Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006524

Physical Location & Seq

Genomic Coordinates Forward (+)

6019235 .. 6021217

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG078500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCGAAGAAGAGAGAAGAAAGAGAGACGAATGTGTACCTAAATGGGGTTATAGACGCCATGCCTGTTTTTGCCAAGGAGCTTATTGCCGGAGGCGTCGCCGGCGGTGTTGCAAAGACGGTGGTGGCTCCTCTGGAGCGTATTAAGATTTTGTTTCAGACCAGAAGATCAGAATATCAGAGCTTAGGGCTGTTTGGATCTGTGAAGAAGATTGCAAAGACAGAAGGGCCAATGGGTTTCTACAGAGGCAATGGAGCTAGTGTTGCAAGAATTGTTCCCTATGCAGCCCTGCATTATATGAGCTATGAGCAATACCGCAGATGGATTATCCTCGCCTTTCCTGACGGGGGGCGGGGACCTGTTCTTGATCTTGTTGCAGGATCATTATCTGGAGGAACAGCTGTACTCTTTACCTATCCTCTTGATTTAGTTCGTACTAAGTTGGCTTATCAGGTTGTCAGTTCACCAAAGTTAAAATTGCAAGGGATCATGAATAATGAACAACTTTATAAAGGAATTGTTGATTGTTTCTCTAAGACTTACAAAGAGGCTGGACTTAGAGGCCTCTATCGCGGTGTTGCTCCATCCCTTTATGGAATCTTCCCATATGCTGGTTTGAAGTTCTACTTCTATGAGAAGATGAAGCGTTATGTACCTCCGGAGCAGAAAAGCAGTATTATGGTGAAGCTTGTATGTGGTTCTGTTGCTGGTTTATTAGGTCAGACTTTTACATACCCCCTTGATGTTGTGAGGAGGCAAATGCAGGTTGTGCCATCTGTGGCAATTGGATTCACTGTTTACGATGTTATGAAGGCCTACCTTCGAGTTCCATCACGAGACGAAGGTGTGAAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006732 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009058 GO:0009108 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015228 GO:0015291 GO:0015297 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015880 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051186 GO:0051188 GO:0051234 GO:0051503 GO:0055085 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0072530 GO:0098656 GO:1901264 GO:1901505 GO:1901679 GO:1990542 GO:1990559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

285

Amino Acids

31.55

Weight (kDa)

9.77

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	24 - 109	1.2e-24	Mitochondrial carrier protein
Mito_carr	PF00153	120 - 218	9e-25	Mitochondrial carrier protein
Mito_carr	PF00153	223 - 284	4.8e-08	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26180 AT4G26180
fragaria_vesca	FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110 FvH4_1g07110
malus_domestica	MD15G1204300.v1.1
prunus_persica	Prupe.7G212900_v2.0.a1 Prupe.7G212900_v2.0.a1 Prupe.7G212900_v2.0.a1 Prupe.7G212900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0093001
rosa_laevigata	RLG00000016358
rosa_multiflora	Rmu_sc0000965.1_g000022
rosa_roxburghii	Rroxscaffold_2G00148630
rosa_rugosa	Rorug02G0031300 Rorug02G0031400 Rorug02G0031500
rosa_samantha	Rh2AG077100 Rh2BG078500 Rh2CG080700 Rh2DG075800
rosa_wichuraiana	Rw2G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
Acc36I	ACCTGC	1 cut(s)	754
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccII	CGCG	1 cut(s)	573
AccIII	TCCGGA	1 cut(s)	658
AciI	CCGC	4 cut(s)	105, 316, 352, 573
AclWI	GGATC	3 cut(s)	205, 388, 494
AcyI	GRCGYC	2 cut(s)	57, 96
AfaI	GTAC	4 cut(s)	38, 405, 436, 654
AfiI	CCNNNNNNNGG	3 cut(s)	46, 347, 611
AgsI	TTSAA	1 cut(s)	619
AluBI	AGCT	6 cut(s)	82, 183, 257, 303, 401, 688
AluI	AGCT	6 cut(s)	82, 183, 257, 303, 401, 688
Alw26I	GTCTC	2 cut(s)	20, 831
AlwI	GGATC	3 cut(s)	205, 388, 494
Aor13HI	TCCGGA	1 cut(s)	658
AoxI	GGCC	3 cut(s)	227, 562, 813
ApeKI	GCWGC	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	227, 356
AsuHPI	GGTGA	2 cut(s)	456, 694
AvaII	GGWCC	1 cut(s)	356
BauI	CACGAG	1 cut(s)	834
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	4 cut(s)	315, 592, 781, 838
BcoDI	GTCTC	2 cut(s)	20, 831
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	241
BfuAI	ACCTGC	1 cut(s)	754
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	227, 356
BmiI	GGNNCC	2 cut(s)	129, 357
BpmI	CTGGAG	2 cut(s)	155, 411
Bpu10I	CCTNAGC	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	385
BsaHI	GRCGYC	2 cut(s)	57, 96
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	658
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 347, 611
Bse118I	RCCGGY	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	385
BseAI	TCCGGA	1 cut(s)	658
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	584
BseJI	GATNNNNATC	1 cut(s)	385
BseLI	CCNNNNNNNGG	3 cut(s)	46, 347, 611
BseMI	GCAATG	1 cut(s)	256
BseRI	GAGGAG	2 cut(s)	120, 766
BseXI	GCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	573
BshFI	GGCC	3 cut(s)	229, 564, 815
BsiSI	CCGG	3 cut(s)	90, 102, 659
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	3 cut(s)	46, 347, 611
BsmAI	GTCTC	2 cut(s)	20, 831
BsmBI	CGTCTC	2 cut(s)	20, 831
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	3 cut(s)	229, 564, 815
Bsp13I	TCCGGA	1 cut(s)	658
Bsp143I	GATC	5 cut(s)	167, 197, 367, 380, 486
BspACI	CCGC	4 cut(s)	105, 316, 352, 573
BspANI	GGCC	3 cut(s)	229, 564, 815
BspEI	TCCGGA	1 cut(s)	658
BspFNI	CGCG	1 cut(s)	573
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	129, 357
BspMI	ACCTGC	1 cut(s)	754
BspPI	GGATC	3 cut(s)	205, 388, 494
BsrDI	GCAATG	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	5 cut(s)	167, 197, 367, 380, 486
BssNI	GRCGYC	2 cut(s)	57, 96
BssSI	CACGAG	1 cut(s)	834
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	834
Bst4CI	ACNGT	2 cut(s)	121, 796
Bst6I	CTCTTC	1 cut(s)	5
BstACI	GRCGYC	2 cut(s)	57, 96
BstAPI	GCANNNNNTGC	1 cut(s)	769
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	4 cut(s)	184, 438, 534, 557
BstF5I	GGATG	1 cut(s)	584
BstFNI	CGCG	1 cut(s)	573
BstKTI	GATC	5 cut(s)	170, 200, 370, 383, 489
BstMAI	GTCTC	2 cut(s)	20, 831
BstMBI	GATC	5 cut(s)	167, 197, 367, 380, 486
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 263, 570, 769
BstSFI	CTRYAG	1 cut(s)	241
BstUI	CGCG	1 cut(s)	573
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	229, 564, 815
BtsCI	GGATG	1 cut(s)	584
BtsIMutI	CAGTG	1 cut(s)	792
BveI	ACCTGC	1 cut(s)	754
Cac8I	GCNNGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	489
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	227, 356
CseI	GACGC	2 cut(s)	65, 85
Csp6I	GTAC	4 cut(s)	37, 404, 435, 653
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	2 cut(s)	61, 490
CviQI	GTAC	4 cut(s)	37, 404, 435, 653
DdeI	CTNAG	4 cut(s)	184, 438, 534, 557
DpnI	GATC	5 cut(s)	169, 199, 369, 382, 488
DpnII	GATC	5 cut(s)	167, 197, 367, 380, 486
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco130I	CCWWGG	1 cut(s)	75
Eco147I	AGGCCT	2 cut(s)	564, 815
Eco47I	GGWCC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	2 cut(s)	20, 831
FaeI	CATG	2 cut(s)	64, 493
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	2 cut(s)	60, 489
FauI	CCCGC	1 cut(s)	345
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	571
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	1 cut(s)	285
GsuI	CTGGAG	2 cut(s)	155, 411
HaeIII	GGCC	3 cut(s)	229, 564, 815
HapII	CCGG	3 cut(s)	90, 102, 659
HgaI	GACGC	2 cut(s)	65, 85
Hin1I	GRCGYC	2 cut(s)	57, 96
Hin1II	CATG	2 cut(s)	64, 493
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	2 cut(s)	597, 789
HpaII	CCGG	3 cut(s)	90, 102, 659
HphI	GGTGA	2 cut(s)	456, 694
Hpy166II	GTNNAC	3 cut(s)	37, 464, 799
Hpy188I	TCNGA	4 cut(s)	159, 172, 180, 723
Hpy188III	TCNNGA	8 cut(s)	134, 341, 365, 390, 422, 490, 659, 834
Hpy8I	GTNNAC	3 cut(s)	37, 464, 799
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	4 cut(s)	218, 805, 830, 836
HpyCH4III	ACNGT	2 cut(s)	121, 796
HpyCH4V	TGCA	8 cut(s)	113, 215, 266, 284, 292, 377, 481, 763
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 263, 570, 769
HpyF3I	CTNAG	4 cut(s)	184, 438, 534, 557
Hsp92I	GRCGYC	2 cut(s)	57, 96
Hsp92II	CATG	2 cut(s)	64, 493
Kpn2I	TCCGGA	1 cut(s)	658
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	167, 197, 367, 380, 486
LmnI	GCTCC	6 cut(s)	79, 133, 136, 254, 586, 661
Lsp1109I	GCAGC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	258
MalI	GATC	5 cut(s)	169, 199, 369, 382, 488
MboI	GATC	5 cut(s)	167, 197, 367, 380, 486
MboII	GAAGA	8 cut(s)	19, 22, 29, 177, 217, 220, 592, 649
MfeI	CAATTG	1 cut(s)	783
MflI	RGATCY	1 cut(s)	197
MluCI	AATT	4 cut(s)	270, 476, 516, 783
MreI	CGCCGGCG	1 cut(s)	101
MroI	TCCGGA	1 cut(s)	658
MroNI	GCCGGC	1 cut(s)	101
MseI	TTAA	2 cut(s)	144, 473
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	3 cut(s)	90, 102, 659
MunI	CAATTG	1 cut(s)	783
MvnI	CGCG	1 cut(s)	573
MwoI	GCNNNNNNNGC	4 cut(s)	102, 263, 570, 769
NaeI	GCCGGC	1 cut(s)	103
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	5 cut(s)	167, 197, 367, 380, 486
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	64, 493
NlaIV	GGNNCC	2 cut(s)	129, 357
PagI	TCATGA	1 cut(s)	489
PceI	AGGCCT	2 cut(s)	564, 815
PdiI	GCCGGC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	597, 789
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	356
PsiI	TTATAA	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	129, 357
PspPI	GGNCC	2 cut(s)	227, 356
PspPPI	RGGWCCY	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	4 cut(s)	38, 405, 436, 654
RsaNI	GTAC	4 cut(s)	37, 404, 435, 653
SaqAI	TTAA	2 cut(s)	144, 473
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	5 cut(s)	167, 197, 367, 380, 486
Sau96I	GGNCC	2 cut(s)	227, 356
SfcI	CTRYAG	1 cut(s)	241
SgrAI	CRCCGGYG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	356
Sse9I	AATT	4 cut(s)	270, 476, 516, 783
SseBI	AGGCCT	2 cut(s)	564, 815
SsiI	CCGC	4 cut(s)	105, 316, 352, 573
SspMI	CTAG	1 cut(s)	258
StuI	AGGCCT	2 cut(s)	564, 815
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	121, 796
TaqI	TCGA	1 cut(s)	823
TasI	AATT	4 cut(s)	270, 476, 516, 783
TatI	WGTACW	1 cut(s)	403
TfiI	GAWTC	2 cut(s)	597, 789
Tru1I	TTAA	2 cut(s)	144, 473
Tru9I	TTAA	2 cut(s)	144, 473
TscAI	CASTG	1 cut(s)	799
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	4 cut(s)	506, 513, 656, 824
TspRI	CASTG	1 cut(s)	799
Van91I	CCANNNNNTGG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	356
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.