Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033573.1

Orthogroup ID

OG0011371

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1008

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033573.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1007 bp

atgtcaaaggggaacatcccacaggtgcctaagggtcctactaagaatttgaagagtcttatcaaacaagcaacggttggcaacaagaaactgcagcctcagaagtcggtgagaaaatcaacaactgtcaaaacagttcccaaatctggtttgagcaaacctgagggacttgaagagattgacaagattcagaagcagattctggcactgcaaactgagaaagagtttgtaaagagctcgtacgagaatggacttgccaagtactgggagattgagaataacatcaagggaatgcaagagaaagtaagcagcttgcaggatgagtttggtgagggtctggtgattgaagataatgatgctcggggtttgatggcagcggcagcattgaaatcatgccaagatacattgactcagttgcagaagaaacaggaaagttcagctgaggaagcaagagttgagtcacaaagggttaaggatgccaggaagaactttgagtctctgaagaataagcttcctaatgatcaggcccatcccggaaagtcatatgcaaaagatgaagacgtaaaagcagtaaaggggacaaattcagagcaggaagaggagagtgaaactcatgagagagagaaactcgagatgttacgagagaaaataaaggagcactatgatgcagtgtcagatgaatctctcaccgttagtgaaatggcagggaggattgacgagattgtgagtaaagtgatcagcttagagactgctatttcatcccagacagctctagttgatagattaagaagtgaaaacaacgagttatgtaaacaaattcgtactttggaagatgacaaggagactctaattgatggcaagaaggagttagtgagtaaaaagcttaatgagttggaggaaacattgcagcgagctcaggatctaaatgaaagtgttgaaagccagaagaataatctccagatacattttactgaagcgcattacagccttgatcacatttctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

335

Amino Acids

37.79

Weight (kDa)

5.62

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22560
fragaria_vesca	FvH4_1g19623
malus_domestica	MD01G1039700.v1.1 MD15G1312100.v1.1
prunus_persica	Prupe.6G201900_v2.0.a1
pyrus_communis	pycom01g06730 pycom01g06750
rosa_chinensis	RchiOBHm_Chr2g0111181
rosa_laevigata	RLG00000017871
rosa_multiflora	Rmu_co8252337.1_g000001 Rmu_sc0033572.1_g000001 Rmu_sc0033573.1_g000001 Rmu_ssc0000102.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132650
rosa_rugosa	Rorug02G0171300
rosa_samantha	Rh2AG224300 Rh2BG236000 Rh2CG227400 Rh2DG232000
rosa_wichuraiana	Rw2G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccB7I	CCANNNNNTGG	1 cut(s)	264
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	1 cut(s)	927
AcsI	RAATTY	3 cut(s)	46, 583, 816
AcuI	CTGAAG	2 cut(s)	521, 993
AfaI	GTAC	3 cut(s)	242, 263, 823
AfiI	CCNNNNNNNGG	2 cut(s)	146, 264
AgsI	TTSAA	5 cut(s)	52, 173, 347, 388, 938
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	8 cut(s)	237, 312, 440, 511, 741, 770, 883, 914
AluI	AGCT	8 cut(s)	237, 312, 440, 511, 741, 770, 883, 914
Alw21I	GWGCWC	3 cut(s)	239, 660, 916
Alw26I	GTCTC	3 cut(s)	501, 740, 836
AlwI	GGATC	1 cut(s)	927
AlwNI	CAGNNNCTG	1 cut(s)	202
Ama87I	CYCGRG	2 cut(s)	360, 629
AoxI	GGCC	1 cut(s)	525
ApeKI	GCWGC	5 cut(s)	94, 309, 374, 380, 907
ApoI	RAATTY	3 cut(s)	46, 583, 816
AspLEI	GCGC	1 cut(s)	979
AspS9I	GGNCC	2 cut(s)	35, 526
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	4 cut(s)	121, 341, 352, 679
AvaI	CYCGRG	2 cut(s)	360, 629
AvaII	GGWCC	1 cut(s)	35
AxyI	CCTNAGG	2 cut(s)	30, 162
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	239, 916
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	3 cut(s)	239, 660, 916
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	5 cut(s)	106, 321, 386, 392, 919
BccI	CCATC	3 cut(s)	364, 537, 848
BciT130I	CCWGG	1 cut(s)	481
BclI	TGATCA	3 cut(s)	520, 735, 991
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	3 cut(s)	501, 740, 836
BfaI	CTAG	1 cut(s)	773
BfmI	CTRYAG	1 cut(s)	92
BisI	GCNGC	6 cut(s)	95, 310, 375, 378, 381, 908
BlsI	GCNGC	6 cut(s)	96, 311, 376, 379, 382, 909
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	2 cut(s)	481, 534
Bme18I	GGWCC	1 cut(s)	35
BmeT110I	CYCGRG	2 cut(s)	360, 629
BmgT120I	GGNCC	2 cut(s)	35, 526
BmiI	GGNNCC	2 cut(s)	27, 36
BmrFI	CCNGG	2 cut(s)	481, 534
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	3 cut(s)	346, 466, 655
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	564
BplI	GAGNNNNNCTC	4 cut(s)	595, 627, 612, 644
BpmI	CTGGAG	1 cut(s)	941
Bpu10I	CCTNAGC	2 cut(s)	441, 915
BpuMI	CCSGG	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 264
Bse1I	ACTGG	1 cut(s)	269
Bse21I	CCTNAGG	2 cut(s)	30, 162
Bse3DI	GCAATG	1 cut(s)	902
BseBI	CCWGG	1 cut(s)	481
BseGI	GGATG	5 cut(s)	15, 325, 481, 529, 758
BseLI	CCNNNNNNNGG	2 cut(s)	146, 264
BseMI	GCAATG	1 cut(s)	902
BseMII	CTCAG	6 cut(s)	113, 153, 207, 425, 432, 929
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	614
BseXI	GCAGC	5 cut(s)	106, 321, 386, 392, 919
BshFI	GGCC	1 cut(s)	527
BshNI	GGYRCC	1 cut(s)	25
BsiHKAI	GWGCWC	3 cut(s)	239, 660, 916
BsiHKCI	CYCGRG	2 cut(s)	360, 629
BsiSI	CCGG	1 cut(s)	534
BsiWI	CGTACG	1 cut(s)	240
BslFI	GGGAC	2 cut(s)	180, 592
BslI	CCNNNNNNNGG	2 cut(s)	146, 264
BsmAI	GTCTC	3 cut(s)	501, 740, 836
BsmFI	GGGAC	2 cut(s)	180, 592
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	527
BsoBI	CYCGRG	2 cut(s)	360, 629
Bsp1286I	GDGCHC	3 cut(s)	239, 660, 916
Bsp143I	GATC	4 cut(s)	520, 735, 919, 991
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	6 cut(s)	112, 154, 208, 424, 433, 928
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	27, 36
BspMAI	CTGCAG	1 cut(s)	96
BspPI	GGATC	1 cut(s)	927
BspT107I	GGYRCC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	902
BsrI	ACTGG	1 cut(s)	269
BssMI	GATC	4 cut(s)	520, 735, 919, 991
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	4 cut(s)	76, 127, 136, 691
Bst6I	CTCTTC	3 cut(s)	47, 168, 591
BstC8I	GCNNGC	2 cut(s)	314, 912
BstDEI	CTNAG	9 cut(s)	30, 42, 99, 162, 216, 411, 441, 742, 915
BstF5I	GGATG	5 cut(s)	15, 325, 481, 529, 758
BstHHI	GCGC	1 cut(s)	979
BstKTI	GATC	4 cut(s)	523, 738, 922, 994
BstMAI	GTCTC	3 cut(s)	501, 740, 836
BstMBI	GATC	4 cut(s)	520, 735, 919, 991
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 446
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	2 cut(s)	479, 532
BstSFI	CTRYAG	1 cut(s)	92
BstV1I	GCAGC	5 cut(s)	106, 321, 386, 392, 919
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	919
Bsu36I	CCTNAGG	2 cut(s)	30, 162
BsuRI	GGCC	1 cut(s)	527
BtsCI	GGATG	5 cut(s)	15, 325, 481, 529, 758
BtsI	GCAGTG	2 cut(s)	206, 675
BtsIMutI	CAGTG	2 cut(s)	206, 675
Cac8I	GCNNGC	2 cut(s)	314, 912
CaiI	CAGNNNCTG	1 cut(s)	202
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	1 cut(s)	979
Cfr13I	GGNCC	2 cut(s)	35, 526
Csp6I	GTAC	3 cut(s)	241, 262, 822
CviAII	CATG	2 cut(s)	393, 614
CviQI	GTAC	3 cut(s)	241, 262, 822
DdeI	CTNAG	9 cut(s)	30, 42, 99, 162, 216, 411, 441, 742, 915
DpnI	GATC	4 cut(s)	522, 737, 921, 993
DpnII	GATC	4 cut(s)	520, 735, 919, 991
Eam1104I	CTCTTC	3 cut(s)	47, 168, 591
EarI	CTCTTC	3 cut(s)	47, 168, 591
Ecl136II	GAGCTC	2 cut(s)	237, 914
Eco24I	GRGCYC	2 cut(s)	239, 916
Eco47I	GGWCC	1 cut(s)	35
Eco53kI	GAGCTC	2 cut(s)	237, 914
Eco57I	CTGAAG	2 cut(s)	521, 993
Eco81I	CCTNAGG	2 cut(s)	30, 162
Eco88I	CYCGRG	2 cut(s)	360, 629
EcoICRI	GAGCTC	2 cut(s)	237, 914
EcoO109I	RGGNCCY	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	479
EcoT38I	GRGCYC	2 cut(s)	239, 916
FaeI	CATG	2 cut(s)	396, 617
FaiI	YATR	7 cut(s)	394, 544, 546, 615, 663, 808, 1005
FaqI	GGGAC	2 cut(s)	180, 592
FatI	CATG	2 cut(s)	392, 613
FauNDI	CATATG	1 cut(s)	544
FbaI	TGATCA	3 cut(s)	520, 735, 991
Fnu4HI	GCNGC	6 cut(s)	95, 310, 375, 378, 381, 908
FokI	GGATG	5 cut(s)	2, 332, 488, 516, 745
FriOI	GRGCYC	2 cut(s)	239, 916
Fsp4HI	GCNGC	6 cut(s)	95, 310, 375, 378, 381, 908
FspBI	CTAG	1 cut(s)	773
GlaI	GCGC	1 cut(s)	978
GluI	GCNGC	6 cut(s)	95, 310, 375, 378, 381, 908
GsuI	CTGGAG	1 cut(s)	941
HaeIII	GGCC	1 cut(s)	527
HapII	CCGG	1 cut(s)	534
HhaI	GCGC	1 cut(s)	979
Hin1II	CATG	2 cut(s)	396, 617
Hin6I	GCGC	1 cut(s)	977
HinP1I	GCGC	1 cut(s)	977
HindIII	AAGCTT	2 cut(s)	509, 881
HinfI	GANTC	8 cut(s)	55, 187, 199, 409, 458, 494, 680, 844
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	4 cut(s)	121, 341, 352, 679
Hpy166II	GTNNAC	1 cut(s)	812
Hpy188I	TCNGA	5 cut(s)	102, 192, 501, 589, 676
Hpy188III	TCNNGA	4 cut(s)	614, 631, 917, 958
Hpy8I	GTNNAC	1 cut(s)	812
HpyAV	CCTTC	1 cut(s)	856
HpyCH4III	ACNGT	4 cut(s)	76, 127, 136, 691
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	8 cut(s)	94, 211, 295, 316, 418, 548, 668, 907
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 446
HpyF3I	CTNAG	9 cut(s)	30, 42, 99, 162, 216, 411, 441, 742, 915
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	2 cut(s)	396, 617
HspAI	GCGC	1 cut(s)	977
Ksp22I	TGATCA	3 cut(s)	520, 735, 991
Kzo9I	GATC	4 cut(s)	520, 735, 919, 991
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	5 cut(s)	106, 321, 386, 392, 919
LweI	GCATC	3 cut(s)	346, 466, 655
MaeI	CTAG	1 cut(s)	773
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	2 cut(s)	459, 636
MalI	GATC	4 cut(s)	522, 737, 921, 993
MboI	GATC	4 cut(s)	520, 735, 919, 991
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	3 cut(s)	239, 660, 916
MluCI	AATT	4 cut(s)	46, 583, 816, 849
MlyI	GAGTC	5 cut(s)	64, 403, 467, 503, 838
MmeI	TCCRAC	1 cut(s)	873
MnlI	CCTC	7 cut(s)	108, 157, 325, 436, 592, 702, 889
MseI	TTAA	3 cut(s)	471, 785, 885
MslI	CAYNNNNRTG	1 cut(s)	663
MspA1I	CMGCKG	2 cut(s)	377, 440
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	2 cut(s)	481, 534
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	481
MwoI	GCNNNNNNNGC	2 cut(s)	380, 446
NciI	CCSGG	1 cut(s)	534
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	4 cut(s)	520, 735, 919, 991
NlaIII	CATG	2 cut(s)	396, 617
NlaIV	GGNNCC	2 cut(s)	27, 36
NmuCI	GTSAC	1 cut(s)	459
PaeR7I	CTCGAG	1 cut(s)	629
PagI	TCATGA	1 cut(s)	613
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	187, 199, 680
Pfl23II	CGTACG	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	264
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	6 cut(s)	96, 311, 376, 379, 382, 909
PleI	GAGTC	5 cut(s)	63, 403, 466, 502, 838
PpsI	GAGTC	5 cut(s)	63, 403, 466, 502, 838
PpuMI	RGGWCCY	1 cut(s)	35
Psp124BI	GAGCTC	2 cut(s)	239, 916
Psp5II	RGGWCCY	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspLI	CGTACG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	27, 36
PspPI	GGNCC	2 cut(s)	35, 526
PspPPI	RGGWCCY	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	919
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	3 cut(s)	242, 263, 823
RsaNI	GTAC	3 cut(s)	241, 262, 822
RseI	CAYNNNNRTG	1 cut(s)	663
SacI	GAGCTC	2 cut(s)	239, 916
SaqAI	TTAA	3 cut(s)	471, 785, 885
SatI	GCNGC	6 cut(s)	95, 310, 375, 378, 381, 908
Sau3AI	GATC	4 cut(s)	520, 735, 919, 991
Sau96I	GGNCC	2 cut(s)	35, 526
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	5 cut(s)	64, 403, 467, 503, 838
ScrFI	CCNGG	2 cut(s)	481, 534
SduI	GDGCHC	3 cut(s)	239, 660, 916
SfaNI	GCATC	3 cut(s)	346, 466, 655
SfcI	CTRYAG	1 cut(s)	92
Sfr274I	CTCGAG	1 cut(s)	629
SinI	GGWCC	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	4 cut(s)	46, 583, 816, 849
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	1 cut(s)	773
SstI	GAGCTC	2 cut(s)	239, 916
StyD4I	CCNGG	2 cut(s)	479, 532
TaaI	ACNGT	4 cut(s)	76, 127, 136, 691
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	1 cut(s)	630
TasI	AATT	4 cut(s)	46, 583, 816, 849
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	3 cut(s)	187, 199, 680
Tru1I	TTAA	3 cut(s)	471, 785, 885
Tru9I	TTAA	3 cut(s)	471, 785, 885
TscAI	CASTG	2 cut(s)	213, 675
TseFI	GTSAC	1 cut(s)	459
TseI	GCWGC	5 cut(s)	94, 309, 374, 380, 907
Tsp45I	GTSAC	1 cut(s)	459
TspDTI	ATGAA	4 cut(s)	570, 693, 747, 942
TspRI	CASTG	2 cut(s)	213, 675
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	3 cut(s)	46, 583, 816
XhoI	CTCGAG	1 cut(s)	629
XspI	CTAG	1 cut(s)	773
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.