Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011637

Physical Location & Seq

Genomic Coordinates Reverse (-)

22663327 .. 22667334

Gene Structure 4008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1264500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2145 bp

ATGCGTCTACATGGTTGCATGTGTCGTGAGGGGTCTTCAACCATTGCGACGAGCAGTTGCGGGAGAGGTGAAGTTTCCGGCCACAACAACATACATATCTTTGGGAAAGTAGTCCTTGGCCGGAGGTTGATCAAGAGACGAATAATGTCTTCTGACAATGCTCCGTCCCCGGACTCCTCATCCGCTTCACCACCTGCACCGGACTCGTCCAAATCATCACCATCTGGTCCATCTCCAAAGGAATCCCCAAAGGAGTCATCTTCAGAGCCAGCACCGTCCTCGCCACCGCCATCATCACCACCACCGTCCTCGCCGCCGCCATCTTCACCACCACCGTCCTCACCGCCACCATCTTCACCACCGCCTCCAAATGACTCGTCTTCACCATCATCGCCACCTCCCAAGGACTCATCTTCATCATCATCGCCACCTCCACCCAAGAAGGAGTCCCAGTCTCCACCTGCACCACAGCAGGCGACCCCATCTCCACCTCATGCTAGGGAACCACCGGGTAAGGCACCGCCGGCACAGAAGACACCAGAGGCAGATACTGGAGGTGAGACTTTCAGAGCGCCTCCTCCTCCAGGGCGCTCTCGGACTTCTCCCTCTGGTGCACTCACGCCATCACGTGGCAGTAGTTCCTCATCAAAAGATAGTTCTGATGATGACGGCACATCATCATCATATAGAGGTAGGATAGCCGGAGTTGCGATTGGGGCGGCGGTAATTATAATTGTCTTGCTCGTTGTTTGTGTGGTTTGTATCAGGAAGAAGAGGAGAAAACGCCGTGATATGCAGTACTATGGAGATCCTGCTAAAGCTGGTGGTGGCTATTACAACACACAACAACAAAATTGGCACGATATAAATAATCCACAAGGAGACCATGTGATGAGGCTAAACAACCAACCGCCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTCCTTGGCCTTCACCACCGCCTCAAATGCCGCTGAGCGGTGAAGTGAGCACCAATTATTCAGCAGCTCGGGGACCCCCATTGCCAGCCCTCTCACCAACAATGTCACTTGGGTTCAACAAGAGCACCTTCACTTATGATGAGCTAGCGGCCGCCACTAATGGGTTTAATGAGGCCAATTTGTTGGGTCAGGGCGGTTTCGGGTATGTGCACAAAGGTGTTTTGCCCAATGGAAAAGTAGTTGCAGTGAAAAGTCTCAAGTCGGGTAGTGGGCAAGGAGAACGAGAATTCGCGGCAGAGGTGGAGATCATTAGTCGAGTCCATCATCGGCATCTTGTGTCACTGGTTGGATATTGTATTGCTGGTGGGCAGAGAATGCTTGTCTATGAATTTGTTCCCAACAAAACCATGGAATATCACTTGCACGGAAAGGGTCTTCCACCTATGGATTGGCCAACTAGGCTTCGGATTGCAGTTGGGTCTGCCAAAGGGCTTGCATACCTTCACGAAGATTGCCACCCAAAAATCATCCATCGTGATATCAAATCTGCTAACATTCTCATTGATAACAACTTCGAAGCCATGGTTGCTGATTTTGGGTTGGCTAAGCTGTCTTCTGACAATTATACCCACGTCTCAACACGAGTCATGGGAACTTTCGGATATTTAGCTCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGATGTTTTCTCATTTGGGGTCATGCTCCTGGAACTCATAACTGGAAGGAAACCAGTGGATCCTTCAAATGCAATGGACGACAGCTTGGTTGACTGGGCTCGACCACTTCTCACTCGTTCATTAGAGGATGGTAATTACACGGAGCTAGTAGACATCGGTTTGGACAATAATTACAACCCTCAGGAGATGGCACGCATGGTCGCCTGTGCTGCTGCAAGTATCCGTCACTCTGCTAAAAAGCGCCCAAAGATGAGTCAGATAGTACGTGCACTAGAAGGAGAAGTGTCGCTGGACAACCTAAATGAGGGGACAAAACCCGGGCAGAGCTCTATGTTCAACGCGGGTGGAGGAAGCTCAGACTATGATACGCAAGCGTACAATGCTGACATGAAGAAGTTCAGAAAGTTAGCCCTTTCAAGCCAGGAATTAGGGAGCAGTGACTACGGGACTTCAAGTAATGACTCCAGAGAAATGAGCACACCCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019722 GO:0019932 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0090351 GO:0097305 GO:0097306 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

715

Amino Acids

75.51

Weight (kDa)

8.98

Isoelectric Point (pI)

71.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	371 - 577	6.2e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	374 - 642	8.4e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18470 AT2G18470 AT2G18470 AT2G18470
fragaria_vesca	FvH4_1g13460
malus_domestica	MD02G1149900.v1.1 MD15G1264500.v1.1
prunus_persica	Prupe.7G153100_v2.0.a1 Prupe.7G153100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101841
rosa_multiflora	Rmu_sc0000838.1_g000006
rosa_roxburghii	Rroxscaffold_2G00141000
rosa_rugosa	Rorug02G0102200 Rorug02G0102300
rosa_samantha	Rh2AG149800 Rh2BG155300 Rh2CG155700 Rh2DG155500
rosa_wichuraiana	Rw2G011720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	731
AarI	CACCTGC	2 cut(s)	202, 469
AasI	GACNNNNNNGTC	1 cut(s)	1648
Acc36I	ACCTGC	2 cut(s)	202, 469
AccB1I	GGYRCC	1 cut(s)	517
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccBSI	CCGCTC	1 cut(s)	981
AccI	GTMKAC	2 cut(s)	7, 1803
AccII	CGCG	2 cut(s)	1235, 1994
AclWI	GGATC	3 cut(s)	803, 1706, 1719
AcoI	YGGCCR	4 cut(s)	79, 118, 1092, 1394
AcsI	RAATTY	2 cut(s)	1229, 1331
AcuI	CTGAAG	1 cut(s)	246
AcvI	CACGTG	1 cut(s)	629
AfaI	GTAC	3 cut(s)	800, 1917, 2030
AfiI	CCNNNNNNNGG	7 cut(s)	584, 629, 917, 920, 980, 1104, 1957
AgsI	TTSAA	6 cut(s)	39, 1060, 1719, 1990, 2070, 2106
AjiI	CACGTC	1 cut(s)	1576
AjnI	CCWGG	4 cut(s)	583, 913, 1680, 2073
AleI	CACNNNNGTG	1 cut(s)	1158
AluBI	AGCT	9 cut(s)	821, 1010, 1087, 1552, 1613, 1737, 1798, 1980, 2007
AluI	AGCT	9 cut(s)	821, 1010, 1087, 1552, 1613, 1737, 1798, 1980, 2007
Alw21I	GWGCWC	7 cut(s)	616, 995, 1070, 1155, 1924, 1982, 2132
Alw26I	GTCTC	6 cut(s)	130, 459, 554, 876, 1202, 1582
Alw44I	GTGCAC	3 cut(s)	612, 1151, 1920
AlwI	GGATC	3 cut(s)	803, 1706, 1719
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	2 cut(s)	1011, 1970
AoxI	GGCC	6 cut(s)	79, 118, 950, 1092, 1116, 1394
ApaLI	GTGCAC	3 cut(s)	612, 1151, 1920
ApeKI	GCWGC	3 cut(s)	1007, 1862, 1865
ApoI	RAATTY	2 cut(s)	1229, 1331
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
Asp700I	GAANNNNTTC	2 cut(s)	1335, 2048
AspLEI	GCGC	3 cut(s)	574, 591, 1896
AspS9I	GGNCC	3 cut(s)	227, 944, 1016
AsuC2I	CCSGG	4 cut(s)	170, 510, 1971, 1972
AsuII	TTCGAA	1 cut(s)	1518
AsuNHI	GCTAGC	1 cut(s)	1087
AvaI	CYCGRG	2 cut(s)	1011, 1970
AvaII	GGWCC	3 cut(s)	227, 944, 1016
AxyI	CCTNAGG	1 cut(s)	1833
BaeGI	GKGCMC	3 cut(s)	616, 1155, 1924
BalI	TGGCCA	1 cut(s)	1396
BamHI	GGATCC	1 cut(s)	1711
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	2 cut(s)	1753, 1982
BauI	CACGAG	1 cut(s)	1584
BbrPI	CACGTG	1 cut(s)	629
BbsI	GAAGAC	6 cut(s)	27, 141, 372, 539, 1370, 1548
Bbv12I	GWGCWC	7 cut(s)	616, 995, 1070, 1155, 1924, 1982, 2132
BbvI	GCAGC	3 cut(s)	1019, 1849, 1852
BceAI	ACGGC	2 cut(s)	685, 771
BcgI	CGANNNNNNTGC	4 cut(s)	186, 220, 261, 295
BciT130I	CCWGG	4 cut(s)	585, 915, 1682, 2075
BciVI	GTATCC	1 cut(s)	1883
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	4 cut(s)	170, 510, 1971, 1972
BcoDI	GTCTC	6 cut(s)	130, 459, 554, 876, 1202, 1582
BfaI	CTAG	5 cut(s)	498, 1088, 1401, 1799, 1925
BfoI	RGCGCY	3 cut(s)	575, 592, 1897
BfuAI	ACCTGC	2 cut(s)	202, 469
BfuI	GTATCC	1 cut(s)	1883
BglI	GCCNNNNNGGC	1 cut(s)	1402
BlpI	GCTNAGC	2 cut(s)	977, 1548
BmcAI	AGTACT	1 cut(s)	800
Bme1390I	CCNGG	8 cut(s)	170, 510, 585, 915, 1682, 1971, 1972, 2075
Bme18I	GGWCC	3 cut(s)	227, 944, 1016
BmeT110I	CYCGRG	2 cut(s)	1011, 1970
BmgBI	CACGTC	1 cut(s)	1576
BmgT120I	GGNCC	3 cut(s)	227, 944, 1016
BmiI	GGNNCC	5 cut(s)	504, 519, 1017, 1018, 1713
BmrFI	CCNGG	8 cut(s)	170, 510, 585, 915, 1682, 1971, 1972, 2075
BmrI	ACTGGG	2 cut(s)	445, 1756
BmsI	GCATC	2 cut(s)	1282, 1634
BmtI	GCTAGC	1 cut(s)	1091
BmuI	ACTGGG	2 cut(s)	445, 1756
BpiI	GAAGAC	6 cut(s)	27, 141, 372, 539, 1370, 1548
BpmI	CTGGAG	4 cut(s)	567, 573, 1599, 2101
Bpu1102I	GCTNAGC	2 cut(s)	977, 1548
Bpu14I	TTCGAA	1 cut(s)	1518
BpuEI	CTTGAG	1 cut(s)	1184
BpuMI	CCSGG	4 cut(s)	170, 510, 1971, 1972
BsaAI	YACGTR	2 cut(s)	629, 1919
BsaI	GGTCTC	1 cut(s)	876
BsaJI	CCNNGG	8 cut(s)	115, 168, 402, 584, 947, 1350, 1524, 1970
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	6 cut(s)	437, 467, 469, 499, 873, 903
Bsc4I	CCNNNNNNNGG	7 cut(s)	584, 629, 917, 920, 980, 1104, 1957
Bse118I	RCCGGY	1 cut(s)	523
Bse1I	ACTGG	6 cut(s)	451, 556, 1290, 1699, 1706, 1751
Bse21I	CCTNAGG	1 cut(s)	1833
Bse3DI	GCAATG	3 cut(s)	42, 1022, 1731
BseBI	CCWGG	4 cut(s)	585, 915, 1682, 2075
BseDI	CCNNGG	8 cut(s)	115, 168, 402, 584, 947, 1350, 1524, 1970
BseGI	GGATG	3 cut(s)	179, 1470, 1786
BseLI	CCNNNNNNNGG	7 cut(s)	584, 629, 917, 920, 980, 1104, 1957
BseMI	GCAATG	3 cut(s)	42, 1022, 1731
BseMII	CTCAG	3 cut(s)	968, 1847, 2022
BseNI	ACTGG	6 cut(s)	451, 556, 1290, 1699, 1706, 1751
BseRI	GAGGAG	4 cut(s)	166, 567, 570, 790
BseSI	GKGCMC	3 cut(s)	616, 1155, 1924
BseX3I	CGGCCG	1 cut(s)	1092
BseXI	GCAGC	3 cut(s)	1019, 1849, 1852
BsgI	GTGCAG	2 cut(s)	180, 447
Bsh1236I	CGCG	2 cut(s)	1235, 1994
Bsh1285I	CGRYCG	1 cut(s)	1095
BshFI	GGCC	6 cut(s)	81, 120, 952, 1094, 1118, 1396
BshNI	GGYRCC	1 cut(s)	517
BsiEI	CGRYCG	1 cut(s)	1095
BsiHKAI	GWGCWC	7 cut(s)	616, 995, 1070, 1155, 1924, 1982, 2132
BsiHKCI	CYCGRG	2 cut(s)	1011, 1970
BsiSI	CCGG	8 cut(s)	78, 121, 170, 200, 509, 524, 702, 1971
BslFI	GGGAC	5 cut(s)	151, 433, 1029, 1975, 2113
BslI	CCNNNNNNNGG	7 cut(s)	584, 629, 917, 920, 980, 1104, 1957
BsmAI	GTCTC	6 cut(s)	130, 459, 554, 876, 1202, 1582
BsmBI	CGTCTC	2 cut(s)	130, 1582
BsmFI	GGGAC	5 cut(s)	151, 433, 1029, 1975, 2113
BsmI	GAATGC	1 cut(s)	1323
BsnI	GGCC	6 cut(s)	81, 120, 952, 1094, 1118, 1396
Bso31I	GGTCTC	1 cut(s)	876
BsoBI	CYCGRG	2 cut(s)	1011, 1970
Bsp119I	TTCGAA	1 cut(s)	1518
Bsp1286I	GDGCHC	8 cut(s)	616, 995, 1070, 1155, 1753, 1924, 1982, 2132
Bsp143I	GATC	4 cut(s)	129, 808, 1248, 1711
Bsp1720I	GCTNAGC	2 cut(s)	977, 1548
Bsp19I	CCATGG	2 cut(s)	1350, 1524
BspANI	GGCC	6 cut(s)	81, 120, 952, 1094, 1118, 1396
BspCNI	CTCAG	3 cut(s)	969, 1846, 2021
BspFNI	CGCG	2 cut(s)	1235, 1994
BspLI	GGNNCC	5 cut(s)	504, 519, 1017, 1018, 1713
BspMI	ACCTGC	2 cut(s)	202, 469
BspOI	GCTAGC	1 cut(s)	1091
BspPI	GGATC	3 cut(s)	803, 1706, 1719
BspT104I	TTCGAA	1 cut(s)	1518
BspT107I	GGYRCC	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	876
BsrBI	CCGCTC	1 cut(s)	981
BsrDI	GCAATG	3 cut(s)	42, 1022, 1731
BsrFI	RCCGGY	1 cut(s)	523
BsrI	ACTGG	6 cut(s)	451, 556, 1290, 1699, 1706, 1751
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	8 cut(s)	115, 168, 402, 584, 947, 1350, 1524, 1970
BssMI	GATC	4 cut(s)	129, 808, 1248, 1711
BssSI	CACGAG	1 cut(s)	1584
BssT1I	CCWWGG	5 cut(s)	115, 402, 947, 1350, 1524
Bst2BI	CACGAG	1 cut(s)	1584
Bst2UI	CCWGG	4 cut(s)	585, 915, 1682, 2075
Bst4CI	ACNGT	3 cut(s)	276, 306, 336
Bst6I	CTCTTC	1 cut(s)	767
BstAPI	GCANNNNNTGC	1 cut(s)	1318
BstBAI	YACGTR	2 cut(s)	629, 1919
BstBI	TTCGAA	1 cut(s)	1518
BstC8I	GCNNGC	8 cut(s)	270, 474, 525, 1029, 1089, 1437, 1846, 2025
BstDEI	CTNAG	4 cut(s)	977, 1548, 1833, 2008
BstDSI	CCRYGG	2 cut(s)	1350, 1524
BstENI	CCTNNNNNAGG	2 cut(s)	582, 1955
BstF5I	GGATG	3 cut(s)	179, 1470, 1786
BstFNI	CGCG	2 cut(s)	1235, 1994
BstH2I	RGCGCY	3 cut(s)	575, 592, 1897
BstHHI	GCGC	3 cut(s)	574, 591, 1896
BstKTI	GATC	4 cut(s)	132, 811, 1251, 1714
BstMAI	GTCTC	6 cut(s)	130, 459, 554, 876, 1202, 1582
BstMBI	GATC	4 cut(s)	129, 808, 1248, 1711
BstMCI	CGRYCG	1 cut(s)	1095
BstMWI	GCNNNNNNNGC	9 cut(s)	524, 707, 716, 970, 1318, 1402, 1529, 1862, 2033
BstNI	CCWGG	4 cut(s)	585, 915, 1682, 2075
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	8 cut(s)	168, 508, 583, 913, 1680, 1969, 1970, 2073
BstSLI	GKGCMC	3 cut(s)	616, 1155, 1924
BstUI	CGCG	2 cut(s)	1235, 1994
BstV1I	GCAGC	3 cut(s)	1019, 1849, 1852
BstV2I	GAAGAC	6 cut(s)	27, 141, 372, 539, 1370, 1548
BstX2I	RGATCY	2 cut(s)	808, 1711
BstXI	CCANNNNNNTGG	2 cut(s)	914, 1126
BstYI	RGATCY	2 cut(s)	808, 1711
BstZI	CGGCCG	1 cut(s)	1092
Bsu36I	CCTNAGG	1 cut(s)	1833
BsuI	GTATCC	1 cut(s)	1883
BsuRI	GGCC	6 cut(s)	81, 120, 952, 1094, 1118, 1396
BtgI	CCRYGG	2 cut(s)	1350, 1524
BtgZI	GCGATG	2 cut(s)	375, 408
BtrI	CACGTC	1 cut(s)	1576
BtsCI	GGATG	3 cut(s)	179, 1470, 1786
BtsI	GCAGTG	2 cut(s)	1194, 2095
BtsIMutI	CAGTG	4 cut(s)	1194, 1283, 1713, 2095
BveI	ACCTGC	2 cut(s)	202, 469
Cac8I	GCNNGC	8 cut(s)	270, 474, 525, 1029, 1089, 1437, 1846, 2025
CaiI	CAGNNNCTG	1 cut(s)	551
CciNI	GCGGCCGC	1 cut(s)	1092
CfoI	GCGC	3 cut(s)	574, 591, 1896
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	3 cut(s)	227, 944, 1016
Cfr9I	CCCGGG	1 cut(s)	1970
Csp6I	GTAC	3 cut(s)	799, 1916, 2029
CspCI	CAANNNNNGTGG	2 cut(s)	1978, 2013
CviQI	GTAC	3 cut(s)	799, 1916, 2029
DdeI	CTNAG	4 cut(s)	977, 1548, 1833, 2008
DpnI	GATC	4 cut(s)	131, 810, 1250, 1713
DpnII	GATC	4 cut(s)	129, 808, 1248, 1711
DrdI	GACNNNNNNGTC	1 cut(s)	1648
DseDI	GACNNNNNNGTC	1 cut(s)	1648
EaeI	YGGCCR	4 cut(s)	79, 118, 1092, 1394
EagI	CGGCCG	1 cut(s)	1092
Eam1104I	CTCTTC	1 cut(s)	767
EarI	CTCTTC	1 cut(s)	767
Ecl136II	GAGCTC	1 cut(s)	1980
EclXI	CGGCCG	1 cut(s)	1092
Eco130I	CCWWGG	5 cut(s)	115, 402, 947, 1350, 1524
Eco24I	GRGCYC	2 cut(s)	1753, 1982
Eco31I	GGTCTC	1 cut(s)	876
Eco32I	GATATC	1 cut(s)	1483
Eco47I	GGWCC	3 cut(s)	227, 944, 1016
Eco52I	CGGCCG	1 cut(s)	1092
Eco53kI	GAGCTC	1 cut(s)	1980
Eco57I	CTGAAG	1 cut(s)	246
Eco72I	CACGTG	1 cut(s)	629
Eco81I	CCTNAGG	1 cut(s)	1833
Eco88I	CYCGRG	2 cut(s)	1011, 1970
EcoICRI	GAGCTC	1 cut(s)	1980
EcoNI	CCTNNNNNAGG	2 cut(s)	582, 1955
EcoO109I	RGGNCCY	1 cut(s)	1016
EcoRI	GAATTC	1 cut(s)	1229
EcoRII	CCWGG	4 cut(s)	583, 913, 1680, 2073
EcoRV	GATATC	1 cut(s)	1483
EcoT14I	CCWWGG	5 cut(s)	115, 402, 947, 1350, 1524
EcoT22I	ATGCAT	1 cut(s)	1627
EcoT38I	GRGCYC	2 cut(s)	1753, 1982
ErhI	CCWWGG	5 cut(s)	115, 402, 947, 1350, 1524
Esp3I	CGTCTC	2 cut(s)	130, 1582
FalI	AAGNNNNNCTT	4 cut(s)	99, 131, 1055, 1087
FaqI	GGGAC	5 cut(s)	151, 433, 1029, 1975, 2113
FauI	CCCGC	2 cut(s)	53, 1987
FbaI	TGATCA	1 cut(s)	129
FblI	GTMKAC	2 cut(s)	7, 1803
FokI	GGATG	3 cut(s)	166, 1457, 1793
FriOI	GRGCYC	2 cut(s)	1753, 1982
FspBI	CTAG	5 cut(s)	498, 1088, 1401, 1799, 1925
GlaI	GCGC	3 cut(s)	573, 590, 1895
GsuI	CTGGAG	4 cut(s)	567, 573, 1599, 2101
HaeII	RGCGCY	3 cut(s)	575, 592, 1897
HaeIII	GGCC	6 cut(s)	81, 120, 952, 1094, 1118, 1396
HapII	CCGG	8 cut(s)	78, 121, 170, 200, 509, 524, 702, 1971
HhaI	GCGC	3 cut(s)	574, 591, 1896
Hin6I	GCGC	3 cut(s)	572, 589, 1894
HinP1I	GCGC	3 cut(s)	572, 589, 1894
HincII	GTYRAC	1 cut(s)	1744
HindII	GTYRAC	1 cut(s)	1744
HpaII	CCGG	8 cut(s)	78, 121, 170, 200, 509, 524, 702, 1971
Hpy166II	GTNNAC	6 cut(s)	8, 614, 1153, 1744, 1804, 1922
Hpy188III	TCNNGA	8 cut(s)	26, 133, 766, 1448, 1478, 1616, 1835, 2118
Hpy8I	GTNNAC	6 cut(s)	8, 614, 1153, 1744, 1804, 1922
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	7 cut(s)	436, 963, 1081, 1454, 1692, 1725, 1922
HpyCH4III	ACNGT	3 cut(s)	276, 306, 336
HpyCH4IV	ACGT	3 cut(s)	628, 1575, 1918
HpyF10VI	GCNNNNNNNGC	9 cut(s)	524, 707, 716, 970, 1318, 1402, 1529, 1862, 2033
HpyF3I	CTNAG	4 cut(s)	977, 1548, 1833, 2008
HpySE526I	ACGT	3 cut(s)	628, 1575, 1918
HspAI	GCGC	3 cut(s)	572, 589, 1894
KflI	GGGWCCC	1 cut(s)	1016
KroI	GCCGGC	1 cut(s)	523
KroNI	GCCGGC	1 cut(s)	525
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	129, 808, 1248, 1711
LmnI	GCTCC	5 cut(s)	166, 1618, 1683, 1795, 2085
Lsp1109I	GCAGC	3 cut(s)	1019, 1849, 1852
LweI	GCATC	2 cut(s)	1282, 1634
MaeI	CTAG	5 cut(s)	498, 1088, 1401, 1799, 1925
MaeII	ACGT	3 cut(s)	628, 1575, 1918
MaeIII	GTNAC	4 cut(s)	1047, 1281, 1877, 2090
MalI	GATC	4 cut(s)	131, 810, 1250, 1713
MbiI	CCGCTC	1 cut(s)	981
MboI	GATC	4 cut(s)	129, 808, 1248, 1711
MflI	RGATCY	2 cut(s)	808, 1711
MhlI	GDGCHC	8 cut(s)	616, 995, 1070, 1155, 1753, 1924, 1982, 2132
MlsI	TGGCCA	1 cut(s)	1396
MluNI	TGGCCA	1 cut(s)	1396
MmeI	TCCRAC	1 cut(s)	1270
Mox20I	TGGCCA	1 cut(s)	1396
Mph1103I	ATGCAT	1 cut(s)	1627
MroNI	GCCGGC	1 cut(s)	523
MroXI	GAANNNNTTC	2 cut(s)	1335, 2048
MscI	TGGCCA	1 cut(s)	1396
MseI	TTAA	1 cut(s)	1110
MslI	CAYNNNNRTG	1 cut(s)	1158
Msp20I	TGGCCA	1 cut(s)	1396
MspA1I	CMGCKG	1 cut(s)	976
MspI	CCGG	8 cut(s)	78, 121, 170, 200, 509, 524, 702, 1971
MspR9I	CCNGG	8 cut(s)	170, 510, 585, 915, 1682, 1971, 1972, 2075
Mva1269I	GAATGC	1 cut(s)	1323
MvaI	CCWGG	4 cut(s)	585, 915, 1682, 2075
MvnI	CGCG	2 cut(s)	1235, 1994
MwoI	GCNNNNNNNGC	9 cut(s)	524, 707, 716, 970, 1318, 1402, 1529, 1862, 2033
NaeI	GCCGGC	1 cut(s)	525
NciI	CCSGG	4 cut(s)	170, 510, 1971, 1972
NcoI	CCATGG	2 cut(s)	1350, 1524
NdeII	GATC	4 cut(s)	129, 808, 1248, 1711
NgoMIV	GCCGGC	1 cut(s)	523
NheI	GCTAGC	1 cut(s)	1087
NlaIV	GGNNCC	5 cut(s)	504, 519, 1017, 1018, 1713
NmuCI	GTSAC	4 cut(s)	1047, 1281, 1877, 2090
NotI	GCGGCCGC	1 cut(s)	1092
NsiI	ATGCAT	1 cut(s)	1627
NspI	RCATGY	1 cut(s)	22
NspV	TTCGAA	1 cut(s)	1518
OliI	CACNNNNGTG	1 cut(s)	1158
PaqCI	CACCTGC	2 cut(s)	202, 469
PctI	GAATGC	1 cut(s)	1323
PdiI	GCCGGC	1 cut(s)	525
PdmI	GAANNNNTTC	2 cut(s)	1335, 2048
PfeI	GAWTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	629
PfoI	TCCNGGA	1 cut(s)	1680
PmaCI	CACGTG	1 cut(s)	629
PmlI	CACGTG	1 cut(s)	629
Ppu21I	YACGTR	2 cut(s)	629, 1919
PpuMI	RGGWCCY	1 cut(s)	1016
PsiI	TTATAA	1 cut(s)	731
Psp124BI	GAGCTC	1 cut(s)	1982
Psp5II	RGGWCCY	1 cut(s)	1016
Psp6I	CCWGG	4 cut(s)	583, 913, 1680, 2073
PspCI	CACGTG	1 cut(s)	629
PspGI	CCWGG	4 cut(s)	583, 913, 1680, 2073
PspN4I	GGNNCC	5 cut(s)	504, 519, 1017, 1018, 1713
PspPI	GGNCC	3 cut(s)	227, 944, 1016
PspPPI	RGGWCCY	1 cut(s)	1016
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	808, 1711
RsaI	GTAC	3 cut(s)	800, 1917, 2030
RsaNI	GTAC	3 cut(s)	799, 1916, 2029
RseI	CAYNNNNRTG	1 cut(s)	1158
SacI	GAGCTC	1 cut(s)	1982
SaqAI	TTAA	1 cut(s)	1110
Sau3AI	GATC	4 cut(s)	129, 808, 1248, 1711
Sau96I	GGNCC	3 cut(s)	227, 944, 1016
ScaI	AGTACT	1 cut(s)	800
ScrFI	CCNGG	8 cut(s)	170, 510, 585, 915, 1682, 1971, 1972, 2075
SduI	GDGCHC	8 cut(s)	616, 995, 1070, 1155, 1753, 1924, 1982, 2132
SfaNI	GCATC	2 cut(s)	1282, 1634
SfuI	TTCGAA	1 cut(s)	1518
SinI	GGWCC	3 cut(s)	227, 944, 1016
SmaI	CCCGGG	1 cut(s)	1972
SmiMI	CAYNNNNRTG	1 cut(s)	1158
SmlI	CTYRAG	1 cut(s)	1199
SmoI	CTYRAG	1 cut(s)	1199
SspMI	CTAG	5 cut(s)	498, 1088, 1401, 1799, 1925
SstI	GAGCTC	1 cut(s)	1982
StyD4I	CCNGG	8 cut(s)	168, 508, 583, 913, 1680, 1969, 1970, 2073
StyI	CCWWGG	5 cut(s)	115, 402, 947, 1350, 1524
TaaI	ACNGT	3 cut(s)	276, 306, 336
TaiI	ACGT	3 cut(s)	631, 1578, 1921
TaqI	TCGA	3 cut(s)	1258, 1518, 1753
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	7 cut(s)	316, 319, 722, 976, 1094, 1097, 1238
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	1110
Tru9I	TTAA	1 cut(s)	1110
TscAI	CASTG	4 cut(s)	1194, 1290, 1713, 2095
TseFI	GTSAC	4 cut(s)	1047, 1281, 1877, 2090
TseI	GCWGC	3 cut(s)	1007, 1862, 1865
Tsp45I	GTSAC	4 cut(s)	1047, 1281, 1877, 2090
TspDTI	ATGAA	4 cut(s)	405, 1344, 1761, 2057
TspGWI	ACGGA	4 cut(s)	153, 1383, 1808, 1865
TspMI	CCCGGG	1 cut(s)	1970
TspRI	CASTG	4 cut(s)	1194, 1290, 1713, 2095
Van91I	CCANNNNNTGG	1 cut(s)	629
VneI	GTGCAC	3 cut(s)	612, 1151, 1920
VpaK11BI	GGWCC	3 cut(s)	227, 944, 1016
XagI	CCTNNNNNAGG	2 cut(s)	582, 1955
XapI	RAATTY	2 cut(s)	1229, 1331
XceI	RCATGY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	3 cut(s)	914, 1348, 1389
XmaI	CCCGGG	1 cut(s)	1970
XmiI	GTMKAC	2 cut(s)	7, 1803
XmnI	GAANNNNTTC	2 cut(s)	1335, 2048
XspI	CTAG	5 cut(s)	498, 1088, 1401, 1799, 1925
ZrmI	AGTACT	1 cut(s)	800
Zsp2I	ATGCAT	1 cut(s)	1627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.