Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011371

Physical Location & Seq

Genomic Coordinates Reverse (-)

31442715 .. 31446576

Gene Structure 3862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1312100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3072 bp

ATGTTGCAGAGAGCTGCAAGCAATGCATATTCATGGTGGTGGGCCAGCCACATCAGAACTAAGCAATCCAAATGGCTCGAGCAGAATCTCCAAGATATGGAGGAAAAGGTACAAACTGTACTTAAACTCATTCAAGAGGATGGAGACTCCTTTGCCAAGAGAGCAGAAATGTACTTCAAAAATAGACCGGAGCTGATACAATTTGTCGAGGAAACCTACAGAGCTTACCGCTCCTTGGCTGAGCGGTATGATCACATTTCAACAGAGCTACAAAATGCCAACAACACAATCGCTTCTGTTTTCCCGGAACAAGTTCAGTTTGCGATGGATGACGAAGATGAATATCCCTCACCTAAAATGCCTAGAAGGCCTCCAGATATCTCAAAATGGAGCATCCCAGAGGTCCCCCCAAAGGGTCCTACTAAAGATTTAAGGAGTCCTCTCACGAAAACAACATCGAAAAATAAGCTGGAGCCTCAGCGATCAATGAAATCCTTGTCTGCTAAAACAGTTCCTAAATCTGGCTTGACCAAACCTCAGGCACGTGAAGAGATTGACAAGATGCAGAAACAGATTCTGTCCCTACAAACGGAGAAAGAGTTTGTAAAAAGTTCGTATGAGAATGGACTTGCAAAGTACTGGGCAATCGAGAACCAAATCAAGGGAATGCAGGAGAAAGTATGCAGCTTGCAAGATGAATTTGGTGAGGGTATGGTCATTGAAGATAACGAGGCTCGGAATTTGATGGCAGCAGCTGCTTTGAAGTCATGCCAAGATACATTGGTTGACTTGCAGGCGAAACAGGAAAGTACAGCTGAGGAAGCGAGGGTTGAGTCAAAAAGGGTTAAGGATGCCCGGAAGAACTTAGAGACTCTTAAGAACGAGTTTCATCCTGATCAAACAAATCCGGAAAATCCAAATGTAAAGGATGAATCTGTAAATGAAGAAAATGAAAAAAGCTTGGACCAGGAAGTGGACAAGGCAACTCAACAGAGACAGAAATTAGAGTTATTACGGGAGAAAATTAAGGAACACTATGACGCTGCACCCGATCCATCTCTCACTGTTTCGGAAATGGCAGATAAGATTGACGAGCTCGTGACTAAGGTGATCAGTTTAGAAAGTGCAGTTTCATCACAGACTGCCCTAGTCAAGAGATTAAGAAGCGAAAATGACGAGATTCATGAACAGATTAAAAATCTGGGAGGTGACAAGGCTACTCTCATAGGTGACAAGGAAGACTTGAGCAAAAAGCTGAAGGAATTGGAGGAAAAGCTGCATCAAGTTCAGGATCTTAACCGGAGTGTTGAAAACCAGAATGACAACCTTCAGACACATTTTACCGAAGCAACTTGCAATCTCGATCACATTTCTCATAAACTGGAAACCGTGAAGCCAGATGAGGAGGTCAAGGTCACAGGCTCATCAGAAACAAAAGAGGAATCTCTTGTGGAAACCAAGTTGCAGAAATCTCTTGAAGGAGAAGAAAATGCGGTCCATCCTGTCACTGGATCCAAGGTACTGGAGGAAGCAAAGTCAGATGAGGAACTGAAGCCTACAGTTTCACTGCAAAAAGATGAAGAACTTCCGCCTGAAGTGAGACCGTTAAAAGAGTCCACAGAACATAAGGAAATAGAAAAGTCGAATGATGGTTCTGTAAAAGCCACGGATGCTCTTATTACTTCTGCCGCGGATCAAGGAAAAGATGTTTTTCAATGCCTGGAAATTAATAATGCGGTAAATCCTGTCACTGGCTCCAGGGTAGTACAGGAAGCGAAGTCAGATGAGGAACTGAAGGCTACAGTTTCACAGCAAAAAGATGAAGAATCTCTGGATGAAGGGAGACCGTCAAAAGAGTCCACAGAACATAAGGAAATAGAAAATCCTGCTCATGGTTCTGTACAACCTACAGATGCTCTCAGTACTTCTGCTGAAAATCAAGGAAAAGATGTTTACGAATCCCCGGAAATTAATATCGAAGTTGAGGAACAATCAACAAGGAACGAAGATGAGCCAGACTGGCAGAAATTGTTTGTGCATGGGATGGAGGACAGAGAGAAGATTCTATTGACACAGTACACGATAACACTTCGGAACTACAAGGATCTGAAGAAGAAATTCAGTGAAGCAGAGAACGACCTCTTTGAAACATCAGTGCAGATGAAAGAATTGAAGAGTGCCAGTGCCATGAAGGATGAAGAGATTAAATCGTTGCATAAGAAACTGGATCTTCTGTTACAGAGTTTAGGTAAAACCAAAGACTCAGAAGAGTTTAAAGCTTTAGATCACCCGCAGACCCCAACGAGTGGTTCAGCAGATAAGAAAGAGGATGATCAATTTGAGGGAACTTCGGAAATAGAAGAAAAATTCCGTTCGAACATTGATGAACTGTTGGAGGAGAACCTGGATTTCTGGTTAAAATTTAGCACTTCATTCCACCAAGTACAACAATTCGAAACAACCGTCCAAGATTTGCAGTCTGAGATATCCAAGCTTGAGGAGAAACGAAAGAAACAAGACGGAAGTAGTCATGCAAAATATTCTATGAAATCAGATGCACGACCGATATACCAGCACCTAATGGAGATACAGACTGAACTGAATGTTTGGTTGGAAAAGGGTGCACTACTGAAAGACGAGCTGCAGTGCAGATTCAAGTCTTTGTGCAGCATTCAAGAAGAAATAACAAGGGCTTTGAAGACGAGTGCCGAGGACGGTGACTTCAAGTTTACAAGCTATCAAGCCGCAAAGTTCCAAGGCGAGATTTTAAATATGAAACAAGAGAATAACAAGGTTGCAGACGAGTTGCAAGCGGGATTGGATCATGTGAACGCACTCCAACTTGAAATAGATAAAAGTATGGCAAAGTTGAATGAGGATTACAGGCTCGCTGGATCAAAGAAGCAACCAGCTCCACAGCTAGCCCACTCTGAGAGTCGTTCCCGAGTGCCCTTACAGTCATTTATATTTGGCGTAGCACCAAAGAAGCAAAAGCGATCAATCTTCGCTGTTGTGGCCCCTGCAATGCATAAGAGATACCAAGATTCAAAAGCTAAATCATCTCAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

1024

Amino Acids

116.55

Weight (kDa)

5.11

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	11 - 84	1.7e-37	KIP1-like protein
NET2A	PF25014	230 - 464	1.1e-95	NET2A-like domain
NET2A_C	PF24918	787 - 964	7e-84	NET2A, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22560
fragaria_vesca	FvH4_1g19623
malus_domestica	MD01G1039700.v1.1 MD15G1312100.v1.1
prunus_persica	Prupe.6G201900_v2.0.a1
pyrus_communis	pycom01g06730 pycom01g06750
rosa_chinensis	RchiOBHm_Chr2g0111181
rosa_laevigata	RLG00000017871
rosa_multiflora	Rmu_co8252337.1_g000001 Rmu_sc0033572.1_g000001 Rmu_sc0033573.1_g000001 Rmu_ssc0000102.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132650
rosa_rugosa	Rorug02G0171300
rosa_samantha	Rh2AG224300 Rh2BG236000 Rh2CG227400 Rh2DG232000
rosa_wichuraiana	Rw2G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	97, 973, 2306
AccBSI	CCGCTC	2 cut(s)	231, 244
AccII	CGCG	1 cut(s)	1691
AccIII	TCCGGA	1 cut(s)	907
AclWI	GGATC	9 cut(s)	1046, 1299, 1506, 1519, 1701, 2112, 2235, 2829, 2902
AcsI	RAATTY	5 cut(s)	698, 739, 2117, 2366, 2420
AcuI	CTGAAG	6 cut(s)	1277, 1313, 1571, 1614, 1814, 2129
AcvI	CACGTG	1 cut(s)	545
AflII	CTTAAG	1 cut(s)	875
AjnI	CCWGG	4 cut(s)	966, 1719, 1757, 2403
AjuI	GAANNNNNNNTTGG	4 cut(s)	2293, 2325, 2594, 2626
Alw21I	GWGCWC	2 cut(s)	1098, 2626
Alw26I	GTCTC	5 cut(s)	138, 863, 988, 1594, 1837
Alw44I	GTGCAC	1 cut(s)	2622
AlwI	GGATC	9 cut(s)	1046, 1299, 1506, 1519, 1701, 2112, 2235, 2829, 2902
AlwNI	CAGNNNCTG	2 cut(s)	577, 755
Ama87I	CYCGRG	2 cut(s)	77, 2943
Aor13HI	TCCGGA	1 cut(s)	907
AoxI	GGCC	3 cut(s)	42, 368, 3015
ApaLI	GTGCAC	1 cut(s)	2622
ApeKI	GCWGC	9 cut(s)	14, 684, 749, 752, 755, 1043, 1276, 2641, 2667
ApoI	RAATTY	5 cut(s)	698, 739, 2117, 2366, 2420
ArsI	GACNNNNNNTTYG	2 cut(s)	2448, 2480
AseI	ATTAAT	2 cut(s)	1728, 1971
Asp700I	GAANNNNTTC	3 cut(s)	312, 1584, 2117
AspS9I	GGNCC	6 cut(s)	42, 403, 416, 964, 1495, 3016
AsuC2I	CCSGG	3 cut(s)	305, 856, 1964
AsuHPI	GGTGA	7 cut(s)	342, 716, 1120, 1220, 1241, 2279, 2729
AsuII	TTCGAA	2 cut(s)	2375, 2454
AsuNHI	GCTAGC	1 cut(s)	2920
AvaI	CYCGRG	2 cut(s)	77, 2943
AvaII	GGWCC	4 cut(s)	403, 416, 964, 1495
AxyI	CCTNAGG	1 cut(s)	537
BaeGI	GKGCMC	2 cut(s)	2626, 2952
BaeI	ACNNNNGTAYC	2 cut(s)	768, 801
BamHI	GGATCC	1 cut(s)	1511
BanII	GRGCYC	1 cut(s)	1098
BauI	CACGAG	1 cut(s)	1097
BbrPI	CACGTG	1 cut(s)	545
BbsI	GAAGAC	2 cut(s)	1245, 2705
Bbv12I	GWGCWC	2 cut(s)	1098, 2626
BbvCI	CCTCAGC	2 cut(s)	477, 816
BbvI	GCAGC	8 cut(s)	696, 742, 761, 764, 1030, 1263, 2628, 2679
BccI	CCATC	7 cut(s)	134, 319, 739, 1063, 1506, 1643, 2038
BciT130I	CCWGG	4 cut(s)	968, 1721, 1759, 2405
BclI	TGATCA	4 cut(s)	250, 895, 1110, 2332
BcnI	CCSGG	3 cut(s)	305, 856, 1964
BcoDI	GTCTC	5 cut(s)	138, 863, 988, 1594, 1837
BfaI	CTAG	3 cut(s)	363, 1148, 2921
BfmI	CTRYAG	6 cut(s)	217, 1557, 1800, 1908, 2642, 3068
BfrI	CTTAAG	1 cut(s)	875
BglI	GCCNNNNNGGC	2 cut(s)	367, 2020
BlpI	GCTNAGC	1 cut(s)	240
BmcAI	AGTACT	2 cut(s)	638, 1924
Bme1390I	CCNGG	7 cut(s)	305, 856, 968, 1721, 1759, 1964, 2405
Bme18I	GGWCC	4 cut(s)	403, 416, 964, 1495
BmeT110I	CYCGRG	2 cut(s)	77, 2943
BmgT120I	GGNCC	6 cut(s)	42, 403, 416, 964, 1495, 3016
BmiI	GGNNCC	6 cut(s)	405, 417, 474, 1513, 1756, 3018
BmrFI	CCNGG	7 cut(s)	305, 856, 968, 1721, 1759, 1964, 2405
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	7 cut(s)	402, 552, 841, 1288, 1660, 1903, 2545
BmtI	GCTAGC	1 cut(s)	2924
BmuI	ACTGGG	1 cut(s)	649
BpiI	GAAGAC	2 cut(s)	1245, 2705
BpmI	CTGGAG	4 cut(s)	357, 491, 1544, 1741
Bpu10I	CCTNAGC	2 cut(s)	477, 816
Bpu1102I	GCTNAGC	1 cut(s)	240
Bpu14I	TTCGAA	2 cut(s)	2375, 2454
BpuEI	CTTGAG	2 cut(s)	1264, 2516
BpuMI	CCSGG	3 cut(s)	305, 856, 1964
BsaAI	YACGTR	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	342
BsaI	GGTCTC	2 cut(s)	1594, 1837
BsaJI	CCNNGG	8 cut(s)	234, 1515, 1665, 1689, 1758, 1962, 2709, 2755
BsaWI	WCCGGW	3 cut(s)	187, 907, 1299
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bse1I	ACTGG	8 cut(s)	644, 1386, 1513, 1527, 1756, 2024, 2181, 2229
Bse21I	CCTNAGG	1 cut(s)	537
Bse3DI	GCAATG	2 cut(s)	28, 3030
Bse8I	GATNNNNATC	1 cut(s)	342
BseAI	TCCGGA	1 cut(s)	907
BseBI	CCWGG	4 cut(s)	968, 1721, 1759, 2405
BseDI	CCNNGG	8 cut(s)	234, 1515, 1665, 1689, 1758, 1962, 2709, 2755
BseJI	GATNNNNATC	1 cut(s)	342
BseMI	GCAATG	2 cut(s)	28, 3030
BseMII	CTCAG	8 cut(s)	231, 491, 551, 807, 1933, 2277, 2472, 2922
BseNI	ACTGG	8 cut(s)	644, 1386, 1513, 1527, 1756, 2024, 2181, 2229
BseRI	GAGGAG	3 cut(s)	1418, 2411, 2513
BseSI	GKGCMC	2 cut(s)	2626, 2952
BseXI	GCAGC	8 cut(s)	696, 742, 761, 764, 1030, 1263, 2628, 2679
BsgI	GTGCAG	5 cut(s)	1029, 1146, 2177, 2668, 2686
Bsh1236I	CGCG	1 cut(s)	1691
Bsh1285I	CGRYCG	1 cut(s)	2564
BshFI	GGCC	3 cut(s)	44, 370, 3017
BsiEI	CGRYCG	1 cut(s)	2564
BsiHKAI	GWGCWC	2 cut(s)	1098, 2626
BsiHKCI	CYCGRG	2 cut(s)	77, 2943
BsiSI	CCGG	6 cut(s)	188, 305, 856, 908, 1300, 1964
BslFI	GGGAC	2 cut(s)	389, 565
BsmAI	GTCTC	5 cut(s)	138, 863, 988, 1594, 1837
BsmFI	GGGAC	2 cut(s)	389, 565
BsmI	GAATGC	2 cut(s)	672, 2670
BsnI	GGCC	3 cut(s)	44, 370, 3017
Bso31I	GGTCTC	2 cut(s)	1594, 1837
BsoBI	CYCGRG	2 cut(s)	77, 2943
Bsp119I	TTCGAA	2 cut(s)	2375, 2454
Bsp1286I	GDGCHC	3 cut(s)	1098, 2626, 2952
Bsp13I	TCCGGA	1 cut(s)	907
Bsp1407I	TGTACA	1 cut(s)	1900
Bsp1720I	GCTNAGC	1 cut(s)	240
BspANI	GGCC	3 cut(s)	44, 370, 3017
BspCNI	CTCAG	8 cut(s)	232, 490, 550, 808, 1932, 2276, 2473, 2923
BspEI	TCCGGA	1 cut(s)	907
BspFNI	CGCG	1 cut(s)	1691
BspHI	TCATGA	1 cut(s)	1183
BspLI	GGNNCC	6 cut(s)	405, 417, 474, 1513, 1756, 3018
BspMAI	CTGCAG	1 cut(s)	2646
BspOI	GCTAGC	1 cut(s)	2924
BspPI	GGATC	9 cut(s)	1046, 1299, 1506, 1519, 1701, 2112, 2235, 2829, 2902
BspT104I	TTCGAA	2 cut(s)	2375, 2454
BspTI	CTTAAG	1 cut(s)	875
BspTNI	GGTCTC	2 cut(s)	1594, 1837
BsrBI	CCGCTC	2 cut(s)	231, 244
BsrDI	GCAATG	2 cut(s)	28, 3030
BsrGI	TGTACA	1 cut(s)	1900
BsrI	ACTGG	8 cut(s)	644, 1386, 1513, 1527, 1756, 2024, 2181, 2229
BssECI	CCNNGG	8 cut(s)	234, 1515, 1665, 1689, 1758, 1962, 2709, 2755
BssSI	CACGAG	1 cut(s)	1097
BssT1I	CCWWGG	3 cut(s)	234, 1515, 2755
Bst2BI	CACGAG	1 cut(s)	1097
Bst2UI	CCWGG	4 cut(s)	968, 1721, 1759, 2405
Bst6I	CTCTTC	4 cut(s)	543, 2168, 2193, 2262
BstAFI	CTTAAG	1 cut(s)	875
BstAPI	GCANNNNNTGC	2 cut(s)	23, 755
BstAUI	TGTACA	1 cut(s)	1900
BstBAI	YACGTR	1 cut(s)	545
BstBI	TTCGAA	2 cut(s)	2375, 2454
BstC8I	GCNNGC	7 cut(s)	19, 46, 689, 795, 2811, 2889, 2922
BstDSI	CCRYGG	2 cut(s)	1665, 1689
BstFNI	CGCG	1 cut(s)	1691
BstMAI	GTCTC	5 cut(s)	138, 863, 988, 1594, 1837
BstMCI	CGRYCG	1 cut(s)	2564
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 161, 367, 755, 821, 1670, 2020, 3014
BstNI	CCWGG	4 cut(s)	968, 1721, 1759, 2405
BstSCI	CCNGG	7 cut(s)	303, 854, 966, 1719, 1757, 1962, 2403
BstSFI	CTRYAG	6 cut(s)	217, 1557, 1800, 1908, 2642, 3068
BstSLI	GKGCMC	2 cut(s)	2626, 2952
BstUI	CGCG	1 cut(s)	1691
BstV1I	GCAGC	8 cut(s)	696, 742, 761, 764, 1030, 1263, 2628, 2679
BstV2I	GAAGAC	2 cut(s)	1245, 2705
BstX2I	RGATCY	4 cut(s)	1291, 1511, 2104, 2227
BstXI	CCANNNNNNTGG	1 cut(s)	1522
BstYI	RGATCY	4 cut(s)	1291, 1511, 2104, 2227
Bsu36I	CCTNAGG	1 cut(s)	537
BsuRI	GGCC	3 cut(s)	44, 370, 3017
BtgI	CCRYGG	2 cut(s)	1665, 1689
BtgZI	GCGATG	1 cut(s)	338
BtsI	GCAGTG	2 cut(s)	1565, 2651
BtsIMutI	CAGTG	8 cut(s)	1062, 1506, 1565, 1749, 2128, 2160, 2188, 2651
Cac8I	GCNNGC	7 cut(s)	19, 46, 689, 795, 2811, 2889, 2922
CaiI	CAGNNNCTG	2 cut(s)	577, 755
CciI	TCATGA	1 cut(s)	1183
Cfr13I	GGNCC	6 cut(s)	42, 403, 416, 964, 1495, 3016
Cfr42I	CCGCGG	1 cut(s)	1692
CseI	GACGC	1 cut(s)	1049
CviAII	CATG	8 cut(s)	33, 768, 1184, 1892, 2039, 2188, 2531, 2825
DraI	TTTAAA	2 cut(s)	2275, 2769
Eam1104I	CTCTTC	4 cut(s)	543, 2168, 2193, 2262
EarI	CTCTTC	4 cut(s)	543, 2168, 2193, 2262
EciI	GGCGGA	1 cut(s)	1578
Ecl136II	GAGCTC	1 cut(s)	1096
Eco130I	CCWWGG	3 cut(s)	234, 1515, 2755
Eco147I	AGGCCT	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	1098
Eco31I	GGTCTC	2 cut(s)	1594, 1837
Eco32I	GATATC	2 cut(s)	379, 2487
Eco47I	GGWCC	4 cut(s)	403, 416, 964, 1495
Eco53kI	GAGCTC	1 cut(s)	1096
Eco57I	CTGAAG	6 cut(s)	1277, 1313, 1571, 1614, 1814, 2129
Eco72I	CACGTG	1 cut(s)	545
Eco81I	CCTNAGG	1 cut(s)	537
Eco88I	CYCGRG	2 cut(s)	77, 2943
EcoICRI	GAGCTC	1 cut(s)	1096
EcoO109I	RGGNCCY	2 cut(s)	403, 416
EcoRII	CCWGG	4 cut(s)	966, 1719, 1757, 2403
EcoRV	GATATC	2 cut(s)	379, 2487
EcoT14I	CCWWGG	3 cut(s)	234, 1515, 2755
EcoT22I	ATGCAT	2 cut(s)	28, 3030
EcoT38I	GRGCYC	1 cut(s)	1098
ErhI	CCWWGG	3 cut(s)	234, 1515, 2755
FaeI	CATG	8 cut(s)	36, 771, 1187, 1895, 2042, 2191, 2534, 2828
FalI	AAGNNNNNCTT	2 cut(s)	1226, 1258
FaqI	GGGAC	2 cut(s)	389, 565
FatI	CATG	8 cut(s)	32, 767, 1183, 1891, 2038, 2187, 2530, 2824
FauI	CCCGC	2 cut(s)	2298, 2806
FbaI	TGATCA	4 cut(s)	250, 895, 1110, 2332
FriOI	GRGCYC	1 cut(s)	1098
FspBI	CTAG	3 cut(s)	363, 1148, 2921
GsuI	CTGGAG	4 cut(s)	357, 491, 1544, 1741
HaeIII	GGCC	3 cut(s)	44, 370, 3017
HapII	CCGG	6 cut(s)	188, 305, 856, 908, 1300, 1964
HgaI	GACGC	1 cut(s)	1049
Hin1II	CATG	8 cut(s)	36, 771, 1187, 1895, 2042, 2191, 2534, 2828
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HindIII	AAGCTT	3 cut(s)	958, 2277, 2492
HpaII	CCGG	6 cut(s)	188, 305, 856, 908, 1300, 1964
HphI	GGTGA	7 cut(s)	342, 716, 1120, 1220, 1241, 2279, 2729
Hpy166II	GTNNAC	9 cut(s)	787, 976, 1617, 1860, 1954, 2079, 2624, 2730, 2830
Hpy8I	GTNNAC	9 cut(s)	787, 976, 1617, 1860, 1954, 2079, 2624, 2730, 2830
HpyAV	CCTTC	7 cut(s)	360, 1252, 1337, 1472, 1789, 1832, 2185
HpyCH4IV	ACGT	1 cut(s)	544
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 161, 367, 755, 821, 1670, 2020, 3014
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	8 cut(s)	36, 771, 1187, 1895, 2042, 2191, 2534, 2828
Kpn2I	TCCGGA	1 cut(s)	907
Ksp22I	TGATCA	4 cut(s)	250, 895, 1110, 2332
KspI	CCGCGG	1 cut(s)	1692
LmnI	GCTCC	6 cut(s)	190, 236, 390, 472, 1760, 2917
Lsp1109I	GCAGC	8 cut(s)	696, 742, 761, 764, 1030, 1263, 2628, 2679
LweI	GCATC	7 cut(s)	402, 552, 841, 1288, 1660, 1903, 2545
MaeI	CTAG	3 cut(s)	363, 1148, 2921
MaeII	ACGT	1 cut(s)	544
MaeIII	GTNAC	8 cut(s)	1099, 1208, 1229, 1414, 1504, 1747, 2235, 2717
MbiI	CCGCTC	2 cut(s)	231, 244
MflI	RGATCY	4 cut(s)	1291, 1511, 2104, 2227
MhlI	GDGCHC	3 cut(s)	1098, 2626, 2952
MlyI	GAGTC	8 cut(s)	140, 445, 842, 865, 1622, 1865, 2255, 2944
MmeI	TCCRAC	3 cut(s)	2373, 2592, 2863
Mph1103I	ATGCAT	2 cut(s)	28, 3030
MroI	TCCGGA	1 cut(s)	907
MroXI	GAANNNNTTC	3 cut(s)	312, 1584, 2117
MslI	CAYNNNNRTG	2 cut(s)	31, 37
MspA1I	CMGCKG	4 cut(s)	755, 815, 1691, 3067
MspCI	CTTAAG	1 cut(s)	875
MspI	CCGG	6 cut(s)	188, 305, 856, 908, 1300, 1964
MspR9I	CCNGG	7 cut(s)	305, 856, 968, 1721, 1759, 1964, 2405
Mva1269I	GAATGC	2 cut(s)	672, 2670
MvaI	CCWGG	4 cut(s)	968, 1721, 1759, 2405
MvnI	CGCG	1 cut(s)	1691
MwoI	GCNNNNNNNGC	8 cut(s)	23, 161, 367, 755, 821, 1670, 2020, 3014
NciI	CCSGG	3 cut(s)	305, 856, 1964
NheI	GCTAGC	1 cut(s)	2920
NlaIII	CATG	8 cut(s)	36, 771, 1187, 1895, 2042, 2191, 2534, 2828
NlaIV	GGNNCC	6 cut(s)	405, 417, 474, 1513, 1756, 3018
NmeAIII	GCCGAG	1 cut(s)	2734
NmuCI	GTSAC	7 cut(s)	1099, 1208, 1229, 1414, 1504, 1747, 2717
NsiI	ATGCAT	2 cut(s)	28, 3030
NspV	TTCGAA	2 cut(s)	2375, 2454
PaeR7I	CTCGAG	1 cut(s)	77
PagI	TCATGA	1 cut(s)	1183
PceI	AGGCCT	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	2 cut(s)	1047, 2460
PctI	GAATGC	2 cut(s)	672, 2670
PdmI	GAANNNNTTC	3 cut(s)	312, 1584, 2117
PflMI	CCANNNNNTGG	3 cut(s)	97, 973, 2306
PfoI	TCCNGGA	1 cut(s)	303
PleI	GAGTC	8 cut(s)	140, 444, 841, 865, 1621, 1864, 2255, 2943
PmaCI	CACGTG	1 cut(s)	545
PmlI	CACGTG	1 cut(s)	545
PpsI	GAGTC	8 cut(s)	140, 444, 841, 865, 1621, 1864, 2255, 2943
Ppu21I	YACGTR	1 cut(s)	545
PpuMI	RGGWCCY	2 cut(s)	403, 416
PshBI	ATTAAT	2 cut(s)	1728, 1971
Psp124BI	GAGCTC	1 cut(s)	1098
Psp5II	RGGWCCY	2 cut(s)	403, 416
Psp6I	CCWGG	4 cut(s)	966, 1719, 1757, 2403
PspCI	CACGTG	1 cut(s)	545
PspGI	CCWGG	4 cut(s)	966, 1719, 1757, 2403
PspN4I	GGNNCC	6 cut(s)	405, 417, 474, 1513, 1756, 3018
PspPI	GGNCC	6 cut(s)	42, 403, 416, 964, 1495, 3016
PspPPI	RGGWCCY	2 cut(s)	403, 416
PspXI	VCTCGAGB	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	2646
PstNI	CAGNNNCTG	2 cut(s)	577, 755
PsuI	RGATCY	4 cut(s)	1291, 1511, 2104, 2227
PvuII	CAGCTG	3 cut(s)	755, 815, 3067
RseI	CAYNNNNRTG	2 cut(s)	31, 37
SacI	GAGCTC	1 cut(s)	1098
SacII	CCGCGG	1 cut(s)	1692
Sau96I	GGNCC	6 cut(s)	42, 403, 416, 964, 1495, 3016
ScaI	AGTACT	2 cut(s)	638, 1924
SchI	GAGTC	8 cut(s)	140, 445, 842, 865, 1622, 1865, 2255, 2944
ScrFI	CCNGG	7 cut(s)	305, 856, 968, 1721, 1759, 1964, 2405
SduI	GDGCHC	3 cut(s)	1098, 2626, 2952
SfaNI	GCATC	7 cut(s)	402, 552, 841, 1288, 1660, 1903, 2545
SfcI	CTRYAG	6 cut(s)	217, 1557, 1800, 1908, 2642, 3068
Sfr274I	CTCGAG	1 cut(s)	77
Sfr303I	CCGCGG	1 cut(s)	1692
SfuI	TTCGAA	2 cut(s)	2375, 2454
SgrBI	CCGCGG	1 cut(s)	1692
SinI	GGWCC	4 cut(s)	403, 416, 964, 1495
SlaI	CTCGAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	2 cut(s)	31, 37
SmlI	CTYRAG	4 cut(s)	77, 875, 1243, 2495
SmoI	CTYRAG	4 cut(s)	77, 875, 1243, 2495
SseBI	AGGCCT	1 cut(s)	370
SspI	AATATT	1 cut(s)	2540
SspMI	CTAG	3 cut(s)	363, 1148, 2921
SstI	GAGCTC	1 cut(s)	1098
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	7 cut(s)	303, 854, 966, 1719, 1757, 1962, 2403
StyI	CCWWGG	3 cut(s)	234, 1515, 2755
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	9 cut(s)	78, 207, 458, 648, 1362, 1643, 1977, 2375, 2454
TaqII	GACCGA	1 cut(s)	2578
TatI	WGTACW	9 cut(s)	118, 171, 636, 809, 1765, 1900, 1922, 2076, 2443
TauI	GCSGC	2 cut(s)	1691, 2747
TscAI	CASTG	8 cut(s)	1069, 1513, 1572, 1756, 2128, 2160, 2188, 2651
TseFI	GTSAC	7 cut(s)	1099, 1208, 1229, 1414, 1504, 1747, 2717
TseI	GCWGC	9 cut(s)	14, 684, 749, 752, 755, 1043, 1276, 2641, 2667
Tsp45I	GTSAC	7 cut(s)	1099, 1208, 1229, 1414, 1504, 1747, 2717
TspGWI	ACGGA	4 cut(s)	605, 1682, 2360, 2535
TspRI	CASTG	8 cut(s)	1069, 1513, 1572, 1756, 2128, 2160, 2188, 2651
Van91I	CCANNNNNTGG	3 cut(s)	97, 973, 2306
Vha464I	CTTAAG	1 cut(s)	875
VneI	GTGCAC	1 cut(s)	2622
VpaK11BI	GGWCC	4 cut(s)	403, 416, 964, 1495
VspI	ATTAAT	2 cut(s)	1728, 1971
XapI	RAATTY	5 cut(s)	698, 739, 2117, 2366, 2420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1505
XhoI	CTCGAG	1 cut(s)	77
XmnI	GAANNNNTTC	3 cut(s)	312, 1584, 2117
XspI	CTAG	3 cut(s)	363, 1148, 2921
ZrmI	AGTACT	2 cut(s)	638, 1924
Zsp2I	ATGCAT	2 cut(s)	28, 3030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.