MD15G1287200.v1.1

tRNA-dihydrouridine(16 17) synthase NAD(P)( ) -like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
26352206 .. 26354203
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1287200.v1.1.491

Sequence Viewer

Length: 1293 bp
ATGAGATTCAAAATCCCCAATCTACCCCTTCTCCCTCCCAAAACCCTATATCCCCTAACCCCTAAATCTCACATGGCCTCTCTTCTCACCGCCGCAGAATCCCAAATCCGAACCCGAACTCTCCATTCGGCCCCACTGCAAGACCTCGACGACTCCCTCTGCTCCGACCACCACCAACAACAAGAAGAGCAACAACAGCAGACCTTCGCCGTTACAACGCCGTTGCGCTGCTTGACTGGCGAGTCGCGCATCGAGCGGGCATGGGCTCACTGGTCGAAACTGGGGCGGCCCAAACTGATTGTGGCGCCAATGGTGGACAACTCGGAGCTCCCGTTTCGTATGCTCTGCCGTAAGTACGGGGCCGACGCCGCCTACACGCCGATGCTCCACTCTCGCATTTTCACCGAGAGTGAGAAGTACCGGGAGCAAGAATTTACCACTTGCAAGGAGGACCGTCCATTATTTGTTCAATTTTGTGCCAATGATCCTGAAGTTTTGTTGGAGGCTGCAAAGAAAGTGGAGCCTCATTGTGATTATGTGGACATTAATTTGGGGTGTCCTCAGCGTATTGCGAGGAGGGGGAATTACGGAGCTTTTCTAATGGATAACCTTCCTCTTATAAAATCTCTGGTAGAGAACTTGGTTCAAAACCTGAATGTGCCTGTGTCGTGCAAAGTCCGAATCTTTCCAAATTTAGAGGATACAATCAAGTATGCTAGGATGCTTGAGGATGCGGGTTGCTCACTTTTAGCTGTCCACGGCCGGACCAGAGATGAGAAAGACCAGAAGAAAGTCCGGGCCAACTGGGACGCCATCATGGCCGTCAAGAATGCTCTCAGAATCCCCGTCCTTGCCAATGGTAACATCAGGCACATGGACGATGTTCGTGACTGTTTGGAAGCAACTGGTGCTGATGGGGTGCTTTCCGCAGAGTCTCTTCTTGAGAATCCAGCTCTCTTTGCTGGGTTTCGAACTGCTGAATGGGCAGCCGAGAATGAAGAAACTAAGAAAGATGGGATACTGGACCAGGCAGATCTTTTGGTGGAGTATTTGAAGCTTTGTGAACAATACCCTGTGCCTTGGCGGATGATTCGTGCTCATGTGCACAAGATGCTGGGGGAATGGTTCCGAATTCATCCACACATAAGAGAAGATCTCAATGCACAAAATAGACTCACTTTTGAATTTCTTTACGGTATAGTAGACCGCCTGAGAGAGCTGGGGTCAGGTATTCCACTTCATCTAAAAGAAACTACTGCTGCAACTGTTTCTGCAAATGGGTCGTCTACTTGA

Protein Analysis

431

Amino Acids

48.88

Weight (kDa)

6.41

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dus PF01207 101 - 374 1.1e-75 Dihydrouridine synthase (Dus)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67220
fragaria_vesca FvH4_1g16470
malus_domestica MD02G1177400.v1.1 MD15G1287200.v1.1
prunus_persica Prupe.6G230700_v2.0.a1
pyrus_communis pycom15g25070
rosa_chinensis RchiOBHm_Chr2g0106351
rosa_laevigata RLG00000017491
rosa_multiflora Rmu_sc0010122.1_g000004
rosa_roxburghii Rroxscaffold_2G00137260
rosa_rugosa Rorug02G0134900
rosa_samantha Rh2AG186000 Rh2BG196200 Rh2CG191000 Rh2DG192100
rosa_wichuraiana Rw2G014500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 620
AasI GACNNNNNNGTC 1 cut(s) 241
AccB1I GGYRCC 1 cut(s) 304
AccBSI CCGCTC 1 cut(s) 256
AccI GTMKAC 2 cut(s) 1203, 1286
AccII CGCG 1 cut(s) 247
AciI CCGC 9 cut(s) 90, 93, 256, 286, 369, 734, 927, 1084, 1207
AclWI GGATC 1 cut(s) 479
AcoI YGGCCR 2 cut(s) 760, 819
AcsI RAATTY 4 cut(s) 431, 691, 1131, 1184
AcuI CTGAAG 1 cut(s) 510
AcyI GRCGYC 3 cut(s) 305, 366, 810
AfaI GTAC 2 cut(s) 356, 419
AgsI TTSAA 5 cut(s) 10, 470, 647, 1054, 1184
AjnI CCWGG 1 cut(s) 1026
AluBI AGCT 6 cut(s) 328, 593, 752, 953, 1057, 1219
AluI AGCT 6 cut(s) 328, 593, 752, 953, 1057, 1219
Alw21I GWGCWC 3 cut(s) 330, 1099, 1107
Alw26I GTCTC 1 cut(s) 939
Alw44I GTGCAC 1 cut(s) 1103
AlwI GGATC 1 cut(s) 479
AoxI GGCC 7 cut(s) 75, 129, 287, 360, 760, 798, 819
ApaLI GTGCAC 1 cut(s) 1103
ApeKI GCWGC 4 cut(s) 228, 506, 986, 1259
ApoI RAATTY 4 cut(s) 431, 691, 1131, 1184
ArsI GACNNNNNNTTYG 1 cut(s) 1268
AseI ATTAAT 1 cut(s) 546
AspLEI GCGC 3 cut(s) 228, 249, 307
AspS9I GGNCC 7 cut(s) 130, 288, 360, 451, 765, 798, 1024
AsuC2I CCSGG 2 cut(s) 422, 797
AsuHPI GGTGA 2 cut(s) 79, 394
AsuII TTCGAA 1 cut(s) 970
AvaII GGWCC 3 cut(s) 451, 765, 1024
BaeGI GKGCMC 1 cut(s) 1107
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 2 cut(s) 268, 330
Bbv12I GWGCWC 3 cut(s) 330, 1099, 1107
BbvCI CCTCAGC 1 cut(s) 561
BbvI GCAGC 4 cut(s) 215, 493, 998, 1246
BccI CCATC 3 cut(s) 821, 908, 1007
BceAI ACGGC 5 cut(s) 194, 205, 333, 775, 806
BcgI CGANNNNNNTGC 1 cut(s) 1263
BciT130I CCWGG 1 cut(s) 1028
BciVI GTATCC 2 cut(s) 694, 1011
BcnI CCSGG 2 cut(s) 422, 797
BcoDI GTCTC 1 cut(s) 939
BfaI CTAG 1 cut(s) 717
BfoI RGCGCY 1 cut(s) 308
BfuI GTATCC 2 cut(s) 694, 1011
BglI GCCNNNNNGGC 1 cut(s) 818
BglII AGATCT 2 cut(s) 1033, 1153
BisI GCNGC 7 cut(s) 93, 229, 287, 369, 507, 987, 1260
BlsI GCNGC 7 cut(s) 94, 230, 288, 370, 508, 988, 1261
Bme1390I CCNGG 3 cut(s) 422, 797, 1028
Bme18I GGWCC 3 cut(s) 451, 765, 1024
BmgT120I GGNCC 7 cut(s) 130, 288, 360, 451, 765, 798, 1024
BmiI GGNNCC 5 cut(s) 132, 306, 361, 522, 1127
BmrFI CCNGG 3 cut(s) 422, 797, 1028
BmrI ACTGGG 2 cut(s) 290, 814
BmsI GCATC 5 cut(s) 258, 372, 711, 721, 1101
BmuI ACTGGG 2 cut(s) 290, 814
BplI GAGNNNNNCTC 2 cut(s) 1140, 1172
Bpu10I CCTNAGC 1 cut(s) 561
Bpu14I TTCGAA 1 cut(s) 970
BpuEI CTTGAG 2 cut(s) 746, 962
BpuMI CCSGG 2 cut(s) 422, 797
BsaHI GRCGYC 3 cut(s) 305, 366, 810
BsaJI CCNNGG 2 cut(s) 757, 1079
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 317, 347
Bse1I ACTGG 6 cut(s) 241, 275, 285, 809, 910, 1026
BseBI CCWGG 1 cut(s) 1028
BseDI CCNNGG 2 cut(s) 757, 1079
BseGI GGATG 4 cut(s) 726, 736, 1092, 1135
BseMII CTCAG 3 cut(s) 575, 850, 1202
BseNI ACTGG 6 cut(s) 241, 275, 285, 809, 910, 1026
BseRI GAGGAG 1 cut(s) 589
BseSI GKGCMC 1 cut(s) 1107
BseX3I CGGCCG 1 cut(s) 760
BseXI GCAGC 4 cut(s) 215, 493, 998, 1246
BseYI CCCAGC 3 cut(s) 962, 1114, 1219
Bsh1236I CGCG 1 cut(s) 247
Bsh1285I CGRYCG 1 cut(s) 763
BshFI GGCC 7 cut(s) 77, 131, 289, 362, 762, 800, 821
BshNI GGYRCC 1 cut(s) 304
BsiEI CGRYCG 1 cut(s) 763
BsiHKAI GWGCWC 3 cut(s) 330, 1099, 1107
BsiSI CCGG 3 cut(s) 421, 763, 796
BslFI GGGAC 1 cut(s) 821
BsmAI GTCTC 1 cut(s) 939
BsmFI GGGAC 1 cut(s) 821
BsmI GAATGC 1 cut(s) 835
BsnI GGCC 7 cut(s) 77, 131, 289, 362, 762, 800, 821
Bsp119I TTCGAA 1 cut(s) 970
Bsp1286I GDGCHC 4 cut(s) 268, 330, 1099, 1107
Bsp143I GATC 3 cut(s) 484, 1033, 1153
BspACI CCGC 9 cut(s) 90, 93, 256, 286, 369, 734, 927, 1084, 1207
BspANI GGCC 7 cut(s) 77, 131, 289, 362, 762, 800, 821
BspCNI CTCAG 3 cut(s) 574, 849, 1203
BspFNI CGCG 1 cut(s) 247
BspLI GGNNCC 5 cut(s) 132, 306, 361, 522, 1127
BspPI GGATC 1 cut(s) 479
BspQI GCTCTTC 1 cut(s) 180
BspT104I TTCGAA 1 cut(s) 970
BspT107I GGYRCC 1 cut(s) 304
BsrBI CCGCTC 1 cut(s) 256
BsrI ACTGG 6 cut(s) 241, 275, 285, 809, 910, 1026
BssECI CCNNGG 2 cut(s) 757, 1079
BssMI GATC 3 cut(s) 484, 1033, 1153
BssNI GRCGYC 3 cut(s) 305, 366, 810
BssT1I CCWWGG 1 cut(s) 1079
Bst2UI CCWGG 1 cut(s) 1028
Bst4CI ACNGT 4 cut(s) 455, 893, 1196, 1267
Bst6I CTCTTC 3 cut(s) 87, 180, 942
BstACI GRCGYC 3 cut(s) 305, 366, 810
BstAPI GCANNNNNTGC 2 cut(s) 908, 1111
BstBI TTCGAA 1 cut(s) 970
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 561, 836, 1005, 1211
BstDSI CCRYGG 1 cut(s) 757
BstF5I GGATG 4 cut(s) 726, 736, 1092, 1135
BstFNI CGCG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 3 cut(s) 228, 249, 307
BstKTI GATC 3 cut(s) 487, 1036, 1156
BstMAI GTCTC 1 cut(s) 939
BstMBI GATC 3 cut(s) 484, 1033, 1153
BstMCI CGRYCG 1 cut(s) 763
BstNI CCWGG 1 cut(s) 1028
BstSCI CCNGG 3 cut(s) 420, 795, 1026
BstSLI GKGCMC 1 cut(s) 1107
BstUI CGCG 1 cut(s) 247
BstV1I GCAGC 4 cut(s) 215, 493, 998, 1246
BstX2I RGATCY 2 cut(s) 1033, 1153
BstYI RGATCY 2 cut(s) 1033, 1153
BstZI CGGCCG 1 cut(s) 760
BsuI GTATCC 2 cut(s) 694, 1011
BsuRI GGCC 7 cut(s) 77, 131, 289, 362, 762, 800, 821
BtgI CCRYGG 1 cut(s) 757
BtsCI GGATG 4 cut(s) 726, 736, 1092, 1135
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 2 cut(s) 134, 268
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 3 cut(s) 228, 249, 307
Cfr13I GGNCC 7 cut(s) 130, 288, 360, 451, 765, 798, 1024
CseI GACGC 2 cut(s) 374, 818
Csp6I GTAC 2 cut(s) 355, 418
CspCI CAANNNNNGTGG 2 cut(s) 498, 533
CviAII CATG 5 cut(s) 73, 261, 817, 874, 1100
CviQI GTAC 2 cut(s) 355, 418
DdeI CTNAG 4 cut(s) 561, 836, 1005, 1211
DinI GGCGCC 1 cut(s) 306
DpnI GATC 3 cut(s) 486, 1035, 1155
DpnII GATC 3 cut(s) 484, 1033, 1153
DrdI GACNNNNNNGTC 1 cut(s) 241
DseDI GACNNNNNNGTC 1 cut(s) 241
EaeI YGGCCR 2 cut(s) 760, 819
EagI CGGCCG 1 cut(s) 760
Eam1104I CTCTTC 3 cut(s) 87, 180, 942
EarI CTCTTC 3 cut(s) 87, 180, 942
EciI GGCGGA 1 cut(s) 1099
Ecl136II GAGCTC 1 cut(s) 328
EclXI CGGCCG 1 cut(s) 760
Eco130I CCWWGG 1 cut(s) 1079
Eco24I GRGCYC 2 cut(s) 268, 330
Eco47I GGWCC 3 cut(s) 451, 765, 1024
Eco52I CGGCCG 1 cut(s) 760
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 1131
EcoRII CCWGG 1 cut(s) 1026
EcoT14I CCWWGG 1 cut(s) 1079
EcoT38I GRGCYC 2 cut(s) 268, 330
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 1079
FaeI CATG 5 cut(s) 76, 264, 820, 877, 1103
FaqI GGGAC 1 cut(s) 821
FatI CATG 5 cut(s) 72, 260, 816, 873, 1099
FauI CCCGC 2 cut(s) 249, 727
FblI GTMKAC 2 cut(s) 1203, 1286
Fnu4HI GCNGC 7 cut(s) 93, 229, 287, 369, 507, 987, 1260
FokI GGATG 4 cut(s) 733, 743, 1099, 1122
FriOI GRGCYC 2 cut(s) 268, 330
Fsp4HI GCNGC 7 cut(s) 93, 229, 287, 369, 507, 987, 1260
FspBI CTAG 1 cut(s) 717
GlaI GCGC 3 cut(s) 227, 248, 306
GluI GCNGC 7 cut(s) 93, 229, 287, 369, 507, 987, 1260
GsaI CCCAGC 3 cut(s) 966, 1118, 1223
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 7 cut(s) 77, 131, 289, 362, 762, 800, 821
HapII CCGG 3 cut(s) 421, 763, 796
HgaI GACGC 2 cut(s) 374, 818
HhaI GCGC 3 cut(s) 228, 249, 307
Hin1I GRCGYC 3 cut(s) 305, 366, 810
Hin1II CATG 5 cut(s) 76, 264, 820, 877, 1103
Hin6I GCGC 3 cut(s) 226, 247, 305
HinP1I GCGC 3 cut(s) 226, 247, 305
HindIII AAGCTT 1 cut(s) 1055
HpaII CCGG 3 cut(s) 421, 763, 796
HphI GGTGA 2 cut(s) 79, 394
Hpy166II GTNNAC 7 cut(s) 316, 541, 757, 1064, 1105, 1204, 1287
Hpy188I TCNGA 6 cut(s) 110, 166, 325, 680, 839, 1130
Hpy188III TCNNGA 4 cut(s) 488, 826, 887, 941
Hpy8I GTNNAC 7 cut(s) 316, 541, 757, 1064, 1105, 1204, 1287
Hpy99I CGWCG 2 cut(s) 152, 368
HpyAV CCTTC 3 cut(s) 38, 214, 620
HpyCH4III ACNGT 4 cut(s) 455, 893, 1196, 1267
HpyCH4V TGCA 8 cut(s) 139, 444, 509, 672, 1105, 1163, 1262, 1274
HpyF3I CTNAG 4 cut(s) 561, 836, 1005, 1211
Hsp92I GRCGYC 3 cut(s) 305, 366, 810
Hsp92II CATG 5 cut(s) 76, 264, 820, 877, 1103
HspAI GCGC 3 cut(s) 226, 247, 305
KasI GGCGCC 1 cut(s) 304
Kzo9I GATC 3 cut(s) 484, 1033, 1153
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 7 cut(s) 167, 325, 333, 390, 424, 520, 590
Lsp1109I GCAGC 4 cut(s) 215, 493, 998, 1246
LweI GCATC 5 cut(s) 258, 372, 711, 721, 1101
MaeI CTAG 1 cut(s) 717
MaeIII GTNAC 3 cut(s) 211, 860, 887
MalI GATC 3 cut(s) 486, 1035, 1155
MbiI CCGCTC 1 cut(s) 256
MboI GATC 3 cut(s) 484, 1033, 1153
MboII GAAGA 6 cut(s) 74, 197, 799, 929, 1010, 1163
MflI RGATCY 2 cut(s) 1033, 1153
MhlI GDGCHC 4 cut(s) 268, 330, 1099, 1107
MluCI AATT 7 cut(s) 431, 470, 547, 583, 691, 1131, 1184
Mly113I GGCGCC 1 cut(s) 305
MlyI GAGTC 4 cut(s) 146, 251, 941, 1167
MmeI TCCRAC 2 cut(s) 189, 480
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 3 cut(s) 421, 763, 796
MspR9I CCNGG 3 cut(s) 422, 797, 1028
Mva1269I GAATGC 1 cut(s) 835
MvaI CCWGG 1 cut(s) 1028
MvnI CGCG 1 cut(s) 247
NarI GGCGCC 1 cut(s) 305
NciI CCSGG 2 cut(s) 422, 797
NdeII GATC 3 cut(s) 484, 1033, 1153
NlaIII CATG 5 cut(s) 76, 264, 820, 877, 1103
NlaIV GGNNCC 5 cut(s) 132, 306, 361, 522, 1127
NmeAIII GCCGAG 1 cut(s) 1015
NmuCI GTSAC 1 cut(s) 887
NspV TTCGAA 1 cut(s) 970
PciSI GCTCTTC 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 329
PctI GAATGC 1 cut(s) 835
PfeI GAWTC 6 cut(s) 6, 98, 681, 840, 946, 1090
PkrI GCNGC 7 cut(s) 94, 230, 288, 370, 508, 988, 1261
PleI GAGTC 4 cut(s) 146, 250, 940, 1167
PluTI GGCGCC 1 cut(s) 308
PpsI GAGTC 4 cut(s) 146, 250, 940, 1167
PshBI ATTAAT 1 cut(s) 546
PsiI TTATAA 1 cut(s) 620
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 1026
PspFI CCCAGC 3 cut(s) 962, 1114, 1219
PspGI CCWGG 1 cut(s) 1026
PspN4I GGNNCC 5 cut(s) 132, 306, 361, 522, 1127
PspPI GGNCC 7 cut(s) 130, 288, 360, 451, 765, 798, 1024
PsuI RGATCY 2 cut(s) 1033, 1153
RsaI GTAC 2 cut(s) 356, 419
RsaNI GTAC 2 cut(s) 355, 418
RseI CAYNNNNRTG 1 cut(s) 380
SacI GAGCTC 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 7 cut(s) 93, 229, 287, 369, 507, 987, 1260
Sau3AI GATC 3 cut(s) 484, 1033, 1153
Sau96I GGNCC 7 cut(s) 130, 288, 360, 451, 765, 798, 1024
SchI GAGTC 4 cut(s) 146, 251, 941, 1167
ScrFI CCNGG 3 cut(s) 422, 797, 1028
SduI GDGCHC 4 cut(s) 268, 330, 1099, 1107
SfaNI GCATC 5 cut(s) 258, 372, 711, 721, 1101
SfoI GGCGCC 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 970
SinI GGWCC 3 cut(s) 451, 765, 1024
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 2 cut(s) 725, 941
SmoI CTYRAG 2 cut(s) 725, 941
Sse9I AATT 7 cut(s) 431, 470, 547, 583, 691, 1131, 1184
SsiI CCGC 9 cut(s) 90, 93, 256, 286, 369, 734, 927, 1084, 1207
SspDI GGCGCC 1 cut(s) 304
SspMI CTAG 1 cut(s) 717
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 3 cut(s) 420, 795, 1026
StyI CCWWGG 1 cut(s) 1079
TaaI ACNGT 4 cut(s) 455, 893, 1196, 1267
TaqI TCGA 4 cut(s) 147, 252, 275, 970
TasI AATT 7 cut(s) 431, 470, 547, 583, 691, 1131, 1184
TauI GCSGC 3 cut(s) 95, 289, 371
TfiI GAWTC 6 cut(s) 6, 98, 681, 840, 946, 1090
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 2 cut(s) 141, 275
TseFI GTSAC 1 cut(s) 887
TseI GCWGC 4 cut(s) 228, 506, 986, 1259
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 3 cut(s) 1011, 1124, 1229
TspGWI ACGGA 1 cut(s) 603
TspRI CASTG 2 cut(s) 141, 275
VneI GTGCAC 1 cut(s) 1103
VpaK11BI GGWCC 3 cut(s) 451, 765, 1024
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 4 cut(s) 431, 691, 1131, 1184
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XmiI GTMKAC 2 cut(s) 1203, 1286
XspI CTAG 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.