pycom01g06750

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011371
Physical Location & Seq
Forward (+)
7246179 .. 7247369
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06750.1

Sequence Viewer

Length: 1191 bp
ATGGAGGGCAGAGAAAAGATTCTATTGACAGAGTACACGATAACTCTTAGGAACTACAAGGATCTGAAGAAGAAGTTCAGCGAAGCAGAGAACGATCTCTTTGAAACATCAGTGCAGATAAAAGAACTGAAGAGTGCCAGTGCCATGAAAGATGAAGAGATTAAATCATTGCATAAGAAACTGGATCTTCTGCTACAGAGTTTAGGTAAAAGTAAAGACTCAGAAGAGCTTAAAGCTTTAGATACCCAGCAGACCCCGACAAGTATTTCAGCAGATAGGAAAGAGGATGACGAATTTGAGGGAACTTCAGAAATAGAAGAAAAATTCCGATCGAACATTGATGAACTGTTGGAGGAGAACTTGGATTTCTGGTTAAAATTTAGCGCTTCATTCCACCAAGTACAACAATTTGAAACTACCGTCCAAGATTTGCAGTCTGAGATATCCAAGCTTGAGGAGAAAACTAAGAAACAAGACGGAAGTAGTCATGCAAAATATTCTATGAAATCAGATGCACGACCAATATACAAGCACCTAATGGAGATACAAACTGAACTGAATGTTTGGTTGGAAAAGGGTGCGCTACTGAAGGACGAACTGCAGTGCAGATTCACGTCTTTGTGCGACATTCAAGAAGAAATAACAAAGGCTCTGAAGACAAGTGCTGAGGATGGTGACTTCAAGTTTACAAGCTACCAAGCTGCAAAGTTCCAAGGCGAAATTTTAAATATGAAACAAGAGAATAACAAGGTTGCAGATGAGTTGCAAGCAGGATTGGATCATGTTAACGCACTCCAAATTGAAATAGAGAAAACTATGGCAAAATTGAACGAGGATTACAGGCTCGTTGGATCAAAGAAGCAACCGCCTCCACAGCTGGCTCACTCTGAGAGTCGTTCACGAGTTCCCTTGAGGTCATTTATATTTGGCGTCACACCAAAGAAGCAAAAGCGATCAATCTTCTCCGTTGTGGCCCCTGCAATGCATAAGAGATACCAAGATTCAAAAGCTAAGTCATCTCAGCTGATAGATCGTTTCATTGTGTGCATTTTGTTTTCTTTGCTTTCGTTTCCACTTTTGAACAGCATTTCGACAGATTTCCTCCATTTTTCCTTTTCTTTTAGGTCTCCTTCCTTTTCGGGATTTTTTTTTTTCTTTAATCCTCTCTTTCTGGGAGAGCATGTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

397

Amino Acids

45.64

Weight (kDa)

5.85

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NET2A_C PF24918 106 - 283 2.3e-85 NET2A, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 866
AclWI GGATC 4 cut(s) 69, 192, 786, 859
AcsI RAATTY 4 cut(s) 293, 323, 377, 720
AcuI CTGAAG 5 cut(s) 86, 149, 291, 608, 674
AcyI GRCGYC 1 cut(s) 930
AfaI GTAC 2 cut(s) 35, 402
AfeI AGCGCT 1 cut(s) 385
AgsI TTSAA 8 cut(s) 104, 413, 632, 682, 803, 829, 1005, 1081
AjiI CACGTC 1 cut(s) 615
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 8 cut(s) 229, 236, 451, 693, 701, 877, 1010, 1024
AluI AGCT 8 cut(s) 229, 236, 451, 693, 701, 877, 1010, 1024
Alw26I GTCTC 1 cut(s) 1131
AlwI GGATC 4 cut(s) 69, 192, 786, 859
Aor51HI AGCGCT 1 cut(s) 385
AoxI GGCC 1 cut(s) 972
ApeKI GCWGC 1 cut(s) 701
ApoI RAATTY 4 cut(s) 293, 323, 377, 720
ArsI GACNNNNNNTTYG 2 cut(s) 998, 1030
Asp700I GAANNNNTTC 2 cut(s) 18, 74
AspLEI GCGC 2 cut(s) 386, 583
AspS9I GGNCC 1 cut(s) 973
AsuHPI GGTGA 1 cut(s) 686
BauI CACGAG 1 cut(s) 900
BbsI GAAGAC 1 cut(s) 662
BbvCI CCTCAGC 1 cut(s) 666
BbvI GCAGC 1 cut(s) 688
BccI CCATC 1 cut(s) 665
BcoDI GTCTC 1 cut(s) 1131
BfmI CTRYAG 2 cut(s) 194, 599
BfoI RGCGCY 1 cut(s) 387
BisI GCNGC 1 cut(s) 702
BlsI GCNGC 1 cut(s) 703
BmgBI CACGTC 1 cut(s) 615
BmgT120I GGNCC 1 cut(s) 973
BmiI GGNNCC 1 cut(s) 975
BmsI GCATC 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 662
Bpu10I CCTNAGC 1 cut(s) 666
BpuEI CTTGAG 2 cut(s) 473, 931
BsaHI GRCGYC 1 cut(s) 930
BsaI GGTCTC 1 cut(s) 1131
BsaJI CCNNGG 1 cut(s) 712
BsaXI ACNNNNNCTCC 1 cut(s) 1167
Bse1I ACTGG 2 cut(s) 138, 186
Bse3DI GCAATG 2 cut(s) 167, 987
BseDI CCNNGG 1 cut(s) 712
BseGI GGATG 2 cut(s) 292, 676
BseMI GCAATG 2 cut(s) 167, 987
BseMII CTCAG 5 cut(s) 234, 429, 657, 879, 1034
BseNI ACTGG 2 cut(s) 138, 186
BseRI GAGGAG 2 cut(s) 368, 470
BseXI GCAGC 1 cut(s) 688
BseYI CCCAGC 1 cut(s) 246
BsgI GTGCAG 2 cut(s) 134, 625
Bsh1285I CGRYCG 1 cut(s) 332
BshFI GGCC 1 cut(s) 974
BsiEI CGRYCG 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 1131
BsnI GGCC 1 cut(s) 974
Bso31I GGTCTC 1 cut(s) 1131
Bsp143I GATC 8 cut(s) 61, 94, 184, 329, 778, 851, 953, 1030
BspACI CCGC 1 cut(s) 866
BspANI GGCC 1 cut(s) 974
BspCNI CTCAG 5 cut(s) 233, 430, 658, 880, 1033
BspLI GGNNCC 1 cut(s) 975
BspMAI CTGCAG 1 cut(s) 603
BspPI GGATC 4 cut(s) 69, 192, 786, 859
BspQI GCTCTTC 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 1131
BsrDI GCAATG 2 cut(s) 167, 987
BsrI ACTGG 2 cut(s) 138, 186
BssECI CCNNGG 1 cut(s) 712
BssMI GATC 8 cut(s) 61, 94, 184, 329, 778, 851, 953, 1030
BssNI GRCGYC 1 cut(s) 930
BssSI CACGAG 1 cut(s) 900
BssT1I CCWWGG 1 cut(s) 712
Bst2BI CACGAG 1 cut(s) 900
Bst4CI ACNGT 2 cut(s) 348, 421
Bst6I CTCTTC 3 cut(s) 125, 150, 219
BstACI GRCGYC 1 cut(s) 930
BstC8I GCNNGC 2 cut(s) 768, 879
BstDEI CTNAG 8 cut(s) 47, 220, 438, 465, 666, 888, 1011, 1020
BstF5I GGATG 2 cut(s) 292, 676
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 2 cut(s) 386, 583
BstKTI GATC 8 cut(s) 64, 97, 187, 332, 781, 854, 956, 1033
BstMAI GTCTC 1 cut(s) 1131
BstMBI GATC 8 cut(s) 61, 94, 184, 329, 778, 851, 953, 1030
BstMCI CGRYCG 1 cut(s) 332
BstMWI GCNNNNNNNGC 1 cut(s) 874
BstNSI RCATGY 1 cut(s) 1184
BstSFI CTRYAG 2 cut(s) 194, 599
BstV1I GCAGC 1 cut(s) 688
BstV2I GAAGAC 1 cut(s) 662
BstX2I RGATCY 2 cut(s) 61, 184
BstYI RGATCY 2 cut(s) 61, 184
BsuRI GGCC 1 cut(s) 974
BtrI CACGTC 1 cut(s) 615
BtsCI GGATG 2 cut(s) 292, 676
BtsI GCAGTG 1 cut(s) 608
BtsIMutI CAGTG 3 cut(s) 117, 145, 608
Cac8I GCNNGC 2 cut(s) 768, 879
CfoI GCGC 2 cut(s) 386, 583
Cfr13I GGNCC 1 cut(s) 973
CseI GACGC 1 cut(s) 919
Csp6I GTAC 2 cut(s) 34, 401
CviAII CATG 4 cut(s) 145, 488, 782, 1181
CviQI GTAC 2 cut(s) 34, 401
DdeI CTNAG 8 cut(s) 47, 220, 438, 465, 666, 888, 1011, 1020
DpnI GATC 8 cut(s) 63, 96, 186, 331, 780, 853, 955, 1032
DpnII GATC 8 cut(s) 61, 94, 184, 329, 778, 851, 953, 1030
DraI TTTAAA 1 cut(s) 726
Eam1104I CTCTTC 3 cut(s) 125, 150, 219
EarI CTCTTC 3 cut(s) 125, 150, 219
Eco130I CCWWGG 1 cut(s) 712
Eco31I GGTCTC 1 cut(s) 1131
Eco32I GATATC 1 cut(s) 444
Eco47III AGCGCT 1 cut(s) 385
Eco57I CTGAAG 5 cut(s) 86, 149, 291, 608, 674
EcoRV GATATC 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 712
EcoT22I ATGCAT 1 cut(s) 987
ErhI CCWWGG 1 cut(s) 712
FaeI CATG 4 cut(s) 148, 491, 785, 1184
FatI CATG 4 cut(s) 144, 487, 781, 1180
Fnu4HI GCNGC 1 cut(s) 702
FokI GGATG 2 cut(s) 299, 683
Fsp4HI GCNGC 1 cut(s) 702
GlaI GCGC 2 cut(s) 385, 582
GluI GCNGC 1 cut(s) 702
GsaI CCCAGC 1 cut(s) 250
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 1 cut(s) 974
HgaI GACGC 1 cut(s) 919
HhaI GCGC 2 cut(s) 386, 583
Hin1I GRCGYC 1 cut(s) 930
Hin1II CATG 4 cut(s) 148, 491, 785, 1184
Hin6I GCGC 2 cut(s) 384, 581
HinP1I GCGC 2 cut(s) 384, 581
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HindIII AAGCTT 2 cut(s) 234, 449
HinfI GANTC 5 cut(s) 19, 218, 609, 892, 1001
HpaI GTTAAC 1 cut(s) 787
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 4 cut(s) 36, 687, 787, 899
Hpy188I TCNGA 8 cut(s) 66, 223, 310, 329, 439, 511, 654, 889
Hpy188III TCNNGA 3 cut(s) 632, 900, 1140
Hpy8I GTNNAC 4 cut(s) 36, 687, 787, 899
HpyAV CCTTC 2 cut(s) 583, 1140
HpyCH4III ACNGT 2 cut(s) 348, 421
HpyCH4IV ACGT 1 cut(s) 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 874
HpyF3I CTNAG 8 cut(s) 47, 220, 438, 465, 666, 888, 1011, 1020
HpySE526I ACGT 1 cut(s) 614
Hsp92I GRCGYC 1 cut(s) 930
Hsp92II CATG 4 cut(s) 148, 491, 785, 1184
HspAI GCGC 2 cut(s) 384, 581
KspAI GTTAAC 1 cut(s) 787
Kzo9I GATC 8 cut(s) 61, 94, 184, 329, 778, 851, 953, 1030
LguI GCTCTTC 1 cut(s) 219
LpnPI CCDG 9 cut(s) 151, 167, 260, 355, 756, 826, 863, 990, 1157
Lsp1109I GCAGC 1 cut(s) 688
LweI GCATC 1 cut(s) 502
MaeII ACGT 1 cut(s) 614
MaeIII GTNAC 2 cut(s) 674, 931
MalI GATC 8 cut(s) 63, 96, 186, 331, 780, 853, 955, 1032
MboI GATC 8 cut(s) 61, 94, 184, 329, 778, 851, 953, 1030
MflI RGATCY 2 cut(s) 61, 184
MluCI AATT 7 cut(s) 293, 323, 377, 407, 720, 798, 824
MlyI GAGTC 2 cut(s) 212, 901
MmeI TCCRAC 3 cut(s) 330, 549, 829
Mph1103I ATGCAT 1 cut(s) 987
MroXI GAANNNNTTC 2 cut(s) 18, 74
MseI TTAA 7 cut(s) 162, 231, 374, 725, 786, 1158, 1189
MspA1I CMGCKG 2 cut(s) 877, 1024
MwoI GCNNNNNNNGC 1 cut(s) 874
NdeII GATC 8 cut(s) 61, 94, 184, 329, 778, 851, 953, 1030
NlaIII CATG 4 cut(s) 148, 491, 785, 1184
NlaIV GGNNCC 1 cut(s) 975
NmuCI GTSAC 2 cut(s) 674, 931
NsiI ATGCAT 1 cut(s) 987
NspI RCATGY 1 cut(s) 1184
PciSI GCTCTTC 1 cut(s) 219
PdmI GAANNNNTTC 2 cut(s) 18, 74
PfeI GAWTC 3 cut(s) 19, 609, 1001
PkrI GCNGC 1 cut(s) 703
Ple19I CGATCG 1 cut(s) 332
PleI GAGTC 2 cut(s) 212, 900
PpsI GAGTC 2 cut(s) 212, 900
PspFI CCCAGC 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 975
PspPI GGNCC 1 cut(s) 973
PsrI GAACNNNNNNTAC 2 cut(s) 821, 853
PstI CTGCAG 1 cut(s) 603
PsuI RGATCY 2 cut(s) 61, 184
PvuI CGATCG 1 cut(s) 332
PvuII CAGCTG 2 cut(s) 877, 1024
RsaI GTAC 2 cut(s) 35, 402
RsaNI GTAC 2 cut(s) 34, 401
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 7 cut(s) 162, 231, 374, 725, 786, 1158, 1189
SatI GCNGC 1 cut(s) 702
Sau3AI GATC 8 cut(s) 61, 94, 184, 329, 778, 851, 953, 1030
Sau96I GGNCC 1 cut(s) 973
SchI GAGTC 2 cut(s) 212, 901
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 2 cut(s) 194, 599
SmlI CTYRAG 2 cut(s) 452, 910
SmoI CTYRAG 2 cut(s) 452, 910
Sse9I AATT 7 cut(s) 293, 323, 377, 407, 720, 798, 824
SsiI CCGC 1 cut(s) 866
SspI AATATT 1 cut(s) 497
StyI CCWWGG 1 cut(s) 712
TaaI ACNGT 2 cut(s) 348, 421
TaiI ACGT 1 cut(s) 617
TaqI TCGA 2 cut(s) 332, 1091
TasI AATT 7 cut(s) 293, 323, 377, 407, 720, 798, 824
TatI WGTACW 2 cut(s) 33, 400
TfiI GAWTC 3 cut(s) 19, 609, 1001
Tru1I TTAA 7 cut(s) 162, 231, 374, 725, 786, 1158, 1189
Tru9I TTAA 7 cut(s) 162, 231, 374, 725, 786, 1158, 1189
TscAI CASTG 3 cut(s) 117, 145, 608
TseFI GTSAC 2 cut(s) 674, 931
TseI GCWGC 1 cut(s) 701
Tsp45I GTSAC 2 cut(s) 674, 931
TspDTI ATGAA 7 cut(s) 161, 168, 357, 378, 518, 746, 1027
TspGWI ACGGA 2 cut(s) 492, 955
TspRI CASTG 3 cut(s) 117, 145, 608
XapI RAATTY 4 cut(s) 293, 323, 377, 720
XceI RCATGY 1 cut(s) 1184
XmnI GAANNNNTTC 2 cut(s) 18, 74
Zsp2I ATGCAT 1 cut(s) 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.