, 822
BpmI	CTGGAG	2 cut(s)	95, 351
Bpu10I	CCTNAGC	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	325
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 551
Bse118I	RCCGGY	2 cut(s)	41, 551
Bse3DI	GCAATG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	2 cut(s)	524, 791
BseJI	GATNNNNATC	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	287, 551
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	726
BseRI	GAGGAG	2 cut(s)	60, 706
BseXI	GCAGC	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	3 cut(s)	169, 504, 878
BsiSI	CCGG	4 cut(s)	30, 42, 552, 599
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	287, 551
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	169, 504, 878
Bsp13I	TCCGGA	1 cut(s)	598
Bsp143I	GATC	5 cut(s)	107, 137, 307, 320, 426
BspACI	CCGC	4 cut(s)	45, 256, 292, 513
BspANI	GGCC	3 cut(s)	169, 504, 878
BspCNI	CTCAG	1 cut(s)	727
BspEI	TCCGGA	1 cut(s)	598
BspFNI	CGCG	1 cut(s)	513
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	69, 297
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	3 cut(s)	145, 328, 434
BsrDI	GCAATG	1 cut(s)	196
BsrFI	RCCGGY	2 cut(s)	41, 551
BssAI	RCCGGY	2 cut(s)	41, 551
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	5 cut(s)	107, 137, 307, 320, 426
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	897
BssT1I	CCWWGG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	3 cut(s)	61, 731, 859
Bst6I	CTCTTC	1 cut(s)	722
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	6 cut(s)	124, 378, 474, 497, 735, 809
BstF5I	GGATG	2 cut(s)	524, 791
BstFNI	CGCG	1 cut(s)	513
BstKTI	GATC	5 cut(s)	110, 140, 310, 323, 429
BstMBI	GATC	5 cut(s)	107, 137, 307, 320, 426
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 203, 510
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	169, 504, 878
BtsCI	GGATG	2 cut(s)	524, 791
BtsIMutI	CAGTG	1 cut(s)	855
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	1 cut(s)	43
CciI	TCATGA	1 cut(s)	429
Cfr10I	RCCGGY	2 cut(s)	41, 551
Cfr13I	GGNCC	2 cut(s)	167, 296
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	4 cut(s)	344, 375, 593, 747
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	1 cut(s)	430
CviQI	GTAC	4 cut(s)	344, 375, 593, 747
DdeI	CTNAG	6 cut(s)	124, 378, 474, 497, 735, 809
DpnI	GATC	5 cut(s)	109, 139, 309, 322, 428
DpnII	GATC	5 cut(s)	107, 137, 307, 320, 426
Eam1104I	CTCTTC	1 cut(s)	722
EarI	CTCTTC	1 cut(s)	722
Eco130I	CCWWGG	1 cut(s)	15
Eco147I	AGGCCT	2 cut(s)	504, 878
Eco47I	GGWCC	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	433
FalI	AAGNNNNNCTT	2 cut(s)	551, 583
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	1 cut(s)	429
FauI	CCCGC	1 cut(s)	285
FauNDI	CATATG	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	2 cut(s)	511, 798
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	2 cut(s)	95, 351
HaeIII	GGCC	3 cut(s)	169, 504, 878
HapII	CCGG	4 cut(s)	30, 42, 552, 599
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	3 cut(s)	537, 714, 852
HpaII	CCGG	4 cut(s)	30, 42, 552, 599
HphI	GGTGA	2 cut(s)	396, 634
Hpy166II	GTNNAC	3 cut(s)	404, 440, 862
Hpy188I	TCNGA	4 cut(s)	99, 112, 120, 663
Hpy8I	GTNNAC	3 cut(s)	404, 440, 862
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	5 cut(s)	158, 820, 868, 893, 899
HpyCH4III	ACNGT	3 cut(s)	61, 731, 859
HpyCH4V	TGCA	8 cut(s)	53, 155, 206, 224, 232, 317, 421, 703
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 203, 510
HpyF3I	CTNAG	6 cut(s)	124, 378, 474, 497, 735, 809
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	433
Kpn2I	TCCGGA	1 cut(s)	598
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	5 cut(s)	107, 137, 307, 320, 426
LmnI	GCTCC	6 cut(s)	19, 73, 76, 194, 526, 601
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	2 cut(s)	731, 822
MaeI	CTAG	1 cut(s)	198
MalI	GATC	5 cut(s)	109, 139, 309, 322, 428
MboI	GATC	5 cut(s)	107, 137, 307, 320, 426
MboII	GAAGA	5 cut(s)	157, 160, 532, 589, 709
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	6 cut(s)	210, 416, 456, 794, 817, 846
MlyI	GAGTC	1 cut(s)	708
MreI	CGCCGGCG	1 cut(s)	41
MroI	TCCGGA	1 cut(s)	598
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	2 cut(s)	84, 413
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	4 cut(s)	30, 42, 552, 599
MspR9I	CCNGG	1 cut(s)	103
MunI	CAATTG	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	42, 203, 510
NaeI	GCCGGC	1 cut(s)	43
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	5 cut(s)	107, 137, 307, 320, 426
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	2 cut(s)	69, 297
PagI	TCATGA	1 cut(s)	429
PceI	AGGCCT	2 cut(s)	504, 878
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	537, 852
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	708
PpsI	GAGTC	1 cut(s)	708
PpuMI	RGGWCCY	1 cut(s)	296
PsiI	TTATAA	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	69, 297
PspPI	GGNCC	2 cut(s)	167, 296
PspPPI	RGGWCCY	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	4 cut(s)	345, 376, 594, 748
RsaNI	GTAC	4 cut(s)	344, 375, 593, 747
SaqAI	TTAA	2 cut(s)	84, 413
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	5 cut(s)	107, 137, 307, 320, 426
Sau96I	GGNCC	2 cut(s)	167, 296
SchI	GAGTC	1 cut(s)	708
ScrFI	CCNGG	1 cut(s)	103
SfaNI	GCATC	2 cut(s)	731, 822
SfcI	CTRYAG	1 cut(s)	181
SgrAI	CRCCGGYG	1 cut(s)	41
SinI	GGWCC	1 cut(s)	296
Sse9I	AATT	6 cut(s)	210, 416, 456, 794, 817, 846
SseBI	AGGCCT	2 cut(s)	504, 878
SsiI	CCGC	4 cut(s)	45, 256, 292, 513
SspMI	CTAG	1 cut(s)	198
StuI	AGGCCT	2 cut(s)	504, 878
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	3 cut(s)	61, 731, 859
TaqI	TCGA	1 cut(s)	886
TasI	AATT	6 cut(s)	210, 416, 456, 794, 817, 846
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	2 cut(s)	537, 852
Tru1I	TTAA	2 cut(s)	84, 413
Tru9I	TTAA	2 cut(s)	84, 413
TscAI	CASTG	1 cut(s)	862
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	5 cut(s)	446, 596, 755, 887, 918
TspRI	CASTG	1 cut(s)	862
VpaK11BI	GGWCC	1 cut(s)	296
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.