Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8252337.1

Orthogroup ID

OG0011371

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 676

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8252337.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggaggagaaggttcatagcacactcaaaatcattgataatgatggggactcctttgcccagagggcagaaatgtactacaagaagaggccagagctagtaatcttcgttgaagaattctttcgggcataccgagctttagcagagagatatgatcacttatcaagagatctgcagagtgccaaccgtaccattgccactgttttcccagaacgagttcagtatgcaatggaggatgaggatgatgaaactgcttctcaaacgtcggtttcttccaatgataccaacaaagcctatcctgatgtaaacaacgcaagcatcccaaaagtccccaagggcccagataaagatttcaggagcaagtccatgttactctcgaagaagggcacgcctcgaagacttcctagctctcctagacctgctgcaggtcctccaaggtcggggctgacgaaagaagaggcattagaagaaattgataagcttcataaggacattttggcgctacaaactgaaaaggagtttgtgaagaccatgtatgaacgagggtatgacaggtactgggagtttgagaatgagatcacggcaatgcaaaaaagagtttccagcttacaagatgagtatggcattggcactgttattgaagacaatgaagctcgaactttaatggcagccaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008092 GO:0016020 GO:0044464 GO:0044877 GO:0051015 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

225

Amino Acids

25.83

Weight (kDa)

5.23

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22560
fragaria_vesca	FvH4_1g19623
malus_domestica	MD01G1039700.v1.1 MD15G1312100.v1.1
prunus_persica	Prupe.6G201900_v2.0.a1
pyrus_communis	pycom01g06730 pycom01g06750
rosa_chinensis	RchiOBHm_Chr2g0111181
rosa_laevigata	RLG00000017871
rosa_multiflora	Rmu_co8252337.1_g000001 Rmu_sc0033572.1_g000001 Rmu_sc0033573.1_g000001 Rmu_ssc0000102.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132650
rosa_rugosa	Rorug02G0171300
rosa_samantha	Rh2AG224300 Rh2BG236000 Rh2CG227400 Rh2DG232000
rosa_wichuraiana	Rw2G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	416, 427
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	3 cut(s)	77, 190, 557
AfiI	CCNNNNNNNGG	2 cut(s)	425, 440
AgsI	TTSAA	2 cut(s)	113, 641
AluBI	AGCT	6 cut(s)	97, 137, 408, 481, 606, 653
AluI	AGCT	6 cut(s)	97, 137, 408, 481, 606, 653
AlwNI	CAGNNNCTG	1 cut(s)	558
AoxI	GGCC	2 cut(s)	89, 337
ApaI	GGGCCC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	422, 668
ApoI	RAATTY	1 cut(s)	116
Asp700I	GAANNNNTTC	2 cut(s)	120, 216
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	3 cut(s)	337, 338, 428
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	2 cut(s)	341, 389
BanII	GRGCYC	1 cut(s)	341
BbsI	GAAGAC	3 cut(s)	403, 533, 648
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	597
BclI	TGATCA	1 cut(s)	154
BfaI	CTAG	3 cut(s)	98, 405, 414
BfmI	CTRYAG	2 cut(s)	173, 423
BfoI	RGCGCY	1 cut(s)	503
BfuAI	ACCTGC	2 cut(s)	416, 427
BglI	GCCNNNNNGGC	1 cut(s)	65
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	2 cut(s)	423, 669
BlsI	GCNGC	2 cut(s)	424, 670
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	3 cut(s)	337, 338, 428
BmiI	GGNNCC	1 cut(s)	339
BmrI	ACTGGG	1 cut(s)	568
BmsI	GCATC	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	568
BpiI	GAAGAC	3 cut(s)	403, 533, 648
BsaJI	CCNNGG	2 cut(s)	333, 434
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 440
Bse1I	ACTGG	1 cut(s)	563
Bse3DI	GCAATG	3 cut(s)	192, 234, 591
BseDI	CCNNGG	2 cut(s)	333, 434
BseGI	GGATG	3 cut(s)	241, 247, 318
BseLI	CCNNNNNNNGG	2 cut(s)	425, 440
BseMI	GCAATG	3 cut(s)	192, 234, 591
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	2 cut(s)	341, 389
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	2 cut(s)	91, 339
BslFI	GGGAC	2 cut(s)	62, 314
BslI	CCNNNNNNNGG	2 cut(s)	425, 440
BsmFI	GGGAC	2 cut(s)	62, 314
BsnI	GGCC	2 cut(s)	91, 339
Bsp120I	GGGCCC	1 cut(s)	337
Bsp1286I	GDGCHC	2 cut(s)	341, 389
Bsp143I	GATC	3 cut(s)	154, 169, 576
BspANI	GGCC	2 cut(s)	91, 339
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	2 cut(s)	177, 427
BspMI	ACCTGC	2 cut(s)	416, 427
BsrDI	GCAATG	3 cut(s)	192, 234, 591
BsrI	ACTGG	1 cut(s)	563
BssECI	CCNNGG	2 cut(s)	333, 434
BssMI	GATC	3 cut(s)	154, 169, 576
BssT1I	CCWWGG	2 cut(s)	333, 434
Bst4CI	ACNGT	3 cut(s)	188, 202, 634
Bst6I	CTCTTC	2 cut(s)	80, 450
BstC8I	GCNNGC	2 cut(s)	316, 389
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	3 cut(s)	241, 247, 318
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	3 cut(s)	157, 172, 579
BstMBI	GATC	3 cut(s)	154, 169, 576
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 134
BstSFI	CTRYAG	2 cut(s)	173, 423
BstSLI	GKGCMC	2 cut(s)	341, 389
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	3 cut(s)	403, 533, 648
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	91, 339
BtsCI	GGATG	3 cut(s)	241, 247, 318
BtsIMutI	CAGTG	2 cut(s)	198, 630
BveI	ACCTGC	2 cut(s)	416, 427
Cac8I	GCNNGC	2 cut(s)	316, 389
CaiI	CAGNNNCTG	1 cut(s)	558
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	3 cut(s)	337, 338, 428
Csp6I	GTAC	3 cut(s)	76, 189, 556
CviAII	CATG	2 cut(s)	367, 532
CviQI	GTAC	3 cut(s)	76, 189, 556
DpnI	GATC	3 cut(s)	156, 171, 578
DpnII	GATC	3 cut(s)	154, 169, 576
Eam1104I	CTCTTC	2 cut(s)	80, 450
EarI	CTCTTC	2 cut(s)	80, 450
Eco130I	CCWWGG	2 cut(s)	333, 434
Eco24I	GRGCYC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	428
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	2 cut(s)	337, 428
EcoRI	GAATTC	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	333, 434
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	2 cut(s)	333, 434
FaeI	CATG	2 cut(s)	370, 535
FaqI	GGGAC	2 cut(s)	62, 314
FatI	CATG	2 cut(s)	366, 531
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	423, 669
FokI	GGATG	3 cut(s)	248, 254, 305
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	2 cut(s)	423, 669
FspBI	CTAG	3 cut(s)	98, 405, 414
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	2 cut(s)	423, 669
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	2 cut(s)	91, 339
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	2 cut(s)	370, 535
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188III	TCNNGA	4 cut(s)	165, 299, 355, 376
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	4, 376
HpyCH4III	ACNGT	3 cut(s)	188, 202, 634
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	4 cut(s)	175, 227, 425, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 134
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	370, 535
HspAI	GCGC	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	154, 169, 576
LmnI	GCTCC	1 cut(s)	357
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	3 cut(s)	98, 405, 414
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	3 cut(s)	156, 171, 578
MboI	GATC	3 cut(s)	154, 169, 576
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	341, 389
MluCI	AATT	2 cut(s)	116, 471
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	8 cut(s)	57, 81, 226, 232, 402, 441, 451, 536
MroXI	GAANNNNTTC	2 cut(s)	120, 216
MseI	TTAA	1 cut(s)	662
MslI	CAYNNNNRTG	1 cut(s)	584
MwoI	GCNNNNNNNGC	2 cut(s)	65, 134
NdeII	GATC	3 cut(s)	154, 169, 576
NlaIII	CATG	2 cut(s)	370, 535
NlaIV	GGNNCC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	2 cut(s)	130, 446
PdmI	GAANNNNTTC	2 cut(s)	120, 216
PkrI	GCNGC	2 cut(s)	424, 670
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	428
Psp5II	RGGWCCY	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	339
PspOMI	GGGCCC	1 cut(s)	337
PspPI	GGNCC	3 cut(s)	337, 338, 428
PspPPI	RGGWCCY	1 cut(s)	428
PstI	CTGCAG	2 cut(s)	177, 427
PstNI	CAGNNNCTG	1 cut(s)	558
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	3 cut(s)	77, 190, 557
RsaNI	GTAC	3 cut(s)	76, 189, 556
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	2 cut(s)	423, 669
Sau3AI	GATC	3 cut(s)	154, 169, 576
Sau96I	GGNCC	3 cut(s)	337, 338, 428
SchI	GAGTC	1 cut(s)	44
SduI	GDGCHC	2 cut(s)	341, 389
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	2 cut(s)	173, 423
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	116, 471
SspMI	CTAG	3 cut(s)	98, 405, 414
StyI	CCWWGG	2 cut(s)	333, 434
TaaI	ACNGT	3 cut(s)	188, 202, 634
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	3 cut(s)	377, 394, 655
TasI	AATT	2 cut(s)	116, 471
TatI	WGTACW	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	2 cut(s)	205, 637
TseI	GCWGC	2 cut(s)	422, 668
TspDTI	ATGAA	5 cut(s)	5, 261, 473, 552, 663
TspRI	CASTG	2 cut(s)	205, 637
VpaK11BI	GGWCC	1 cut(s)	428
XagI	CCTNNNNNAGG	1 cut(s)	423
XapI	RAATTY	1 cut(s)	116
XmnI	GAANNNNTTC	2 cut(s)	120, 216
XspI	CTAG	3 cut(s)	98, 405, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.