Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006524

Physical Location & Seq

Genomic Coordinates Reverse (-)

86253832 .. 86255852

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00148630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCGAAGAAGAGAGAAGAAAGAGAGACGAATGTGTACCTAAATGGGGTTATAGACGCCATGCCTGTGTTTGCCAAGGAGCTTATTGCCGGAGGCGTCGCCGGCGGTGTTGCAAAGACGGTGGTGGCTCCTCTGGAGCGTATTAAGATTTTGTTTCAGTTATATAGAGGCAGTCATGGGGTGGTCAATGCACACACAGATAGATACACATGTATTGATTTTGATTTGAAGATGAGTGCTTTGATTTTGTTGCTCTTCCATGAGACCAGAAGATCAGAATATCAGAGCTTAGGGCTGTTTGGATCTGTGAAGAAGATTGCAAAGACAGAAGGGCCAATGGGTTTCTACAGAGGCAATGGAGCTAGTGTTGCAAGAATTGTTCCCTATGCAGCCCTGCATTATATGAGCTATGAGCAATACCGCAGATGGATTATCCTCGCCTTTCCTGACGGGGGCGGGGACCTGTTCTTGATCTTGTTGCGGGATCATTATCTGGAGGAACAGCTATCTTTACACTTGAAGGAAAAATTTGCACTAAAGGGATCTTTGTTTCTGCAGGTTGTTGGTTCACCAAAGTTAAAATTGCAAGGGATCATGAATAATGAACAACTTTATAAAGGAATTGTTGATTGTTTCTCTAAGACTTACAAAGAGGCTGGACTTAGAGGCCTCTATCGCGGTGTTGCTCCATCCCTTTATGGAATCTTCCCATATGCCGGTTTGAAGTTCTACTTCTATGAGAAGATGAAGCGTTATGTACCTCCGGAGCAGAAAAGCAGTATTATGGTGAAGCTTGTATGTGGTTCTGTTGCTGGTTTATTAGGTCAGACTTTTACATACCCCCTTGATGTTGTGAGGAGGCAAATGCAGGTTCAACGACTCTATGCATCAAACAGTCCTGAGATGAAAGGTACAATGGAAAGCCTTGTTTTGATTGCTAAACAGCAAGGATGGAAGCAATTATTTTCAGGACTTAGCATCAATTACTTGAAGGTGGTTGTGCCATCTGTGGCAGTTGGATTCACTGTTTATGATGTTATGAAGGCCTACCTTCGAGTTCCATCACGAGACGAAGGTGTGAAAGAAGTGGTAACCAGCAATACAACTTCCCAGCCATCCTCGATTCACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006732 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009058 GO:0009108 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015228 GO:0015291 GO:0015297 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015880 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051186 GO:0051188 GO:0051234 GO:0051503 GO:0055085 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0072530 GO:0098656 GO:1901264 GO:1901505 GO:1901679 GO:1990542 GO:1990559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

377

Amino Acids

42.31

Weight (kDa)

9.56

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	24 - 144	3.5e-20	Mitochondrial carrier protein
Mito_carr	PF00153	198 - 253	3.7e-15	Mitochondrial carrier protein
Mito_carr	PF00153	258 - 352	4.4e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26180 AT4G26180
fragaria_vesca	FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110
malus_domestica	MD15G1204300.v1.1
prunus_persica	Prupe.7G212900_v2.0.a1 Prupe.7G212900_v2.0.a1 Prupe.7G212900_v2.0.a1 Prupe.7G212900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0093001
rosa_laevigata	RLG00000016358
rosa_multiflora	Rmu_sc0000965.1_g000022
rosa_roxburghii	Rroxscaffold_2G00148630
rosa_rugosa	Rorug02G0031300 Rorug02G0031400 Rorug02G0031500
rosa_samantha	Rh2AG077100 Rh2BG078500 Rh2CG080700 Rh2DG075800
rosa_wichuraiana	Rw2G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
Acc36I	ACCTGC	2 cut(s)	547, 859
AccII	CGCG	1 cut(s)	678
AccIII	TCCGGA	1 cut(s)	763
AciI	CCGC	5 cut(s)	105, 421, 456, 481, 678
AclWI	GGATC	4 cut(s)	310, 492, 550, 599
AcsI	RAATTY	1 cut(s)	527
AcyI	GRCGYC	2 cut(s)	57, 96
AfaI	GTAC	3 cut(s)	38, 759, 913
AfiI	CCNNNNNNNGG	3 cut(s)	46, 452, 716
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	229, 520, 724, 875, 991
AluBI	AGCT	6 cut(s)	82, 288, 362, 408, 505, 793
AluI	AGCT	6 cut(s)	82, 288, 362, 408, 505, 793
Alw26I	GTCTC	3 cut(s)	20, 257, 1062
AlwI	GGATC	4 cut(s)	310, 492, 550, 599
Aor13HI	TCCGGA	1 cut(s)	763
AoxI	GGCC	3 cut(s)	332, 667, 1044
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	527
AspS9I	GGNCC	2 cut(s)	332, 460
AsuHPI	GGTGA	2 cut(s)	561, 799
AvaII	GGWCC	1 cut(s)	460
BaeI	ACNNNNGTAYC	2 cut(s)	196, 229
BauI	CACGAG	1 cut(s)	1065
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	6 cut(s)	420, 697, 945, 1012, 1069, 1123
BcoDI	GTCTC	3 cut(s)	20, 257, 1062
BfaI	CTAG	2 cut(s)	363, 1132
BfmI	CTRYAG	2 cut(s)	346, 554
BfuAI	ACCTGC	2 cut(s)	547, 859
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme18I	GGWCC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	332, 460
BmiI	GGNNCC	2 cut(s)	129, 461
BmsI	GCATC	2 cut(s)	896, 987
BpmI	CTGGAG	2 cut(s)	155, 515
Bpu10I	CCTNAGC	1 cut(s)	289
BsaBI	GATNNNNATC	1 cut(s)	489
BsaHI	GRCGYC	2 cut(s)	57, 96
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	763
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 452, 716
Bse118I	RCCGGY	2 cut(s)	101, 716
Bse3DI	GCAATG	1 cut(s)	361
Bse8I	GATNNNNATC	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	763
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	3 cut(s)	689, 956, 1115
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	3 cut(s)	46, 452, 716
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	891
BseRI	GAGGAG	2 cut(s)	120, 871
BseXI	GCAGC	1 cut(s)	401
BseYI	CCCAGC	1 cut(s)	1110
Bsh1236I	CGCG	1 cut(s)	678
BshFI	GGCC	3 cut(s)	334, 669, 1046
BsiSI	CCGG	4 cut(s)	90, 102, 717, 764
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	3 cut(s)	46, 452, 716
BsmAI	GTCTC	3 cut(s)	20, 257, 1062
BsmBI	CGTCTC	2 cut(s)	20, 1062
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	3 cut(s)	334, 669, 1046
Bso31I	GGTCTC	1 cut(s)	257
Bsp13I	TCCGGA	1 cut(s)	763
Bsp143I	GATC	6 cut(s)	272, 302, 471, 484, 542, 591
BspACI	CCGC	5 cut(s)	105, 421, 456, 481, 678
BspANI	GGCC	3 cut(s)	334, 669, 1046
BspCNI	CTCAG	1 cut(s)	892
BspEI	TCCGGA	1 cut(s)	763
BspFNI	CGCG	1 cut(s)	678
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	2 cut(s)	129, 461
BspMAI	CTGCAG	1 cut(s)	558
BspMI	ACCTGC	2 cut(s)	547, 859
BspPI	GGATC	4 cut(s)	310, 492, 550, 599
BspQI	GCTCTTC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	361
BsrFI	RCCGGY	2 cut(s)	101, 716
BssAI	RCCGGY	2 cut(s)	101, 716
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	6 cut(s)	272, 302, 471, 484, 542, 591
BssNI	GRCGYC	2 cut(s)	57, 96
BssSI	CACGAG	1 cut(s)	1065
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	1065
Bst4CI	ACNGT	3 cut(s)	121, 896, 1027
Bst6I	CTCTTC	2 cut(s)	5, 260
BstACI	GRCGYC	2 cut(s)	57, 96
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	5 cut(s)	289, 639, 662, 900, 974
BstEII	GGTNACC	1 cut(s)	1090
BstF5I	GGATG	3 cut(s)	689, 956, 1115
BstFNI	CGCG	1 cut(s)	678
BstKTI	GATC	6 cut(s)	275, 305, 474, 487, 545, 594
BstMAI	GTCTC	3 cut(s)	20, 257, 1062
BstMBI	GATC	6 cut(s)	272, 302, 471, 484, 542, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 368, 675
BstNSI	RCATGY	1 cut(s)	213
BstPI	GGTNACC	1 cut(s)	1090
BstSFI	CTRYAG	2 cut(s)	346, 554
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	1 cut(s)	401
BstX2I	RGATCY	2 cut(s)	302, 542
BstYI	RGATCY	2 cut(s)	302, 542
BsuRI	GGCC	3 cut(s)	334, 669, 1046
BtsCI	GGATG	3 cut(s)	689, 956, 1115
BtsIMutI	CAGTG	1 cut(s)	1023
BveI	ACCTGC	2 cut(s)	547, 859
Cac8I	GCNNGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	594
Cfr10I	RCCGGY	2 cut(s)	101, 716
Cfr13I	GGNCC	2 cut(s)	332, 460
CseI	GACGC	2 cut(s)	65, 85
Csp6I	GTAC	3 cut(s)	37, 758, 912
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	5 cut(s)	61, 176, 210, 260, 595
CviQI	GTAC	3 cut(s)	37, 758, 912
DdeI	CTNAG	5 cut(s)	289, 639, 662, 900, 974
DpnI	GATC	6 cut(s)	274, 304, 473, 486, 544, 593
DpnII	GATC	6 cut(s)	272, 302, 471, 484, 542, 591
Eam1104I	CTCTTC	2 cut(s)	5, 260
EarI	CTCTTC	2 cut(s)	5, 260
Eco130I	CCWWGG	1 cut(s)	75
Eco147I	AGGCCT	2 cut(s)	669, 1046
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	460
Eco91I	GGTNACC	1 cut(s)	1090
EcoO109I	RGGNCCY	1 cut(s)	460
EcoO65I	GGTNACC	1 cut(s)	1090
EcoT14I	CCWWGG	1 cut(s)	75
EcoT22I	ATGCAT	1 cut(s)	889
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	2 cut(s)	20, 1062
FaeI	CATG	5 cut(s)	64, 179, 213, 263, 598
FalI	AAGNNNNNCTT	2 cut(s)	716, 748
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	5 cut(s)	60, 175, 209, 259, 594
FauI	CCCGC	2 cut(s)	449, 474
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	3 cut(s)	676, 963, 1102
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	2 cut(s)	363, 1132
GluI	GCNGC	1 cut(s)	390
GsaI	CCCAGC	1 cut(s)	1114
GsuI	CTGGAG	2 cut(s)	155, 515
HaeIII	GGCC	3 cut(s)	334, 669, 1046
HapII	CCGG	4 cut(s)	90, 102, 717, 764
HgaI	GACGC	2 cut(s)	65, 85
Hin1I	GRCGYC	2 cut(s)	57, 96
Hin1II	CATG	5 cut(s)	64, 179, 213, 263, 598
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	4 cut(s)	702, 879, 1020, 1123
HpaII	CCGG	4 cut(s)	90, 102, 717, 764
HphI	GGTGA	2 cut(s)	561, 799
Hpy166II	GTNNAC	2 cut(s)	37, 569
Hpy188I	TCNGA	3 cut(s)	277, 285, 828
Hpy188III	TCNNGA	9 cut(s)	134, 446, 469, 494, 595, 764, 899, 969, 1065
Hpy8I	GTNNAC	2 cut(s)	37, 569
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	6 cut(s)	323, 514, 985, 1036, 1061, 1067
HpyCH4III	ACNGT	3 cut(s)	121, 896, 1027
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 368, 675
HpyF3I	CTNAG	5 cut(s)	289, 639, 662, 900, 974
Hsp92I	GRCGYC	2 cut(s)	57, 96
Hsp92II	CATG	5 cut(s)	64, 179, 213, 263, 598
Kpn2I	TCCGGA	1 cut(s)	763
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	6 cut(s)	272, 302, 471, 484, 542, 591
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	6 cut(s)	79, 133, 136, 359, 691, 766
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	2 cut(s)	896, 987
MaeI	CTAG	2 cut(s)	363, 1132
MaeIII	GTNAC	1 cut(s)	1090
MalI	GATC	6 cut(s)	274, 304, 473, 486, 544, 593
MboI	GATC	6 cut(s)	272, 302, 471, 484, 542, 591
MflI	RGATCY	2 cut(s)	302, 542
MluCI	AATT	6 cut(s)	375, 527, 581, 621, 959, 982
MlyI	GAGTC	1 cut(s)	873
MmeI	TCCRAC	1 cut(s)	997
Mph1103I	ATGCAT	1 cut(s)	889
MreI	CGCCGGCG	1 cut(s)	101
MroI	TCCGGA	1 cut(s)	763
MroNI	GCCGGC	1 cut(s)	101
MseI	TTAA	2 cut(s)	144, 578
MslI	CAYNNNNRTG	1 cut(s)	65
MspI	CCGG	4 cut(s)	90, 102, 717, 764
MvnI	CGCG	1 cut(s)	678
MwoI	GCNNNNNNNGC	3 cut(s)	102, 368, 675
NaeI	GCCGGC	1 cut(s)	103
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	6 cut(s)	272, 302, 471, 484, 542, 591
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	5 cut(s)	64, 179, 213, 263, 598
NlaIV	GGNNCC	2 cut(s)	129, 461
NsiI	ATGCAT	1 cut(s)	889
NspI	RCATGY	1 cut(s)	213
PagI	TCATGA	1 cut(s)	594
PceI	AGGCCT	2 cut(s)	669, 1046
PciI	ACATGT	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	260
PdiI	GCCGGC	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	702, 1020, 1123
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	1 cut(s)	873
PpsI	GAGTC	1 cut(s)	873
PpuMI	RGGWCCY	1 cut(s)	460
PscI	ACATGT	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	615
Psp5II	RGGWCCY	1 cut(s)	460
PspEI	GGTNACC	1 cut(s)	1090
PspFI	CCCAGC	1 cut(s)	1110
PspN4I	GGNNCC	2 cut(s)	129, 461
PspPI	GGNCC	2 cut(s)	332, 460
PspPPI	RGGWCCY	1 cut(s)	460
PstI	CTGCAG	1 cut(s)	558
PsuI	RGATCY	2 cut(s)	302, 542
RsaI	GTAC	3 cut(s)	38, 759, 913
RsaNI	GTAC	3 cut(s)	37, 758, 912
RseI	CAYNNNNRTG	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	144, 578
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	6 cut(s)	272, 302, 471, 484, 542, 591
Sau96I	GGNCC	2 cut(s)	332, 460
SchI	GAGTC	1 cut(s)	873
SfaNI	GCATC	2 cut(s)	896, 987
SfcI	CTRYAG	2 cut(s)	346, 554
SgrAI	CRCCGGYG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	6 cut(s)	375, 527, 581, 621, 959, 982
SseBI	AGGCCT	2 cut(s)	669, 1046
SsiI	CCGC	5 cut(s)	105, 421, 456, 481, 678
SspMI	CTAG	2 cut(s)	363, 1132
StuI	AGGCCT	2 cut(s)	669, 1046
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	121, 896, 1027
TaqI	TCGA	2 cut(s)	1054, 1121
TasI	AATT	6 cut(s)	375, 527, 581, 621, 959, 982
TfiI	GAWTC	3 cut(s)	702, 1020, 1123
Tru1I	TTAA	2 cut(s)	144, 578
Tru9I	TTAA	2 cut(s)	144, 578
TscAI	CASTG	1 cut(s)	1030
TseI	GCWGC	1 cut(s)	389
TspDTI	ATGAA	5 cut(s)	611, 618, 761, 920, 1055
TspRI	CASTG	1 cut(s)	1030
VpaK11BI	GGWCC	1 cut(s)	460
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	1 cut(s)	213
XspI	CTAG	2 cut(s)	363, 1132
Zsp2I	ATGCAT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.