Rroxscaffold_7G00178600

WD40-like Beta Propeller Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016112
Physical Location & Seq
Reverse (-)
18234436 .. 18236529
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178600.1

Sequence Viewer

Length: 2094 bp
ATGAAACCCAATTCAATTCTCTATTTGTTGCTCGATTTGCTGGTGCTTAGTTTCAGTTTAGCGGCGGAACATGGCCCTTCCAGCATCGTCTTCACCACCAACGGCAGATTAGATTACCATTTCGACATCTTCACCCTCCCGATCGGTCACCCACCGCACCCAACCACCGAGACCCGAATCACAGATGGCCAGTCCGTCAACTTCAACGGCCACTTCCCCTCCTCCACTTTCTTTCCCAAACAAACCCGAATCCGATCCCCCACCCGACCCGACCCCTCTCTCCAGATCATCTACGTCACCGAGAGAAACGGCTTTTCCAACATCTACTACGACGCCGTTTACTTCGATTCTCCGTCGAGCATCAGGAAAAGGTCCGCCCTTGAAGTCGTGGACCGGGTTCAGGTCCCTCTGCTGGGCTTGGACGGGGTTTCGATGAAAGACAAGCCCAGTTTGACAGGGGAGTATTTGGTATACGTGTCCACTCACGAAGACTCCGGCGTGCCCAGGACGAGTTCTGCTGCGGTTTACTCGACCGAGTTGAACTCGGGTTTGACCCGGCGGCTGACTCCTTACGGCGTCGCGGACTTCAGCCCCGCGGTGTCGCCGTCTGGGTTTTGGACGGCGGCGGCGTCGTATGGGCCGAAAGGTTGGGACGGCGACGTCGAGGAGCTCAGTACAGACATCTACGTGTTCTTGACTCGGGACGGGACTCGCCGAGTCAAGGTGGTCGAGCACGGCGGCTGGCCGAGTTGGGTTGACGAGTCAACGATTTACTTTCACAGAAGAGGAGAAGACCAGTGGTGGAGTATTTATCGGGCGATTTTACCGAGAGGGGGGCCGACTTCTGCCGAGTCAGTGGTGGTGGAGCGAGTTACGCCGCCGGGTCTCCACGCGTTCACACCCGCCACGTCACCGGGGAACCACGACTTCATCGCCGTGGCCACAAGAAGACCCACCACGAGCTTCCGCCACGTGGAGCTGTTCGACTTGGCGAAGGGCGAGTTCAGGGAGCTGACTCGGCTCGTCGCGCCACGTACCCACCACTACAACCCGTTCATCTCCCCCGATTCGAGTCGGGTCGGGTACCACAAGTGCAGAGGCAACGCGAACGGGAAGAAAAGCCGGAAGCTTTTCCTTCAGAATATCCACAGCTCAATTCCGAACCTGTCCGTGCTCAGAATCGACGGCACGTTTCCTTCGTTTTCACCCGCTGGTGACCGTATCGCCTTCGCGAACTTACCGGGTATCTACGTGGTGAACCGCGACGGTTCGAACCGGCGACAGGTCTACCCTGGAAAAGCTTTCTCGACCGCCTGGGACCCGGTTCGCAAGGGCGTCATATACACCGGCGCCGGACCGGAATTTGCACCGGAGAGCGCTGAGGTTGATATCATCTCCATCGACGTTGACCAAATCGCTTTCAAGAAGTTGACCACAAACGGAAAGAACAACGCCTTCCCTTCACCCTCGCCCGACGGAAAGCGGATCGTCTTCCGGTCGGGTCTGTCGGGTCACAAAAACCTGTACATCATAGACGCCGAGGAAGGTGAGACACTTGGGCTCCAGAGACTGACGGAGGGTCCATGGACGGACACGATGTGTAACTGGTCGCCGGACGGCGACTGGATCGCGTTCGCGTCGGACCGGGAGAACCCGGGTAGCGGGAGCTTCGAGTTGTACGTGATCCACCCGAATGGAACCGGGTTAAGGAAAGTGATCCAAAGCGGGTCGGGTGGACGGACTAACCACCCGTGGTTCAGCCCGGATGGGAAGAGCTTGGTTTTCACTTCGGACTATGGGGGCATATCAGCTGAGCCCATCTCAAACCCGCATCATTACCAGCCGTACGGTGAGATTTTTACTGTGAAATTGGACGGCTCTGATGTTACGAGGTTGACACAGAATTCGTTTGAGGATGGAACACCGGTGTGGGTCCCCAGCTTCATCAGGCCGTCGGATGTAGAGTGGCCTATTGATAGGCCTAGCTGCAGCTTTGATGATTTGCACTGCCTCAGTGATTTTCCTAGCTATGGTCAGAATGGTGGTGTTGGGGGTGTTCCTTGGCTCTTAAGCAAGCCTCAATGTGGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PD40

Protein Analysis

697

Amino Acids

76.93

Weight (kDa)

6.32

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tricorn_N PF26549 462 - 645 6.4e-20 Tricorn protease N-terminal beta propeller domain
Tricorn_2nd PF26550 463 - 598 1.4e-08 Tricorn protease second beta propeller domain
PD40 PF07676 475 - 509 5.9e-06 WD40-like Beta Propeller Repeat
Tricorn_2nd PF26550 490 - 598 2.1e-07 Tricorn protease second beta propeller domain
PD40 PF07676 522 - 561 9.6e-08 WD40-like Beta Propeller Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016112)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21680
fragaria_vesca FvH4_2g27620
malus_domestica MD15G1344100.v1.1
prunus_persica Prupe.1G491500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0296441
rosa_laevigata RLG00000011693
rosa_multiflora Rmu_sc0028875.1_g000001
rosa_roxburghii Rroxscaffold_7G00171530 Rroxscaffold_7G00178600
rosa_rugosa Rorug06G0262400
rosa_samantha Rh6AG373600 Rh6BG382400 Rh6CG387200 Rh6DG374900
rosa_wichuraiana Rw6G032600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 659
AatII GACGTC 1 cut(s) 663
Acc65I GGTACC 1 cut(s) 1083
AccB1I GGYRCC 2 cut(s) 1083, 1349
AccI GTMKAC 2 cut(s) 471, 1287
AccII CGCG 9 cut(s) 581, 596, 893, 1028, 1106, 1232, 1263, 1631, 1637
AclWI GGATC 5 cut(s) 249, 1493, 1634, 1678, 1711
AcoI YGGCCR 4 cut(s) 187, 208, 743, 939
AcsI RAATTY 2 cut(s) 1361, 1903
AcuI CTGAAG 2 cut(s) 571, 1121
AcvI CACGTG 1 cut(s) 973
AcyI GRCGYC 7 cut(s) 333, 576, 629, 660, 1335, 1350, 1536
AdeI CACNNNGTG 1 cut(s) 1599
AfaI GTAC 6 cut(s) 676, 1036, 1085, 1526, 1679, 1847
AfeI AGCGCT 1 cut(s) 1378
AflII CTTAAG 1 cut(s) 2068
AflIII ACRYGT 3 cut(s) 474, 687, 891
AgeI ACCGGT 1 cut(s) 1924
AgsI TTSAA 5 cut(s) 15, 205, 383, 541, 1423
AhdI GACNNNNNGTC 1 cut(s) 1578
AjiI CACGTC 1 cut(s) 909
AjnI CCWGG 3 cut(s) 503, 1291, 1313
AleI CACNNNNGTG 1 cut(s) 1927
Alw21I GWGCWC 3 cut(s) 672, 735, 1176
Alw26I GTCTC 4 cut(s) 164, 890, 1544, 1561
AlwI GGATC 5 cut(s) 249, 1493, 1634, 1678, 1711
AlwNI CAGNNNCTG 1 cut(s) 1570
Ama87I CYCGRG 3 cut(s) 544, 699, 1654
Aor51HI AGCGCT 1 cut(s) 1378
ApeKI GCWGC 3 cut(s) 518, 1986, 1989
ApoI RAATTY 2 cut(s) 1361, 1903
ArsI GACNNNNNNTTYG 2 cut(s) 1888, 1920
AsiGI ACCGGT 1 cut(s) 1924
Asp700I GAANNNNTTC 1 cut(s) 1130
Asp718I GGTACC 1 cut(s) 1083
AspLEI GCGC 3 cut(s) 1030, 1352, 1379
AsuII TTCGAA 1 cut(s) 1271
AvaI CYCGRG 3 cut(s) 544, 699, 1654
AvaII GGWCC 8 cut(s) 372, 391, 403, 1318, 1355, 1580, 1642, 1933
BaeGI GKGCMC 1 cut(s) 504
BalI TGGCCA 2 cut(s) 189, 941
BanI GGYRCC 2 cut(s) 1083, 1349
BanII GRGCYC 3 cut(s) 672, 1563, 1818
BauI CACGAG 1 cut(s) 958
BbrPI CACGTG 1 cut(s) 973
BbsI GAAGAC 5 cut(s) 82, 495, 798, 955, 1483
Bbv12I GWGCWC 3 cut(s) 672, 735, 1176
BbvCI CCTCAGC 1 cut(s) 1380
BbvI GCAGC 3 cut(s) 505, 1973, 2001
BccI CCATC 5 cut(s) 179, 1406, 1760, 1826, 1910
BciT130I CCWGG 3 cut(s) 505, 1293, 1315
BcoDI GTCTC 4 cut(s) 164, 890, 1544, 1561
BfaI CTAG 2 cut(s) 1983, 2025
BfmI CTRYAG 1 cut(s) 1987
BfoI RGCGCY 2 cut(s) 1353, 1380
BfrI CTTAAG 1 cut(s) 2068
BisI GCNGC 9 cut(s) 63, 519, 560, 624, 627, 739, 878, 1987, 1990
BlpI GCTNAGC 1 cut(s) 1812
BlsI GCNGC 9 cut(s) 64, 520, 561, 625, 628, 740, 879, 1988, 1991
Bme18I GGWCC 8 cut(s) 372, 391, 403, 1318, 1355, 1580, 1642, 1933
BmeRI GACNNNNNGTC 1 cut(s) 1578
BmeT110I CYCGRG 3 cut(s) 544, 699, 1654
BmgBI CACGTC 1 cut(s) 909
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 3 cut(s) 93, 369, 1840
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 5 cut(s) 82, 495, 798, 955, 1483
BplI GAGNNNNNCTC 4 cut(s) 527, 559, 1805, 1837
BpmI CTGGAG 2 cut(s) 266, 1547
Bpu10I CCTNAGC 1 cut(s) 1380
Bpu1102I GCTNAGC 1 cut(s) 1812
Bpu14I TTCGAA 1 cut(s) 1271
BsaAI YACGTR 6 cut(s) 475, 688, 973, 1034, 1252, 1681
BsaHI GRCGYC 7 cut(s) 333, 576, 629, 660, 1335, 1350, 1536
BsaI GGTCTC 2 cut(s) 164, 890
BsaWI WCCGGW 4 cut(s) 1357, 1369, 1494, 1924
BsaXI ACNNNNNCTCC 6 cut(s) 203, 233, 476, 506, 1545, 1575
Bse118I RCCGGY 3 cut(s) 1275, 1346, 1924
Bse1I ACTGG 5 cut(s) 190, 447, 796, 1610, 1628
BseBI CCWGG 3 cut(s) 505, 1293, 1315
BseGI GGATG 3 cut(s) 1771, 1921, 1963
BseMII CTCAG 5 cut(s) 685, 1189, 1371, 1803, 2026
BseNI ACTGG 5 cut(s) 190, 447, 796, 1610, 1628
BseRI GAGGAG 3 cut(s) 211, 680, 801
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 3 cut(s) 505, 1973, 2001
BseYI CCCAGC 2 cut(s) 412, 1937
BsgI GTGCAG 1 cut(s) 1114
Bsh1236I CGCG 9 cut(s) 581, 596, 893, 1028, 1106, 1232, 1263, 1631, 1637
Bsh1285I CGRYCG 4 cut(s) 144, 534, 1311, 1499
BshNI GGYRCC 2 cut(s) 1083, 1349
BshTI ACCGGT 1 cut(s) 1924
BsiEI CGRYCG 4 cut(s) 144, 534, 1311, 1499
BsiHKAI GWGCWC 3 cut(s) 672, 735, 1176
BsiHKCI CYCGRG 3 cut(s) 544, 699, 1654
BsiWI CGTACG 1 cut(s) 1845
BslFI GGGAC 6 cut(s) 389, 665, 716, 721, 1331, 1919
BsmAI GTCTC 4 cut(s) 164, 890, 1544, 1561
BsmFI GGGAC 6 cut(s) 389, 665, 716, 721, 1331, 1919
Bso31I GGTCTC 2 cut(s) 164, 890
BsoBI CYCGRG 3 cut(s) 544, 699, 1654
Bsp119I TTCGAA 1 cut(s) 1271
Bsp1286I GDGCHC 6 cut(s) 504, 672, 735, 1176, 1563, 1818
Bsp1407I TGTACA 1 cut(s) 1524
Bsp143I GATC 7 cut(s) 141, 254, 285, 1485, 1626, 1683, 1716
Bsp1720I GCTNAGC 1 cut(s) 1812
Bsp19I CCATGG 1 cut(s) 1583
Bsp68I TCGCGA 1 cut(s) 1232
BspCNI CTCAG 5 cut(s) 684, 1188, 1372, 1804, 2025
BspFNI CGCG 9 cut(s) 581, 596, 893, 1028, 1106, 1232, 1263, 1631, 1637
BspMAI CTGCAG 1 cut(s) 1991
BspPI GGATC 5 cut(s) 249, 1493, 1634, 1678, 1711
BspQI GCTCTTC 1 cut(s) 1766
BspT104I TTCGAA 1 cut(s) 1271
BspT107I GGYRCC 2 cut(s) 1083, 1349
BspTI CTTAAG 1 cut(s) 2068
BspTNI GGTCTC 2 cut(s) 164, 890
BsrFI RCCGGY 3 cut(s) 1275, 1346, 1924
BsrGI TGTACA 1 cut(s) 1524
BsrI ACTGG 5 cut(s) 190, 447, 796, 1610, 1628
BssAI RCCGGY 3 cut(s) 1275, 1346, 1924
BssMI GATC 7 cut(s) 141, 254, 285, 1485, 1626, 1683, 1716
BssNAI GTATAC 1 cut(s) 472
BssNI GRCGYC 7 cut(s) 333, 576, 629, 660, 1335, 1350, 1536
BssSI CACGAG 1 cut(s) 958
BssT1I CCWWGG 2 cut(s) 1583, 2060
Bst1107I GTATAC 1 cut(s) 472
Bst2BI CACGAG 1 cut(s) 958
Bst2UI CCWGG 3 cut(s) 505, 1293, 1315
Bst4CI ACNGT 4 cut(s) 1220, 1268, 1850, 1864
Bst6I CTCTTC 2 cut(s) 778, 1766
BstACI GRCGYC 7 cut(s) 333, 576, 629, 660, 1335, 1350, 1536
BstAFI CTTAAG 1 cut(s) 2068
BstAUI TGTACA 1 cut(s) 1524
BstBAI YACGTR 6 cut(s) 475, 688, 973, 1034, 1252, 1681
BstBI TTCGAA 1 cut(s) 1271
BstC8I GCNNGC 3 cut(s) 500, 743, 2075
BstDEI CTNAG 6 cut(s) 47, 671, 1175, 1380, 1812, 2012
BstDSI CCRYGG 4 cut(s) 594, 936, 1583, 1751
BstEII GGTNACC 2 cut(s) 146, 1214
BstF5I GGATG 3 cut(s) 1771, 1921, 1963
BstFNI CGCG 9 cut(s) 581, 596, 893, 1028, 1106, 1232, 1263, 1631, 1637
BstH2I RGCGCY 2 cut(s) 1353, 1380
BstHHI GCGC 3 cut(s) 1030, 1352, 1379
BstKTI GATC 7 cut(s) 144, 257, 288, 1488, 1629, 1686, 1719
BstMAI GTCTC 4 cut(s) 164, 890, 1544, 1561
BstMBI GATC 7 cut(s) 141, 254, 285, 1485, 1626, 1683, 1716
BstMCI CGRYCG 4 cut(s) 144, 534, 1311, 1499
BstMWI GCNNNNNNNGC 5 cut(s) 37, 81, 874, 1018, 1027
BstNI CCWGG 3 cut(s) 505, 1293, 1315
BstPI GGTNACC 2 cut(s) 146, 1214
BstSFI CTRYAG 1 cut(s) 1987
BstSLI GKGCMC 1 cut(s) 504
BstUI CGCG 9 cut(s) 581, 596, 893, 1028, 1106, 1232, 1263, 1631, 1637
BstV1I GCAGC 3 cut(s) 505, 1973, 2001
BstV2I GAAGAC 5 cut(s) 82, 495, 798, 955, 1483
BstXI CCANNNNNNTGG 1 cut(s) 1694
BstZ17I GTATAC 1 cut(s) 472
BtgI CCRYGG 4 cut(s) 594, 936, 1583, 1751
BtgZI GCGATG 1 cut(s) 916
BtrI CACGTC 1 cut(s) 909
BtsCI GGATG 3 cut(s) 1771, 1921, 1963
BtsI GCAGTG 1 cut(s) 2005
BtsIMutI CAGTG 4 cut(s) 803, 861, 2005, 2020
BtuMI TCGCGA 1 cut(s) 1232
Cac8I GCNNGC 3 cut(s) 500, 743, 2075
CaiI CAGNNNCTG 1 cut(s) 1570
CfoI GCGC 3 cut(s) 1030, 1352, 1379
Cfr10I RCCGGY 3 cut(s) 1275, 1346, 1924
Cfr42I CCGCGG 1 cut(s) 597
Cfr9I CCCGGG 1 cut(s) 1654
CpoI CGGWCCG 2 cut(s) 1355, 1642
CseI GACGC 6 cut(s) 341, 565, 618, 1324, 1544, 1626
Csp6I GTAC 6 cut(s) 675, 1035, 1084, 1525, 1678, 1846
CspAI ACCGGT 1 cut(s) 1924
CspI CGGWCCG 2 cut(s) 1355, 1642
CviAII CATG 2 cut(s) 71, 1584
CviQI GTAC 6 cut(s) 675, 1035, 1084, 1525, 1678, 1846
DdeI CTNAG 6 cut(s) 47, 671, 1175, 1380, 1812, 2012
DinI GGCGCC 1 cut(s) 1351
DpnI GATC 7 cut(s) 143, 256, 287, 1487, 1628, 1685, 1718
DpnII GATC 7 cut(s) 141, 254, 285, 1485, 1626, 1683, 1716
DraIII CACNNNGTG 1 cut(s) 1599
DrdI GACNNNNNNGTC 1 cut(s) 659
DriI GACNNNNNGTC 1 cut(s) 1578
DseDI GACNNNNNNGTC 1 cut(s) 659
EaeI YGGCCR 4 cut(s) 187, 208, 743, 939
Eam1104I CTCTTC 2 cut(s) 778, 1766
Eam1105I GACNNNNNGTC 1 cut(s) 1578
EarI CTCTTC 2 cut(s) 778, 1766
EciI GGCGGA 3 cut(s) 80, 364, 956
Ecl136II GAGCTC 1 cut(s) 670
Eco130I CCWWGG 2 cut(s) 1583, 2060
Eco147I AGGCCT 1 cut(s) 1981
Eco24I GRGCYC 3 cut(s) 672, 1563, 1818
Eco31I GGTCTC 2 cut(s) 164, 890
Eco32I GATATC 1 cut(s) 1390
Eco47I GGWCC 8 cut(s) 372, 391, 403, 1318, 1355, 1580, 1642, 1933
Eco47III AGCGCT 1 cut(s) 1378
Eco53kI GAGCTC 1 cut(s) 670
Eco57I CTGAAG 2 cut(s) 571, 1121
Eco72I CACGTG 1 cut(s) 973
Eco88I CYCGRG 3 cut(s) 544, 699, 1654
Eco91I GGTNACC 2 cut(s) 146, 1214
EcoICRI GAGCTC 1 cut(s) 670
EcoO109I RGGNCCY 3 cut(s) 403, 1318, 1933
EcoO65I GGTNACC 2 cut(s) 146, 1214
EcoRI GAATTC 1 cut(s) 1903
EcoRII CCWGG 3 cut(s) 503, 1291, 1313
EcoRV GATATC 1 cut(s) 1390
EcoT14I CCWWGG 2 cut(s) 1583, 2060
EcoT38I GRGCYC 3 cut(s) 672, 1563, 1818
EgeI GGCGCC 1 cut(s) 1351
EheI GGCGCC 1 cut(s) 1351
ErhI CCWWGG 2 cut(s) 1583, 2060
FaeI CATG 2 cut(s) 74, 1587
FaqI GGGAC 6 cut(s) 389, 665, 716, 721, 1331, 1919
FatI CATG 2 cut(s) 70, 1583
FauI CCCGC 6 cut(s) 601, 910, 1216, 1655, 1718, 1836
FblI GTMKAC 2 cut(s) 471, 1287
Fnu4HI GCNGC 9 cut(s) 63, 519, 560, 624, 627, 739, 878, 1987, 1990
FokI GGATG 3 cut(s) 1778, 1928, 1970
FriOI GRGCYC 3 cut(s) 672, 1563, 1818
Fsp4HI GCNGC 9 cut(s) 63, 519, 560, 624, 627, 739, 878, 1987, 1990
FspBI CTAG 2 cut(s) 1983, 2025
GlaI GCGC 3 cut(s) 1029, 1351, 1378
GluI GCNGC 9 cut(s) 63, 519, 560, 624, 627, 739, 878, 1987, 1990
GsaI CCCAGC 2 cut(s) 416, 1941
GsuI CTGGAG 2 cut(s) 266, 1547
HaeII RGCGCY 2 cut(s) 1353, 1380
HgaI GACGC 6 cut(s) 341, 565, 618, 1324, 1544, 1626
HhaI GCGC 3 cut(s) 1030, 1352, 1379
Hin1I GRCGYC 7 cut(s) 333, 576, 629, 660, 1335, 1350, 1536
Hin1II CATG 2 cut(s) 74, 1587
Hin6I GCGC 3 cut(s) 1028, 1350, 1377
HinP1I GCGC 3 cut(s) 1028, 1350, 1377
HincII GTYRAC 6 cut(s) 199, 757, 765, 1408, 1431, 1896
HindII GTYRAC 6 cut(s) 199, 757, 765, 1408, 1431, 1896
HindIII AAGCTT 2 cut(s) 1127, 1299
Hpy188I TCNGA 9 cut(s) 254, 1140, 1161, 1178, 1642, 1792, 1882, 1957, 2037
HpyAV CCTTC 8 cut(s) 87, 988, 1145, 1206, 1237, 1465, 1470, 1538
HpyCH4III ACNGT 4 cut(s) 1220, 1268, 1850, 1864
HpyCH4V TGCA 5 cut(s) 1095, 1367, 1989, 2005, 2090
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 81, 874, 1018, 1027
HpyF3I CTNAG 6 cut(s) 47, 671, 1175, 1380, 1812, 2012
Hsp92I GRCGYC 7 cut(s) 333, 576, 629, 660, 1335, 1350, 1536
Hsp92II CATG 2 cut(s) 74, 1587
HspAI GCGC 3 cut(s) 1028, 1350, 1377
KasI GGCGCC 1 cut(s) 1349
KflI GGGWCCC 2 cut(s) 1318, 1933
KpnI GGTACC 1 cut(s) 1087
KspI CCGCGG 1 cut(s) 597
Kzo9I GATC 7 cut(s) 141, 254, 285, 1485, 1626, 1683, 1716
LguI GCTCTTC 1 cut(s) 1766
LmnI GCTCC 6 cut(s) 667, 865, 976, 1009, 1566, 1665
Lsp1109I GCAGC 3 cut(s) 505, 1973, 2001
LweI GCATC 3 cut(s) 93, 369, 1840
MaeI CTAG 2 cut(s) 1983, 2025
MaeIII GTNAC 8 cut(s) 146, 295, 871, 909, 1214, 1511, 1601, 1885
MalI GATC 7 cut(s) 143, 256, 287, 1487, 1628, 1685, 1718
MboI GATC 7 cut(s) 141, 254, 285, 1485, 1626, 1683, 1716
MboII GAAGA 9 cut(s) 82, 121, 500, 795, 803, 960, 1126, 1483, 1783
MhlI GDGCHC 6 cut(s) 504, 672, 735, 1176, 1563, 1818
MlsI TGGCCA 2 cut(s) 189, 941
MluCI AATT 6 cut(s) 10, 15, 1155, 1361, 1868, 1903
MluI ACGCGT 1 cut(s) 891
MluNI TGGCCA 2 cut(s) 189, 941
Mly113I GGCGCC 1 cut(s) 1350
MlyI GAGTC 9 cut(s) 485, 559, 691, 703, 726, 770, 860, 1009, 1081
MmeI TCCRAC 3 cut(s) 342, 1620, 1935
Mox20I TGGCCA 2 cut(s) 189, 941
MroXI GAANNNNTTC 1 cut(s) 1130
MscI TGGCCA 2 cut(s) 189, 941
MseI TTAA 2 cut(s) 1706, 2069
MslI CAYNNNNRTG 4 cut(s) 686, 935, 1692, 1927
Msp20I TGGCCA 2 cut(s) 189, 941
MspA1I CMGCKG 3 cut(s) 596, 1211, 1811
MspCI CTTAAG 1 cut(s) 2068
MvaI CCWGG 3 cut(s) 505, 1293, 1315
MvnI CGCG 9 cut(s) 581, 596, 893, 1028, 1106, 1232, 1263, 1631, 1637
MwoI GCNNNNNNNGC 5 cut(s) 37, 81, 874, 1018, 1027
NarI GGCGCC 1 cut(s) 1350
NcoI CCATGG 1 cut(s) 1583
NdeII GATC 7 cut(s) 141, 254, 285, 1485, 1626, 1683, 1716
NlaIII CATG 2 cut(s) 74, 1587
NmeAIII GCCGAG 5 cut(s) 740, 771, 874, 997, 1564
NmuCI GTSAC 5 cut(s) 146, 295, 909, 1214, 1511
NruI TCGCGA 1 cut(s) 1232
NspV TTCGAA 1 cut(s) 1271
OliI CACNNNNGTG 1 cut(s) 1927
PceI AGGCCT 1 cut(s) 1981
PciSI GCTCTTC 1 cut(s) 1766
PcsI WCGNNNNNNNCGW 5 cut(s) 626, 638, 660, 1196, 1677
PdmI GAANNNNTTC 1 cut(s) 1130
PfeI GAWTC 5 cut(s) 177, 249, 347, 1067, 1179
Pfl23II CGTACG 1 cut(s) 1845
PinAI ACCGGT 1 cut(s) 1924
PkrI GCNGC 9 cut(s) 64, 520, 561, 625, 628, 740, 879, 1988, 1991
Ple19I CGATCG 1 cut(s) 144
PleI GAGTC 9 cut(s) 485, 559, 691, 703, 725, 769, 859, 1009, 1080
PluTI GGCGCC 1 cut(s) 1353
PmaCI CACGTG 1 cut(s) 973
PmlI CACGTG 1 cut(s) 973
PpsI GAGTC 9 cut(s) 485, 559, 691, 703, 725, 769, 859, 1009, 1080
Ppu21I YACGTR 6 cut(s) 475, 688, 973, 1034, 1252, 1681
PpuMI RGGWCCY 3 cut(s) 403, 1318, 1933
Psp124BI GAGCTC 1 cut(s) 672
Psp5II RGGWCCY 3 cut(s) 403, 1318, 1933
Psp6I CCWGG 3 cut(s) 503, 1291, 1313
PspCI CACGTG 1 cut(s) 973
PspEI GGTNACC 2 cut(s) 146, 1214
PspFI CCCAGC 2 cut(s) 412, 1937
PspGI CCWGG 3 cut(s) 503, 1291, 1313
PspLI CGTACG 1 cut(s) 1845
PspPPI RGGWCCY 3 cut(s) 403, 1318, 1933
PstI CTGCAG 1 cut(s) 1991
PstNI CAGNNNCTG 1 cut(s) 1570
PvuI CGATCG 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 1811
RruI TCGCGA 1 cut(s) 1232
RsaI GTAC 6 cut(s) 676, 1036, 1085, 1526, 1679, 1847
RsaNI GTAC 6 cut(s) 675, 1035, 1084, 1525, 1678, 1846
RseI CAYNNNNRTG 4 cut(s) 686, 935, 1692, 1927
Rsr2I CGGWCCG 2 cut(s) 1355, 1642
RsrII CGGWCCG 2 cut(s) 1355, 1642
SacI GAGCTC 1 cut(s) 672
SacII CCGCGG 1 cut(s) 597
SapI GCTCTTC 1 cut(s) 1766
SaqAI TTAA 2 cut(s) 1706, 2069
SatI GCNGC 9 cut(s) 63, 519, 560, 624, 627, 739, 878, 1987, 1990
Sau3AI GATC 7 cut(s) 141, 254, 285, 1485, 1626, 1683, 1716
SchI GAGTC 9 cut(s) 485, 559, 691, 703, 726, 770, 860, 1009, 1081
SduI GDGCHC 6 cut(s) 504, 672, 735, 1176, 1563, 1818
SfaNI GCATC 3 cut(s) 93, 369, 1840
SfcI CTRYAG 1 cut(s) 1987
SfoI GGCGCC 1 cut(s) 1351
Sfr303I CCGCGG 1 cut(s) 597
SfuI TTCGAA 1 cut(s) 1271
SgrAI CRCCGGYG 2 cut(s) 1346, 1924
SgrBI CCGCGG 1 cut(s) 597
SinI GGWCC 8 cut(s) 372, 391, 403, 1318, 1355, 1580, 1642, 1933
SmaI CCCGGG 1 cut(s) 1656
SmiMI CAYNNNNRTG 4 cut(s) 686, 935, 1692, 1927
SmlI CTYRAG 1 cut(s) 2068
SmoI CTYRAG 1 cut(s) 2068
Sse9I AATT 6 cut(s) 10, 15, 1155, 1361, 1868, 1903
SseBI AGGCCT 1 cut(s) 1981
SspDI GGCGCC 1 cut(s) 1349
SspMI CTAG 2 cut(s) 1983, 2025
SstI GAGCTC 1 cut(s) 672
StuI AGGCCT 1 cut(s) 1981
StyI CCWWGG 2 cut(s) 1583, 2060
TaaI ACNGT 4 cut(s) 1220, 1268, 1850, 1864
TaqII GACCGA 2 cut(s) 134, 548
TasI AATT 6 cut(s) 10, 15, 1155, 1361, 1868, 1903
TatI WGTACW 2 cut(s) 674, 1524
TauI GCSGC 6 cut(s) 65, 562, 626, 629, 741, 880
TfiI GAWTC 5 cut(s) 177, 249, 347, 1067, 1179
Tru1I TTAA 2 cut(s) 1706, 2069
Tru9I TTAA 2 cut(s) 1706, 2069
TscAI CASTG 4 cut(s) 803, 861, 2012, 2020
TseFI GTSAC 5 cut(s) 146, 295, 909, 1214, 1511
TseI GCWGC 3 cut(s) 518, 1986, 1989
Tsp45I GTSAC 5 cut(s) 146, 295, 909, 1214, 1511
TspDTI ATGAA 5 cut(s) 17, 449, 919, 1045, 1933
TspGWI ACGGA 8 cut(s) 184, 342, 1159, 1455, 1491, 1589, 1604, 1753
TspMI CCCGGG 1 cut(s) 1654
TspRI CASTG 4 cut(s) 803, 861, 2012, 2020
Vha464I CTTAAG 1 cut(s) 2068
VpaK11BI GGWCC 8 cut(s) 372, 391, 403, 1318, 1355, 1580, 1642, 1933
XapI RAATTY 2 cut(s) 1361, 1903
XmaI CCCGGG 1 cut(s) 1654
XmiI GTMKAC 2 cut(s) 471, 1287
XmnI GAANNNNTTC 1 cut(s) 1130
XspI CTAG 2 cut(s) 1983, 2025
ZraI GACGTC 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.