MD15G1344100.v1.1

WD40-like Beta Propeller Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016112
Physical Location & Seq
Forward (+)
40101841 .. 40104445
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1344100.v1.1.491

Sequence Viewer

Length: 2070 bp
ATGAATCCCAAATCAGTTATCTGTTTGCTGCTCCATTCGGCGGCGCTCTGGTTGTGTACGGCGGTGGCCCACGACGGCTCCAGCATCGTCTTCACCACGCTTGGCCGATTAGACTACAACTTCGACATCTTCACCCTCCCGATTCGGGGCCCACCGTCCTCCACCACCGAAACCCAAATCACAGACGGCAAATCCGTCAATTTCAACGGCCACTTCCCCAACAAAACCCGAATCCAATCCCCCACGCGCTCCGACCCCTACCTCCAGCTCATCTACGTCACCGAAAGAAACGGCTTCTCCAACATATTCTACGACGCCGTTTATCTCAATTCCCAGACGGCGAGCAGCGGAAGACGGTCCACTCTTGAAGTATCGGACCGGGTTCAGGTCCCCCTGTTAAGTTTGGAGCAGGGGCAGAATCGTCTTTCCATGAAGGACAGGCCGACTTTGACGGGGGATTATTTGGTTTACGTCTCCACTCACGAGGACTCGGGTGTGCCAAGGACGAGTTCCGTCGCGGTGTACTCGACGCACCTGGACTCGAGTGTGACTCGGAGGCTCACTCCTCGCGGCGACGCTGACTTCAGTCCCTCCGTGTCACCGTCCGGAATCTGGACGGCGGTCGCTTCGTACGGACCGAGAGGCTGGACCGGCGAGGTCGAGGACCTGAGTACGGACATCTACGTGTTTTTGACTGGGGATGGGACTAGGCGAGTCAAGGTGGTCGAGCACGGTGGCTGGCCGAGTTGGGTCGACGATTCGACGATTTACTTTCACAGAAGAGGCGAGGATCAGTGGTGGAGTGTTTACAGGGCAATTTTACCGAGAGAGGGTCCGAGCTCCACCAAGTCGGTGGTGGTTCAGCGAGTCACTCCGCCGGGTCTCCACGCGTTCACACCCGCCACGTCACCAGGGAACCACGACTTCATCGCCTTGGCGACCAGAAGACCCACCTCGAGCTTTCGCCACGTGGAGCTTTTCGACCTGGTGAGGAATGAATTCAAGGAGCTCACTCGGCACGTCTCCCCCCAAACCCACCACTTCAACCCGTTCATCTCGCCCGATTCGAGTCGGGTCGGGTACCACAAGTGCAGAAGCAACGGAAACAAACAAGAAGGGTCCAAGCTTTTTCTTCAAAACATCCACAGCCCAATCCCGAACCTGTCAATCCTGAGAATCGACGGTTCGTTTCCTTCGGTTTCACCCGGGGGTGATCTCATCGCTTACGTGAACTTCCCGGGTGTGTATGTTGTGAACCGGGACGGTTCGAACCGGCACCAGGTATATCCTGGAAACGCCTTCTCGACCTCGTGGGACCCGGTCCGCAAGGGCGTCTTATACACGGGGGCCGGACTGGAGTTTGCACCTGAGAGCGCCGAGGTGGATATCATTGCCATCACCATTAATGATGTTGACGGAGCGACCTTTAAGAAGTTGACCACAAATGGGAAAAATAATGCTTTCCCTTCACCCTCACCAGACGGAAAACAAATCGTGTTCCGGTCAGGTCGTACGGGTCATAAGAACTTGTACATAATGGACGTTGAAGTTGGCGAGAGTGGCGGGCTCTACAGGTTAACGGAAGGTCCATGGACGGACACAATGTGTAATTGGTCTCCAGACGGAAATTGGATTGCGTTTGCATCGGACCGAGAGGACCCGGGTAGCGGGAGCTTCGAATTGTACGTGATTCGCCCGAACGGAACCGGCCTCCGGAAAGTGATCCAAAGCGGGACGGGCGGGCGGACCAACCACCCGTGGTTCAGCCCGGATAGTAAGAGCCTAGTCTTCACTTCAGACTATAGGGCCATATCAGCTGAGCCCATCTCAAACCCACATCACTACCAGCCTTATGGTGAGATCTTTACTGTGAAGTTGGACGGCTCTGATCTTAAGAGGCTGACACAAAATTCTTATGAGGATGGGACACCGGTGTGGGTCCCCCATTTCATTAAGCCCACGGACGTAGAGTGGCCCATGGATAGGCCTGGGTGTGAGTTTGAGGACTTGCACTGGCTCAATGAGGTTCCTAGCCACGGTGTCTTGAACATGCATCAATGTGGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PD40

Protein Analysis

690

Amino Acids

76.52

Weight (kDa)

6.32

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tricorn_2nd PF26550 465 - 600 6e-08 Tricorn protease second beta propeller domain
Tricorn_N PF26549 470 - 647 4.1e-21 Tricorn protease N-terminal beta propeller domain
PD40 PF07676 477 - 512 5.2e-07 WD40-like Beta Propeller Repeat
PD40 PF07676 530 - 563 9.5e-08 WD40-like Beta Propeller Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016112)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21680
fragaria_vesca FvH4_2g27620
malus_domestica MD15G1344100.v1.1
prunus_persica Prupe.1G491500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0296441
rosa_laevigata RLG00000011693
rosa_multiflora Rmu_sc0028875.1_g000001
rosa_roxburghii Rroxscaffold_7G00171530 Rroxscaffold_7G00178600
rosa_rugosa Rorug06G0262400
rosa_samantha Rh6AG373600 Rh6BG382400 Rh6CG387200 Rh6DG374900
rosa_wichuraiana Rw6G032600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1080
AccB1I GGYRCC 2 cut(s) 1080, 1275
AccI GTMKAC 1 cut(s) 753
AccII CGCG 4 cut(s) 247, 518, 570, 890
AccIII TCCGGA 2 cut(s) 605, 1713
AclWI GGATC 2 cut(s) 798, 1717
AcoI YGGCCR 3 cut(s) 103, 208, 740
AcsI RAATTY 2 cut(s) 998, 1909
AcuI CTGAAG 2 cut(s) 568, 1779
AcvI CACGTG 1 cut(s) 970
AcyI GRCGYC 2 cut(s) 315, 1332
AdeI CACNNNGTG 1 cut(s) 1605
AfaI GTAC 8 cut(s) 58, 524, 632, 673, 1082, 1513, 1532, 1685
AflII CTTAAG 1 cut(s) 1892
AflIII ACRYGT 2 cut(s) 684, 888
AgeI ACCGGT 1 cut(s) 1930
AgsI TTSAA 7 cut(s) 205, 368, 1003, 1045, 1136, 1547, 2047
AjiI CACGTC 2 cut(s) 906, 1021
AjnI CCWGG 6 cut(s) 534, 910, 984, 1278, 1288, 1987
AjuI GAANNNNNNNTTGG 2 cut(s) 493, 525
AleI CACNNNNGTG 1 cut(s) 1933
AluBI AGCT 8 cut(s) 268, 840, 960, 976, 1009, 1126, 1674, 1817
AluI AGCT 8 cut(s) 268, 840, 960, 976, 1009, 1126, 1674, 1817
Alw21I GWGCWC 3 cut(s) 732, 842, 1011
Alw26I GTCTC 4 cut(s) 478, 887, 1027, 1620
AlwI GGATC 2 cut(s) 798, 1717
Ama87I CYCGRG 6 cut(s) 490, 541, 955, 1205, 1237, 1660
Aor13HI TCCGGA 2 cut(s) 605, 1713
ApaI GGGCCC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 28, 345
ApoI RAATTY 2 cut(s) 998, 1909
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AseI ATTAAT 1 cut(s) 1404
AsiGI ACCGGT 1 cut(s) 1930
Asp700I GAANNNNTTC 1 cut(s) 998
Asp718I GGTACC 1 cut(s) 1080
AspLEI GCGC 3 cut(s) 46, 249, 1376
AsuII TTCGAA 2 cut(s) 1268, 1677
AvaI CYCGRG 6 cut(s) 490, 541, 955, 1205, 1237, 1660
BaeGI GKGCMC 1 cut(s) 152
BanI GGYRCC 2 cut(s) 1080, 1275
BanII GRGCYC 5 cut(s) 152, 842, 1011, 1569, 1824
BauI CACGAG 2 cut(s) 482, 1309
BbrPI CACGTG 1 cut(s) 970
BbsI GAAGAC 4 cut(s) 82, 358, 952, 1780
Bbv12I GWGCWC 3 cut(s) 732, 842, 1011
BbvI GCAGC 2 cut(s) 15, 357
BccI CCATC 4 cut(s) 695, 1403, 1832, 1916
BceAI ACGGC 9 cut(s) 75, 91, 202, 223, 302, 307, 354, 633, 1897
BciT130I CCWGG 6 cut(s) 536, 912, 986, 1280, 1290, 1989
BcoDI GTCTC 4 cut(s) 478, 887, 1027, 1620
BfaI CTAG 3 cut(s) 708, 1784, 2031
BfmI CTRYAG 2 cut(s) 1570, 1801
BfoI RGCGCY 2 cut(s) 47, 1377
BfrI CTTAAG 1 cut(s) 1892
BglII AGATCT 1 cut(s) 1860
BisI GCNGC 4 cut(s) 29, 42, 346, 571
BlpI GCTNAGC 1 cut(s) 1818
BlsI GCNGC 4 cut(s) 30, 43, 347, 572
BmeT110I CYCGRG 6 cut(s) 490, 541, 955, 1205, 1237, 1660
BmgBI CACGTC 2 cut(s) 906, 1021
BmrI ACTGGG 1 cut(s) 705
BmsI GCATC 3 cut(s) 93, 1652, 2062
BmuI ACTGGG 1 cut(s) 705
BoxI GACNNNNGTC 2 cut(s) 585, 620
BpiI GAAGAC 4 cut(s) 82, 358, 952, 1780
BplI GAGNNNNNCTC 6 cut(s) 535, 567, 547, 579, 1811, 1843
BpmI CTGGAG 4 cut(s) 64, 248, 1376, 1602
Bpu1102I GCTNAGC 1 cut(s) 1818
Bpu14I TTCGAA 2 cut(s) 1268, 1677
BsaAI YACGTR 4 cut(s) 685, 970, 1228, 1687
BsaHI GRCGYC 2 cut(s) 315, 1332
BsaI GGTCTC 2 cut(s) 887, 1620
BsaWI WCCGGW 4 cut(s) 605, 1500, 1713, 1930
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 281, 311
Bse118I RCCGGY 4 cut(s) 650, 1272, 1706, 1930
Bse1I ACTGG 3 cut(s) 700, 1359, 2018
Bse3DI GCAATG 1 cut(s) 1389
BseAI TCCGGA 2 cut(s) 605, 1713
BseBI CCWGG 6 cut(s) 536, 912, 986, 1280, 1290, 1989
BseGI GGATG 3 cut(s) 706, 1140, 1927
BseMI GCAATG 1 cut(s) 1389
BseMII CTCAG 4 cut(s) 659, 1163, 1359, 1809
BseNI ACTGG 3 cut(s) 700, 1359, 2018
BseRI GAGGAG 1 cut(s) 555
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 2 cut(s) 15, 357
BsgI GTGCAG 1 cut(s) 1111
Bsh1236I CGCG 4 cut(s) 247, 518, 570, 890
Bsh1285I CGRYCG 1 cut(s) 624
BshNI GGYRCC 2 cut(s) 1080, 1275
BshTI ACCGGT 1 cut(s) 1930
BsiEI CGRYCG 1 cut(s) 624
BsiHKAI GWGCWC 3 cut(s) 732, 842, 1011
BsiHKCI CYCGRG 6 cut(s) 490, 541, 955, 1205, 1237, 1660
BsiWI CGTACG 2 cut(s) 630, 1511
BslFI GGGAC 8 cut(s) 374, 573, 718, 1274, 1328, 1747, 1925, 1939
BsmAI GTCTC 4 cut(s) 478, 887, 1027, 1620
BsmBI CGTCTC 2 cut(s) 478, 1027
BsmFI GGGAC 8 cut(s) 374, 573, 718, 1274, 1328, 1747, 1925, 1939
Bso31I GGTCTC 2 cut(s) 887, 1620
BsoBI CYCGRG 6 cut(s) 490, 541, 955, 1205, 1237, 1660
Bsp119I TTCGAA 2 cut(s) 1268, 1677
Bsp120I GGGCCC 1 cut(s) 148
Bsp1286I GDGCHC 6 cut(s) 152, 732, 842, 1011, 1569, 1824
Bsp13I TCCGGA 2 cut(s) 605, 1713
Bsp1407I TGTACA 1 cut(s) 1530
Bsp143I GATC 5 cut(s) 790, 1213, 1722, 1860, 1888
Bsp1720I GCTNAGC 1 cut(s) 1818
Bsp19I CCATGG 2 cut(s) 1589, 1977
BspCNI CTCAG 4 cut(s) 660, 1164, 1360, 1810
BspEI TCCGGA 2 cut(s) 605, 1713
BspFNI CGCG 4 cut(s) 247, 518, 570, 890
BspPI GGATC 2 cut(s) 798, 1717
BspT104I TTCGAA 2 cut(s) 1268, 1677
BspT107I GGYRCC 2 cut(s) 1080, 1275
BspTI CTTAAG 1 cut(s) 1892
BspTNI GGTCTC 2 cut(s) 887, 1620
BsrDI GCAATG 1 cut(s) 1389
BsrFI RCCGGY 4 cut(s) 650, 1272, 1706, 1930
BsrGI TGTACA 1 cut(s) 1530
BsrI ACTGG 3 cut(s) 700, 1359, 2018
BssAI RCCGGY 4 cut(s) 650, 1272, 1706, 1930
BssMI GATC 5 cut(s) 790, 1213, 1722, 1860, 1888
BssNI GRCGYC 2 cut(s) 315, 1332
BssSI CACGAG 2 cut(s) 482, 1309
BssT1I CCWWGG 4 cut(s) 500, 933, 1589, 1977
Bst2BI CACGAG 2 cut(s) 482, 1309
Bst2UI CCWGG 6 cut(s) 536, 912, 986, 1280, 1290, 1989
Bst4CI ACNGT 8 cut(s) 156, 357, 603, 734, 1184, 1265, 1870, 2039
Bst6I CTCTTC 1 cut(s) 775
BstACI GRCGYC 2 cut(s) 315, 1332
BstAFI CTTAAG 1 cut(s) 1892
BstAUI TGTACA 1 cut(s) 1530
BstBAI YACGTR 4 cut(s) 685, 970, 1228, 1687
BstBI TTCGAA 2 cut(s) 1268, 1677
BstC8I GCNNGC 4 cut(s) 343, 740, 1565, 1742
BstDEI CTNAG 4 cut(s) 668, 1172, 1368, 1818
BstDSI CCRYGG 5 cut(s) 1589, 1757, 1959, 1977, 2035
BstF5I GGATG 3 cut(s) 706, 1140, 1927
BstFNI CGCG 4 cut(s) 247, 518, 570, 890
BstH2I RGCGCY 2 cut(s) 47, 1377
BstHHI GCGC 3 cut(s) 46, 249, 1376
BstKTI GATC 5 cut(s) 793, 1216, 1725, 1863, 1891
BstMAI GTCTC 4 cut(s) 478, 887, 1027, 1620
BstMBI GATC 5 cut(s) 790, 1213, 1722, 1860, 1888
BstMCI CGRYCG 1 cut(s) 624
BstMWI GCNNNNNNNGC 5 cut(s) 651, 1015, 1560, 1737, 1814
BstNI CCWGG 6 cut(s) 536, 912, 986, 1280, 1290, 1989
BstNSI RCATGY 1 cut(s) 2053
BstPAI GACNNNNGTC 2 cut(s) 585, 620
BstSFI CTRYAG 2 cut(s) 1570, 1801
BstSLI GKGCMC 1 cut(s) 152
BstUI CGCG 4 cut(s) 247, 518, 570, 890
BstV1I GCAGC 2 cut(s) 15, 357
BstV2I GAAGAC 4 cut(s) 82, 358, 952, 1780
BstX2I RGATCY 1 cut(s) 1860
BstXI CCANNNNNNTGG 2 cut(s) 853, 1853
BstYI RGATCY 1 cut(s) 1860
BtgI CCRYGG 5 cut(s) 1589, 1757, 1959, 1977, 2035
BtgZI GCGATG 2 cut(s) 913, 1204
BtrI CACGTC 2 cut(s) 906, 1021
BtsCI GGATG 3 cut(s) 706, 1140, 1927
BtsIMutI CAGTG 2 cut(s) 800, 2011
Cac8I GCNNGC 4 cut(s) 343, 740, 1565, 1742
CfoI GCGC 3 cut(s) 46, 249, 1376
Cfr10I RCCGGY 4 cut(s) 650, 1272, 1706, 1930
Cfr9I CCCGGG 3 cut(s) 1205, 1237, 1660
CpoI CGGWCCG 4 cut(s) 376, 635, 1321, 1648
CseI GACGC 4 cut(s) 323, 538, 584, 1321
CsiI ACCWGGT 2 cut(s) 984, 1278
Csp6I GTAC 8 cut(s) 57, 523, 631, 672, 1081, 1512, 1531, 1684
CspAI ACCGGT 1 cut(s) 1930
CspI CGGWCCG 4 cut(s) 376, 635, 1321, 1648
CviAII CATG 4 cut(s) 430, 1590, 1978, 2050
CviQI GTAC 8 cut(s) 57, 523, 631, 672, 1081, 1512, 1531, 1684
DdeI CTNAG 4 cut(s) 668, 1172, 1368, 1818
DpnI GATC 5 cut(s) 792, 1215, 1724, 1862, 1890
DpnII GATC 5 cut(s) 790, 1213, 1722, 1860, 1888
DraIII CACNNNGTG 1 cut(s) 1605
EaeI YGGCCR 3 cut(s) 103, 208, 740
Eam1104I CTCTTC 1 cut(s) 775
EarI CTCTTC 1 cut(s) 775
EciI GGCGGA 2 cut(s) 864, 1759
Ecl136II GAGCTC 2 cut(s) 840, 1009
Eco130I CCWWGG 4 cut(s) 500, 933, 1589, 1977
Eco147I AGGCCT 1 cut(s) 1987
Eco24I GRGCYC 5 cut(s) 152, 842, 1011, 1569, 1824
Eco31I GGTCTC 2 cut(s) 887, 1620
Eco32I GATATC 1 cut(s) 1387
Eco53kI GAGCTC 2 cut(s) 840, 1009
Eco57I CTGAAG 2 cut(s) 568, 1779
Eco72I CACGTG 1 cut(s) 970
Eco88I CYCGRG 6 cut(s) 490, 541, 955, 1205, 1237, 1660
EcoICRI GAGCTC 2 cut(s) 840, 1009
EcoO109I RGGNCCY 6 cut(s) 148, 388, 664, 1315, 1657, 1939
EcoRI GAATTC 1 cut(s) 998
EcoRII CCWGG 6 cut(s) 534, 910, 984, 1278, 1288, 1987
EcoRV GATATC 1 cut(s) 1387
EcoT14I CCWWGG 4 cut(s) 500, 933, 1589, 1977
EcoT22I ATGCAT 1 cut(s) 2055
EcoT38I GRGCYC 5 cut(s) 152, 842, 1011, 1569, 1824
ErhI CCWWGG 4 cut(s) 500, 933, 1589, 1977
Esp3I CGTCTC 2 cut(s) 478, 1027
FaeI CATG 4 cut(s) 433, 1593, 1981, 2053
FalI AAGNNNNNCTT 2 cut(s) 1319, 1351
FaqI GGGAC 8 cut(s) 374, 573, 718, 1274, 1328, 1747, 1925, 1939
FatI CATG 4 cut(s) 429, 1589, 1977, 2049
FauI CCCGC 5 cut(s) 907, 1556, 1661, 1724, 1733
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 4 cut(s) 29, 42, 346, 571
FokI GGATG 3 cut(s) 713, 1127, 1934
FriOI GRGCYC 5 cut(s) 152, 842, 1011, 1569, 1824
Fsp4HI GCNGC 4 cut(s) 29, 42, 346, 571
FspBI CTAG 3 cut(s) 708, 1784, 2031
GlaI GCGC 3 cut(s) 45, 248, 1375
GluI GCNGC 4 cut(s) 29, 42, 346, 571
GsuI CTGGAG 4 cut(s) 64, 248, 1376, 1602
HaeII RGCGCY 2 cut(s) 47, 1377
HgaI GACGC 4 cut(s) 323, 538, 584, 1321
HhaI GCGC 3 cut(s) 46, 249, 1376
Hin1I GRCGYC 2 cut(s) 315, 1332
Hin1II CATG 4 cut(s) 433, 1593, 1981, 2053
Hin6I GCGC 3 cut(s) 44, 247, 1374
HinP1I GCGC 3 cut(s) 44, 247, 1374
HincII GTYRAC 4 cut(s) 754, 1414, 1437, 1578
HindII GTYRAC 4 cut(s) 754, 1414, 1437, 1578
HindIII AAGCTT 1 cut(s) 1124
HpaI GTTAAC 1 cut(s) 1578
Hpy188I TCNGA 7 cut(s) 253, 376, 555, 837, 1648, 1798, 1888
Hpy99I CGWCG 8 cut(s) 77, 317, 518, 532, 578, 758, 766, 1184
HpyAV CCTTC 6 cut(s) 427, 1109, 1203, 1309, 1476, 1577
HpyCH4III ACNGT 8 cut(s) 156, 357, 603, 734, 1184, 1265, 1870, 2039
HpyCH4V TGCA 5 cut(s) 1092, 1364, 1643, 2011, 2053
HpyF10VI GCNNNNNNNGC 5 cut(s) 651, 1015, 1560, 1737, 1814
HpyF3I CTNAG 4 cut(s) 668, 1172, 1368, 1818
Hsp92I GRCGYC 2 cut(s) 315, 1332
Hsp92II CATG 4 cut(s) 433, 1593, 1981, 2053
HspAI GCGC 3 cut(s) 44, 247, 1374
KflI GGGWCCC 2 cut(s) 1315, 1939
Kpn2I TCCGGA 2 cut(s) 605, 1713
KpnI GGTACC 1 cut(s) 1084
KspAI GTTAAC 1 cut(s) 1578
Kzo9I GATC 5 cut(s) 790, 1213, 1722, 1860, 1888
LmnI GCTCC 9 cut(s) 36, 83, 254, 406, 845, 973, 1006, 1418, 1671
Lsp1109I GCAGC 2 cut(s) 15, 357
LweI GCATC 3 cut(s) 93, 1652, 2062
MabI ACCWGGT 2 cut(s) 984, 1278
MaeI CTAG 3 cut(s) 708, 1784, 2031
MaeIII GTNAC 5 cut(s) 277, 547, 597, 868, 906
MalI GATC 5 cut(s) 792, 1215, 1724, 1862, 1890
MboI GATC 5 cut(s) 790, 1213, 1722, 1860, 1888
MboII GAAGA 7 cut(s) 82, 121, 363, 792, 957, 1124, 1780
MflI RGATCY 1 cut(s) 1860
MhlI GDGCHC 6 cut(s) 152, 732, 842, 1011, 1569, 1824
MluCI AATT 8 cut(s) 199, 328, 816, 998, 1609, 1627, 1679, 1909
MluI ACGCGT 1 cut(s) 888
MlyI GAGTC 6 cut(s) 482, 533, 544, 723, 876, 1078
MmeI TCCRAC 3 cut(s) 276, 324, 1857
Mph1103I ATGCAT 1 cut(s) 2055
MroI TCCGGA 2 cut(s) 605, 1713
MroXI GAANNNNTTC 1 cut(s) 998
MseI TTAA 6 cut(s) 398, 1404, 1428, 1577, 1893, 1953
MslI CAYNNNNRTG 3 cut(s) 683, 1933, 2058
MspA1I CMGCKG 2 cut(s) 348, 1817
MspCI CTTAAG 1 cut(s) 1892
MvaI CCWGG 6 cut(s) 536, 912, 986, 1280, 1290, 1989
MvnI CGCG 4 cut(s) 247, 518, 570, 890
MwoI GCNNNNNNNGC 5 cut(s) 651, 1015, 1560, 1737, 1814
NcoI CCATGG 2 cut(s) 1589, 1977
NdeII GATC 5 cut(s) 790, 1213, 1722, 1860, 1888
NlaIII CATG 4 cut(s) 433, 1593, 1981, 2053
NmeAIII GCCGAG 3 cut(s) 768, 994, 1402
NmuCI GTSAC 5 cut(s) 277, 547, 597, 868, 906
NsiI ATGCAT 1 cut(s) 2055
NspI RCATGY 1 cut(s) 2053
NspV TTCGAA 2 cut(s) 1268, 1677
OliI CACNNNNGTG 1 cut(s) 1933
PaeR7I CTCGAG 2 cut(s) 541, 955
PceI AGGCCT 1 cut(s) 1987
PcsI WCGNNNNNNNCGW 4 cut(s) 192, 635, 1064, 1683
PdmI GAANNNNTTC 1 cut(s) 998
PfeI GAWTC 9 cut(s) 4, 142, 231, 418, 609, 758, 1064, 1176, 1690
Pfl23II CGTACG 2 cut(s) 630, 1511
PflFI GACNNNGTC 1 cut(s) 1319
PfoI TCCNGGA 1 cut(s) 1288
PinAI ACCGGT 1 cut(s) 1930
PkrI GCNGC 4 cut(s) 30, 43, 347, 572
PleI GAGTC 6 cut(s) 482, 533, 544, 722, 875, 1077
PmaCI CACGTG 1 cut(s) 970
PmlI CACGTG 1 cut(s) 970
PpsI GAGTC 6 cut(s) 482, 533, 544, 722, 875, 1077
Ppu21I YACGTR 4 cut(s) 685, 970, 1228, 1687
PpuMI RGGWCCY 5 cut(s) 388, 664, 1315, 1657, 1939
PshAI GACNNNNGTC 2 cut(s) 585, 620
PshBI ATTAAT 1 cut(s) 1404
Psp124BI GAGCTC 2 cut(s) 842, 1011
Psp5II RGGWCCY 5 cut(s) 388, 664, 1315, 1657, 1939
Psp6I CCWGG 6 cut(s) 534, 910, 984, 1278, 1288, 1987
PspCI CACGTG 1 cut(s) 970
PspGI CCWGG 6 cut(s) 534, 910, 984, 1278, 1288, 1987
PspLI CGTACG 2 cut(s) 630, 1511
PspOMI GGGCCC 1 cut(s) 148
PspPPI RGGWCCY 5 cut(s) 388, 664, 1315, 1657, 1939
PspXI VCTCGAGB 2 cut(s) 541, 955
PsuI RGATCY 1 cut(s) 1860
PsyI GACNNNGTC 1 cut(s) 1319
PvuII CAGCTG 1 cut(s) 1817
RsaI GTAC 8 cut(s) 58, 524, 632, 673, 1082, 1513, 1532, 1685
RsaNI GTAC 8 cut(s) 57, 523, 631, 672, 1081, 1512, 1531, 1684
RseI CAYNNNNRTG 3 cut(s) 683, 1933, 2058
Rsr2I CGGWCCG 4 cut(s) 376, 635, 1321, 1648
RsrII CGGWCCG 4 cut(s) 376, 635, 1321, 1648
SacI GAGCTC 2 cut(s) 842, 1011
SalI GTCGAC 1 cut(s) 752
SaqAI TTAA 6 cut(s) 398, 1404, 1428, 1577, 1893, 1953
SatI GCNGC 4 cut(s) 29, 42, 346, 571
Sau3AI GATC 5 cut(s) 790, 1213, 1722, 1860, 1888
SchI GAGTC 6 cut(s) 482, 533, 544, 723, 876, 1078
SduI GDGCHC 6 cut(s) 152, 732, 842, 1011, 1569, 1824
SexAI ACCWGGT 2 cut(s) 984, 1278
SfaNI GCATC 3 cut(s) 93, 1652, 2062
SfcI CTRYAG 2 cut(s) 1570, 1801
Sfr274I CTCGAG 2 cut(s) 541, 955
SfuI TTCGAA 2 cut(s) 1268, 1677
SgrAI CRCCGGYG 1 cut(s) 1930
SlaI CTCGAG 2 cut(s) 541, 955
SmaI CCCGGG 3 cut(s) 1207, 1239, 1662
SmiMI CAYNNNNRTG 3 cut(s) 683, 1933, 2058
SmlI CTYRAG 3 cut(s) 541, 955, 1892
SmoI CTYRAG 3 cut(s) 541, 955, 1892
Sse9I AATT 8 cut(s) 199, 328, 816, 998, 1609, 1627, 1679, 1909
SseBI AGGCCT 1 cut(s) 1987
SspMI CTAG 3 cut(s) 708, 1784, 2031
SstI GAGCTC 2 cut(s) 842, 1011
StuI AGGCCT 1 cut(s) 1987
StyI CCWWGG 4 cut(s) 500, 933, 1589, 1977
TaaI ACNGT 8 cut(s) 156, 357, 603, 734, 1184, 1265, 1870, 2039
TaqII GACCGA 2 cut(s) 652, 1665
TasI AATT 8 cut(s) 199, 328, 816, 998, 1609, 1627, 1679, 1909
TatI WGTACW 2 cut(s) 522, 1530
TauI GCSGC 2 cut(s) 44, 573
TfiI GAWTC 9 cut(s) 4, 142, 231, 418, 609, 758, 1064, 1176, 1690
Tru1I TTAA 6 cut(s) 398, 1404, 1428, 1577, 1893, 1953
Tru9I TTAA 6 cut(s) 398, 1404, 1428, 1577, 1893, 1953
TscAI CASTG 2 cut(s) 800, 2018
TseFI GTSAC 5 cut(s) 277, 547, 597, 868, 906
TseI GCWGC 2 cut(s) 28, 345
Tsp45I GTSAC 5 cut(s) 277, 547, 597, 868, 906
TspDTI ATGAA 6 cut(s) 17, 446, 916, 1011, 1042, 1939
TspMI CCCGGG 3 cut(s) 1205, 1237, 1660
TspRI CASTG 2 cut(s) 800, 2018
Tth111I GACNNNGTC 1 cut(s) 1319
Vha464I CTTAAG 1 cut(s) 1892
VspI ATTAAT 1 cut(s) 1404
XapI RAATTY 2 cut(s) 998, 1909
XceI RCATGY 1 cut(s) 2053
XcmI CCANNNNNNNNNTGG 4 cut(s) 850, 853, 1286, 1626
XhoI CTCGAG 2 cut(s) 541, 955
XmaI CCCGGG 3 cut(s) 1205, 1237, 1660
XmiI GTMKAC 1 cut(s) 753
XmnI GAANNNNTTC 1 cut(s) 998
XspI CTAG 3 cut(s) 708, 1784, 2031
Zsp2I ATGCAT 1 cut(s) 2055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.