pycom01g06730

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011371
Physical Location & Seq
Forward (+)
7243421 .. 7245085
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06730.2

Sequence Viewer

Length: 1176 bp
ATGTTGCAGAGAGCTGCAAGCAATGCATATTCATGGTGGTGGGCCAGCCACATCAGAACTAAGCAATCCAAATGGCTCGATCGAAACCTCCAAGATATGGAGGAAAAGGTGCAGAGTGTGCTTAAACTCATTGAAGAGGATGGAGACTCCTTTGCCAAGAGAGCAGAAATGTACTTCAAAAATAGACCGGAGCTGATACACTTCGTCGAAGAAACATACAGAGCTTACCGGTCCTTGGCTGAGCGATATGATCACATTTCAACAGAGCTACAAAATGCCAACAACACAATCGCTTCTGTTTTCCCGGAACAAGTTCAGTTTGCCATGGATGACGAAGATGAATATCCCTCGACTAAAACGCCTAGGAGGCCTCCAGATATCTCAAAAGGGAACATCCCAAACGTTCCCCCGAAGGGTCCTACTAAAGATTTAAGGAGTCTTCTCACGAAAGCAACAGAGAAAAATAAGCTGCAGCCTCAGCGATCAATGAAATCGACGTCTGCTAAAACAGTTCCTAAATCCGGCTTGACTAAACCTCAGGCACGTGAAGAGATTGACAAGACGCAGAAACAGATTCTGTCCCTACAAACAGAGAAAGAGTTTGTAAAGAGTTCGTACGAGAATGGACTTGCCAAGTACTGGGAAATTGAGAACCAAATAAAGGGATTGCAGGAGAAAGTATGCGTTTTGCAAGATGAATTTGGTGATGGAACGGTCATTGAAGATAATGAGGCTCGGAATTTGATGGCAGCAGCTGCTTTAAAGTCATGCCAACAGACATTGGTTGAATTGCAGGCAAAACAGGAAACTACAGCTGAGGAAGCGAGGGTTGAGTCGAAAAGGGTTAAGGATGCCCGGAAGAACTTAGAGACTCTTAAGAATGAGTTTCATCCTGATCAACCCAATCCGGAAAAGCCAAATGCAAAGGATGAATCTGTAAATGCAGCAAATGAGAAAAGCTTGGACCAGGAAGTGGACAAGGCAGCCCATCAGAAGCAGAAATTAGAGTTGTTACGGGAGAAAATTAAGGAACACTATGACGCCGCACCAGATTCATCTCTCACTGTTGCGGAAATGGCAGAAAAGATTGACGAGCTCGTGACTAAGGTCGATCAGTTTAGAGAGTGCAGTTTCATCACAGACTGCTCTAGTCAAGAGACTAAGAAGCGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

392

Amino Acids

44.91

Weight (kDa)

5.91

Isoelectric Point (pI)

56.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 500
AccB7I CCANNNNNTGG 3 cut(s) 97, 639, 973
AccIII TCCGGA 1 cut(s) 907
AciI CCGC 2 cut(s) 1044, 1070
AclI AACGTT 1 cut(s) 402
AcsI RAATTY 2 cut(s) 698, 739
AcvI CACGTG 1 cut(s) 545
AcyI GRCGYC 2 cut(s) 497, 1041
AfaI GTAC 3 cut(s) 173, 617, 638
AfiI CCNNNNNNNGG 7 cut(s) 97, 235, 413, 521, 639, 661, 973
AflII CTTAAG 1 cut(s) 875
AgeI ACCGGT 1 cut(s) 228
AgsI TTSAA 5 cut(s) 134, 178, 261, 722, 788
AjnI CCWGG 1 cut(s) 966
AluBI AGCT 9 cut(s) 14, 193, 224, 268, 469, 755, 815, 960, 1096
AluI AGCT 9 cut(s) 14, 193, 224, 268, 469, 755, 815, 960, 1096
Alw21I GWGCWC 1 cut(s) 1098
Alw26I GTCTC 3 cut(s) 138, 863, 1151
AlwNI CAGNNNCTG 2 cut(s) 577, 755
Aor13HI TCCGGA 1 cut(s) 907
AoxI GGCC 2 cut(s) 42, 368
ApeKI GCWGC 8 cut(s) 14, 469, 472, 749, 752, 755, 944, 983
ApoI RAATTY 2 cut(s) 698, 739
AsiGI ACCGGT 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 312
AspA2I CCTAGG 1 cut(s) 362
AspS9I GGNCC 4 cut(s) 42, 231, 416, 964
AsuC2I CCSGG 2 cut(s) 305, 856
AsuHPI GGTGA 1 cut(s) 716
AvaII GGWCC 3 cut(s) 231, 416, 964
AvrII CCTAGG 1 cut(s) 362
AxyI CCTNAGG 1 cut(s) 537
BanII GRGCYC 1 cut(s) 1098
BauI CACGAG 1 cut(s) 1097
BbrPI CACGTG 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 1098
BbvCI CCTCAGC 2 cut(s) 477, 816
BbvI GCAGC 7 cut(s) 456, 484, 742, 761, 764, 956, 995
BccI CCATC 4 cut(s) 134, 701, 739, 996
BciT130I CCWGG 1 cut(s) 968
BclI TGATCA 2 cut(s) 250, 895
BcnI CCSGG 2 cut(s) 305, 856
BcoDI GTCTC 3 cut(s) 138, 863, 1151
BfaI CTAG 2 cut(s) 363, 1149
BfmI CTRYAG 2 cut(s) 470, 810
BfrI CTTAAG 1 cut(s) 875
BglI GCCNNNNNGGC 1 cut(s) 367
BisI GCNGC 9 cut(s) 15, 470, 473, 750, 753, 756, 945, 984, 1044
BlnI CCTAGG 1 cut(s) 362
BlpI GCTNAGC 1 cut(s) 240
BlsI GCNGC 9 cut(s) 16, 471, 474, 751, 754, 757, 946, 985, 1045
BmcAI AGTACT 1 cut(s) 638
Bme1390I CCNGG 3 cut(s) 305, 856, 968
Bme18I GGWCC 3 cut(s) 231, 416, 964
BmgT120I GGNCC 4 cut(s) 42, 231, 416, 964
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 3 cut(s) 305, 856, 968
BmrI ACTGGG 1 cut(s) 649
BmsI GCATC 1 cut(s) 841
BmuI ACTGGG 1 cut(s) 649
BoxI GACNNNNGTC 1 cut(s) 1106
BpiI GAAGAC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 357
Bpu10I CCTNAGC 2 cut(s) 477, 816
Bpu1102I GCTNAGC 1 cut(s) 240
BpuMI CCSGG 2 cut(s) 305, 856
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 342
BsaHI GRCGYC 2 cut(s) 497, 1041
BsaJI CCNNGG 3 cut(s) 234, 324, 362
BsaWI WCCGGW 3 cut(s) 187, 228, 907
Bsc4I CCNNNNNNNGG 7 cut(s) 97, 235, 413, 521, 639, 661, 973
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 644
Bse21I CCTNAGG 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 342
BseAI TCCGGA 1 cut(s) 907
BseBI CCWGG 1 cut(s) 968
BseDI CCNNGG 3 cut(s) 234, 324, 362
BseGI GGATG 6 cut(s) 145, 334, 393, 856, 889, 934
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 7 cut(s) 97, 235, 413, 521, 639, 661, 973
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 4 cut(s) 231, 491, 551, 807
BseNI ACTGG 1 cut(s) 644
BseXI GCAGC 7 cut(s) 456, 484, 742, 761, 764, 956, 995
BsgI GTGCAG 2 cut(s) 131, 1147
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 44, 370
BshTI ACCGGT 1 cut(s) 228
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 1098
BsiSI CCGG 6 cut(s) 188, 229, 305, 522, 856, 908
BsiWI CGTACG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 7 cut(s) 97, 235, 413, 521, 639, 661, 973
BsmAI GTCTC 3 cut(s) 138, 863, 1151
BsmFI GGGAC 1 cut(s) 565
BsnI GGCC 2 cut(s) 44, 370
Bsp1286I GDGCHC 1 cut(s) 1098
Bsp13I TCCGGA 1 cut(s) 907
Bsp143I GATC 5 cut(s) 79, 250, 482, 895, 1111
Bsp1720I GCTNAGC 1 cut(s) 240
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 2 cut(s) 1044, 1070
BspANI GGCC 2 cut(s) 44, 370
BspCNI CTCAG 4 cut(s) 232, 490, 550, 808
BspEI TCCGGA 1 cut(s) 907
BspLI GGNNCC 1 cut(s) 417
BspMAI CTGCAG 1 cut(s) 474
BspTI CTTAAG 1 cut(s) 875
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 1 cut(s) 644
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 3 cut(s) 234, 324, 362
BssMI GATC 5 cut(s) 79, 250, 482, 895, 1111
BssNI GRCGYC 2 cut(s) 497, 1041
BssSI CACGAG 1 cut(s) 1097
BssT1I CCWWGG 3 cut(s) 234, 324, 362
Bst2BI CACGAG 1 cut(s) 1097
Bst2UI CCWGG 1 cut(s) 968
Bst4CI ACNGT 3 cut(s) 511, 715, 1066
Bst6I CTCTTC 2 cut(s) 129, 543
BstACI GRCGYC 2 cut(s) 497, 1041
BstAFI CTTAAG 1 cut(s) 875
BstAPI GCANNNNNTGC 3 cut(s) 23, 118, 755
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 3 cut(s) 19, 46, 795
BstDEI CTNAG 8 cut(s) 60, 240, 477, 537, 816, 865, 1104, 1161
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 6 cut(s) 145, 334, 393, 856, 889, 934
BstKTI GATC 5 cut(s) 82, 253, 485, 898, 1114
BstMAI GTCTC 3 cut(s) 138, 863, 1151
BstMBI GATC 5 cut(s) 79, 250, 482, 895, 1111
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 8 cut(s) 23, 118, 161, 367, 478, 755, 821, 1076
BstNI CCWGG 1 cut(s) 968
BstPAI GACNNNNGTC 1 cut(s) 1106
BstSCI CCNGG 3 cut(s) 303, 854, 966
BstSFI CTRYAG 2 cut(s) 470, 810
BstV1I GCAGC 7 cut(s) 456, 484, 742, 761, 764, 956, 995
BstV2I GAAGAC 1 cut(s) 431
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 2 cut(s) 44, 370
BtgI CCRYGG 1 cut(s) 324
BtsCI GGATG 6 cut(s) 145, 334, 393, 856, 889, 934
BtsIMutI CAGTG 1 cut(s) 1062
Cac8I GCNNGC 3 cut(s) 19, 46, 795
CaiI CAGNNNCTG 2 cut(s) 577, 755
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 4 cut(s) 42, 231, 416, 964
CseI GACGC 2 cut(s) 571, 1049
Csp6I GTAC 3 cut(s) 172, 616, 637
CspAI ACCGGT 1 cut(s) 228
CviAII CATG 3 cut(s) 33, 325, 768
CviQI GTAC 3 cut(s) 172, 616, 637
DdeI CTNAG 8 cut(s) 60, 240, 477, 537, 816, 865, 1104, 1161
DpnI GATC 5 cut(s) 81, 252, 484, 897, 1113
DpnII GATC 5 cut(s) 79, 250, 482, 895, 1111
DraI TTTAAA 1 cut(s) 762
Eam1104I CTCTTC 2 cut(s) 129, 543
EarI CTCTTC 2 cut(s) 129, 543
Ecl136II GAGCTC 1 cut(s) 1096
Eco130I CCWWGG 3 cut(s) 234, 324, 362
Eco147I AGGCCT 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 1098
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 3 cut(s) 231, 416, 964
Eco53kI GAGCTC 1 cut(s) 1096
Eco72I CACGTG 1 cut(s) 545
Eco81I CCTNAGG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 1096
EcoO109I RGGNCCY 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 966
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 3 cut(s) 234, 324, 362
EcoT22I ATGCAT 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 1098
ErhI CCWWGG 3 cut(s) 234, 324, 362
FaeI CATG 3 cut(s) 36, 328, 771
FaiI YATR 9 cut(s) 28, 34, 98, 217, 249, 326, 682, 769, 1038
FaqI GGGAC 1 cut(s) 565
FatI CATG 3 cut(s) 32, 324, 767
FbaI TGATCA 2 cut(s) 250, 895
Fnu4HI GCNGC 9 cut(s) 15, 470, 473, 750, 753, 756, 945, 984, 1044
FokI GGATG 6 cut(s) 152, 341, 380, 863, 876, 941
FriOI GRGCYC 1 cut(s) 1098
Fsp4HI GCNGC 9 cut(s) 15, 470, 473, 750, 753, 756, 945, 984, 1044
FspBI CTAG 2 cut(s) 363, 1149
GluI GCNGC 9 cut(s) 15, 470, 473, 750, 753, 756, 945, 984, 1044
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 2 cut(s) 44, 370
HapII CCGG 6 cut(s) 188, 229, 305, 522, 856, 908
HgaI GACGC 2 cut(s) 571, 1049
Hin1I GRCGYC 2 cut(s) 497, 1041
Hin1II CATG 3 cut(s) 36, 328, 771
HindIII AAGCTT 1 cut(s) 958
HinfI GANTC 7 cut(s) 146, 436, 574, 833, 871, 932, 1052
HpaII CCGG 6 cut(s) 188, 229, 305, 522, 856, 908
HphI GGTGA 1 cut(s) 716
Hpy166II GTNNAC 1 cut(s) 976
Hpy188I TCNGA 3 cut(s) 56, 738, 993
Hpy188III TCNNGA 6 cut(s) 374, 445, 893, 908, 1099, 1154
Hpy8I GTNNAC 1 cut(s) 976
Hpy99I CGWCG 2 cut(s) 209, 499
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 3 cut(s) 511, 715, 1066
HpyCH4IV ACGT 3 cut(s) 402, 497, 544
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 118, 161, 367, 478, 755, 821, 1076
HpyF3I CTNAG 8 cut(s) 60, 240, 477, 537, 816, 865, 1104, 1161
HpySE526I ACGT 3 cut(s) 402, 497, 544
Hsp92I GRCGYC 2 cut(s) 497, 1041
Hsp92II CATG 3 cut(s) 36, 328, 771
Kpn2I TCCGGA 1 cut(s) 907
Ksp22I TGATCA 2 cut(s) 250, 895
Kzo9I GATC 5 cut(s) 79, 250, 482, 895, 1111
LmnI GCTCC 1 cut(s) 190
Lsp1109I GCAGC 7 cut(s) 456, 484, 742, 761, 764, 956, 995
LweI GCATC 1 cut(s) 841
MaeI CTAG 2 cut(s) 363, 1149
MaeII ACGT 3 cut(s) 402, 497, 544
MaeIII GTNAC 2 cut(s) 1011, 1099
MalI GATC 5 cut(s) 81, 252, 484, 897, 1113
MboI GATC 5 cut(s) 79, 250, 482, 895, 1111
MboII GAAGA 7 cut(s) 146, 221, 347, 431, 560, 734, 871
MhlI GDGCHC 1 cut(s) 1098
MluCI AATT 6 cut(s) 645, 698, 739, 788, 1001, 1023
MlyI GAGTC 4 cut(s) 140, 445, 842, 865
Mph1103I ATGCAT 1 cut(s) 28
MroI TCCGGA 1 cut(s) 907
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 6 cut(s) 123, 431, 761, 846, 876, 1026
MslI CAYNNNNRTG 2 cut(s) 31, 37
MspA1I CMGCKG 2 cut(s) 755, 815
MspCI CTTAAG 1 cut(s) 875
MspI CCGG 6 cut(s) 188, 229, 305, 522, 856, 908
MspR9I CCNGG 3 cut(s) 305, 856, 968
MvaI CCWGG 1 cut(s) 968
MwoI GCNNNNNNNGC 8 cut(s) 23, 118, 161, 367, 478, 755, 821, 1076
NciI CCSGG 2 cut(s) 305, 856
NcoI CCATGG 1 cut(s) 324
NdeII GATC 5 cut(s) 79, 250, 482, 895, 1111
NlaIII CATG 3 cut(s) 36, 328, 771
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 1099
NsiI ATGCAT 1 cut(s) 28
PceI AGGCCT 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 3 cut(s) 574, 932, 1052
Pfl23II CGTACG 1 cut(s) 615
PflMI CCANNNNNTGG 3 cut(s) 97, 639, 973
PfoI TCCNGGA 1 cut(s) 303
PinAI ACCGGT 1 cut(s) 228
PkrI GCNGC 9 cut(s) 16, 471, 474, 751, 754, 757, 946, 985, 1045
Ple19I CGATCG 1 cut(s) 82
PleI GAGTC 4 cut(s) 140, 444, 841, 865
PmaCI CACGTG 1 cut(s) 545
PmlI CACGTG 1 cut(s) 545
PpsI GAGTC 4 cut(s) 140, 444, 841, 865
Ppu21I YACGTR 1 cut(s) 545
PpuMI RGGWCCY 1 cut(s) 416
PshAI GACNNNNGTC 1 cut(s) 1106
Psp124BI GAGCTC 1 cut(s) 1098
Psp1406I AACGTT 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 966
PspCI CACGTG 1 cut(s) 545
PspGI CCWGG 1 cut(s) 966
PspLI CGTACG 1 cut(s) 615
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 4 cut(s) 42, 231, 416, 964
PspPPI RGGWCCY 1 cut(s) 416
PstI CTGCAG 1 cut(s) 474
PstNI CAGNNNCTG 2 cut(s) 577, 755
PvuI CGATCG 1 cut(s) 82
PvuII CAGCTG 2 cut(s) 755, 815
RsaI GTAC 3 cut(s) 173, 617, 638
RsaNI GTAC 3 cut(s) 172, 616, 637
RseI CAYNNNNRTG 2 cut(s) 31, 37
SacI GAGCTC 1 cut(s) 1098
SaqAI TTAA 6 cut(s) 123, 431, 761, 846, 876, 1026
SatI GCNGC 9 cut(s) 15, 470, 473, 750, 753, 756, 945, 984, 1044
Sau3AI GATC 5 cut(s) 79, 250, 482, 895, 1111
Sau96I GGNCC 4 cut(s) 42, 231, 416, 964
ScaI AGTACT 1 cut(s) 638
SchI GAGTC 4 cut(s) 140, 445, 842, 865
ScrFI CCNGG 3 cut(s) 305, 856, 968
SduI GDGCHC 1 cut(s) 1098
SfaNI GCATC 1 cut(s) 841
SfcI CTRYAG 2 cut(s) 470, 810
SinI GGWCC 3 cut(s) 231, 416, 964
SmiMI CAYNNNNRTG 2 cut(s) 31, 37
SmlI CTYRAG 1 cut(s) 875
SmoI CTYRAG 1 cut(s) 875
Sse9I AATT 6 cut(s) 645, 698, 739, 788, 1001, 1023
SseBI AGGCCT 1 cut(s) 370
SsiI CCGC 2 cut(s) 1044, 1070
SspMI CTAG 2 cut(s) 363, 1149
SstI GAGCTC 1 cut(s) 1098
StuI AGGCCT 1 cut(s) 370
StyD4I CCNGG 3 cut(s) 303, 854, 966
StyI CCWWGG 3 cut(s) 234, 324, 362
TaaI ACNGT 3 cut(s) 511, 715, 1066
TaiI ACGT 3 cut(s) 405, 500, 547
TaqI TCGA 7 cut(s) 78, 82, 207, 350, 494, 836, 1110
TasI AATT 6 cut(s) 645, 698, 739, 788, 1001, 1023
TatI WGTACW 2 cut(s) 171, 636
TauI GCSGC 1 cut(s) 1046
TfiI GAWTC 3 cut(s) 574, 932, 1052
Tru1I TTAA 6 cut(s) 123, 431, 761, 846, 876, 1026
Tru9I TTAA 6 cut(s) 123, 431, 761, 846, 876, 1026
TscAI CASTG 1 cut(s) 1069
TseFI GTSAC 1 cut(s) 1099
TseI GCWGC 8 cut(s) 14, 469, 472, 749, 752, 755, 944, 983
Tsp45I GTSAC 1 cut(s) 1099
TspDTI ATGAA 8 cut(s) 21, 354, 503, 711, 878, 945, 1044, 1123
TspRI CASTG 1 cut(s) 1069
Van91I CCANNNNNTGG 3 cut(s) 97, 639, 973
Vha464I CTTAAG 1 cut(s) 875
VpaK11BI GGWCC 3 cut(s) 231, 416, 964
XapI RAATTY 2 cut(s) 698, 739
XmaJI CCTAGG 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 2 cut(s) 363, 1149
ZraI GACGTC 1 cut(s) 498
ZrmI AGTACT 1 cut(s) 638
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.