MD15G1369900.v1.1

Blue/Ultraviolet sensing protein C terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014599
Physical Location & Seq
Forward (+)
44958355 .. 44963487
5133 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1369900.v1.1.491

Sequence Viewer

Length: 2040 bp
ATGTCAGGTGGTGGTTGCAGTGTGGTTTGGTTCAGGAGAGATCTGAGGGTTGAAGATAACCCAGCTTTGGCAGCTGCAGTGAGAGCAGGAGGTGTGGTTTGTGTCTTCATCTGGGCTCCTGATGAAGAAGGCCCTTATTATCCTGGAAGGGTGTCAAGATGGTGGCTTAAACACAGCTTGGCTCATCTGGATTCCTCCCTAAAAAGTCTGGGTGCTTCTCTCATCACCAAAAGATCCACTGACAGTGTTTCTTCTCTCCTTGAAGTTGTTGTTTCCACTGGTGCCACTCAGCTTTTCTTCAACCACTTATATGATCCTATATCACTGGTTAGGGATCACAGGGCCAAGGAGGTTTTAACTGCTCAAGGCATAGCTGTGCGTTCCTTTAATGCGGATTTGCTCTACGAACCATGGGATGTTATTGATGTCCATGGTCGGCCGTTCACAACCTTCGATGCCTTTTGGGGAAGATGCCTTAGCATGCCATATGACCCGGATGCACCACTTCTTCCCCCTAAGAGAATTATTTCAGGTGATGCATCAAGGTCTCCTTCTGATACATTGGTTTTTGAAGATGAATCCGAGAAGGGAAGTAATGCACTTCTTGCTCGAGCATGGTCACCTGGGTGGAGTAATGCTGATAAGGCTCTGACTACATTTATAAATGGACCCTTACTTGATTACTCTAATAACCGCAGAAAGGCTGATGGCGCTACAACATCTTTACTTTCTCCCCATTTGCATTTTGGGGAGGTGAGTGTGAGAAAGGCATTTCATCTTGCTCGTATGAAGCAGGTTGTTTGGGCCAATGAAGGCAACAAGGCTGGTGAAGAGAGTGTAAACTTGTTTCTGAAGTCTATTGGTCTTCGGGAATATTCAAGATACATTAGTTTTAATCATCCTTACAGTCATGAAAGACCTCTTCTTGGGCACCTAAAGTTCTTCCCCTGGGTATTAGATCAAAAGTATTTCAAGGCATGGAGACAAGGTAGAACTGGCTATCCATTGGTGGATGCGGGCATGAGAGAGTTGTGGGCCACTGGTTGGCTACATGATCGAATACGAGTAGTAGTTTCTAGTTTCTTCGTAAAGGTTCTGCAACTTCCATGGAGATGGGGGATGAAGTATTTCTGGGATACACTCTTAGATGCTGATCTTGAAAGCGATGCTCTTGGTTGGCAGTATATATCTGGTACTTTACCTGATGGTCGTGAATTTGACCGCATAGATAATCCACAGTTTGAGGGTTACAAATTTGATCCAAATGGAGAATATGTGCGGAAGTGGCTTCCTGAACTTGCTAGGCTACCAACTGAATGGATACACCACCCGTGGAATGCACCAGAATCTGTTCTACAAGCAGCTGGAATTGAATTAGGATCGAATTACCCTCTACCTATTGTAGGCATAGATGCAGCGAAAACCCGGTTGCAAGAAGCTTTATCAGAGATGTGGCAGCACGAAGCTGCTTCAAGAGCCGCTGTTGAAAATGGGACTGAGGAAGGACTTGGAGACTCCTCAGAATCAGTACCAATTGCCTTTTCTCAAGACATACAAATGGAGGAAAATAATGAACCTGCAAGGAACAACCCTCCTGGCACTCGGAAGTATGAGGATCAAATGGTCCCAAGCATTACTACTTCGTTGGTTAGAGCTGAAGAGGAAGAAACTTCTTTGGAACTTCAAAATTTGACAGAAGAAACCAGAGCGGAAGTGCCTACAGACTTAATTGTGAATCAGGAACCAAGAAGAGACATATTAAACCAAGGGTTTTTTCAGACTATTCATAACAATGCTCTTCCACAATCCAATGCTGCAATAGGGCTACAACACGCTGTTGAAGATTCGACTGCAGAATCTTCCAGTAGCACTAGGCGAGAGAGGGATGGAGGTGTAGTTCCAGTTTGGTCTCCTTCAAGTTCTAGCTACTCGGAGCAGTTTGGGAGTGAAGACAATGGCATTGGAACAAGTTCGTACTTGCAGAGACATCCTCAGTCTCACCAAATAATGAATTGGAGGCGGCTATCTCAAACTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000302 GO:0000304 GO:0001101 GO:0001558 GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0009117 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009644 GO:0009645 GO:0009646 GO:0009719 GO:0009725 GO:0009785 GO:0009791 GO:0009812 GO:0009881 GO:0009882 GO:0009888 GO:0009914 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010073 GO:0010075 GO:0010112 GO:0010114 GO:0010117 GO:0010118 GO:0010218 GO:0010244 GO:0010310 GO:0010343 GO:0010359 GO:0010617 GO:0010817 GO:0012501 GO:0014070 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019222 GO:0019538 GO:0019637 GO:0019725 GO:0022603 GO:0022604 GO:0022898 GO:0023052 GO:0030003 GO:0030522 GO:0030554 GO:0031323 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035639 GO:0035690 GO:0036094 GO:0036211 GO:0036473 GO:0038023 GO:0040008 GO:0042221 GO:0042440 GO:0042493 GO:0042592 GO:0042726 GO:0042752 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043269 GO:0043270 GO:0043412 GO:0043900 GO:0043902 GO:0044070 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046283 GO:0046483 GO:0046777 GO:0048037 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050660 GO:0050662 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051093 GO:0051128 GO:0051179 GO:0051186 GO:0051193 GO:0051234 GO:0051239 GO:0051241 GO:0051480 GO:0051510 GO:0051606 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055086 GO:0055114 GO:0060089 GO:0060918 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070887 GO:0071000 GO:0071214 GO:0071452 GO:0071478 GO:0071482 GO:0071483 GO:0071496 GO:0071704 GO:0071949 GO:0072387 GO:0072503 GO:0072507 GO:0080134 GO:0097159 GO:0097367 GO:0097468 GO:0098771 GO:0099402 GO:0104004 GO:0140096 GO:1900424 GO:1900426 GO:1900618 GO:1901265 GO:1901332 GO:1901360 GO:1901363 GO:1901371 GO:1901529 GO:1901564 GO:1901672 GO:1901700 GO:1901701 GO:1902347 GO:1902446 GO:1902448 GO:1903793 GO:1903959 GO:1903961 GO:1905421 GO:2000023 GO:2000024 GO:2000026 GO:2000030 GO:2000069 GO:2000280 GO:2000377
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Cryptochrome_C DNA_photolyase FAD_binding_7

Protein Analysis

680

Amino Acids

76.39

Weight (kDa)

5.43

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 7 - 163 2.8e-40 DNA photolyase
FAD_binding_7 PF03441 283 - 482 4.1e-68 FAD binding domain of DNA photolyase
Cryptochrome_C PF12546 511 - 625 4.5e-38 Blue/Ultraviolet sensing protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014599)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08920
fragaria_vesca FvH4_5g37290 FvH4_5g37290
malus_domestica MD00G1201600.v1.1 MD15G1369900.v1.1
prunus_persica Prupe.1G517600_v2.0.a1
pyrus_communis pycom08g15710 pycom15g33100
rosa_chinensis RchiOBHm_Chr7g0238851
rosa_laevigata RLG00000000800
rosa_multiflora Rmu_sc0007101.1_g000007
rosa_roxburghii Rroxscaffold_3G00221540
rosa_rugosa Rorug07G0323900
rosa_samantha Rh7AG478000 Rh7CG495900 Rh7DG463200
rosa_wichuraiana Rw7G039930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 662
Acc36I ACCTGC 2 cut(s) 784, 1585
AccB1I GGYRCC 2 cut(s) 281, 930
AccB7I CCANNNNNTGG 1 cut(s) 1044
AccBSI CCGCTC 1 cut(s) 1709
AciI CCGC 8 cut(s) 392, 694, 1016, 1222, 1279, 1479, 1709, 2020
AclWI GGATC 6 cut(s) 228, 308, 342, 1253, 1387, 1623
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 3 cut(s) 1214, 1253, 1687
AcuI CTGAAG 2 cut(s) 872, 1677
AfaI GTAC 3 cut(s) 1195, 1530, 1976
AfiI CCNNNNNNNGG 5 cut(s) 67, 700, 926, 1044, 1403
AjnI CCWGG 4 cut(s) 142, 622, 947, 1594
AjuI GAANNNNNNNTTGG 4 cut(s) 1525, 1557, 1758, 1790
AleI CACNNNNGTG 1 cut(s) 625
AloI GAACNNNNNNTCC 4 cut(s) 985, 1017, 1881, 1913
Alw26I GTCTC 7 cut(s) 552, 976, 1506, 1746, 1914, 1978, 2001
AlwI GGATC 6 cut(s) 228, 308, 342, 1253, 1387, 1623
AlwNI CAGNNNCTG 1 cut(s) 1349
Ama87I CYCGRG 1 cut(s) 609
AoxI GGCC 5 cut(s) 130, 342, 437, 804, 1035
ApeKI GCWGC 7 cut(s) 71, 74, 1361, 1415, 1456, 1466, 1814
ApoI RAATTY 3 cut(s) 1214, 1253, 1687
Asp700I GAANNNNTTC 4 cut(s) 526, 1127, 1350, 1969
AspLEI GCGC 1 cut(s) 713
AspS9I GGNCC 6 cut(s) 131, 342, 668, 804, 1035, 1624
AsuC2I CCSGG 2 cut(s) 494, 1426
AsuHPI GGTGA 6 cut(s) 217, 545, 612, 766, 839, 1991
AvaI CYCGRG 1 cut(s) 609
AvaII GGWCC 2 cut(s) 668, 1624
BaeGI GKGCMC 1 cut(s) 933
BaeI ACNNNNGTAYC 4 cut(s) 549, 582, 874, 907
BanI GGYRCC 2 cut(s) 281, 930
BanII GRGCYC 1 cut(s) 118
BbsI GAAGAC 3 cut(s) 97, 857, 1956
BbvI GCAGC 7 cut(s) 61, 83, 1373, 1427, 1453, 1468, 1801
BccI CCATC 5 cut(s) 153, 701, 1107, 1199, 1880
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 4 cut(s) 144, 624, 949, 1596
BciVI GTATCC 2 cut(s) 1129, 1314
BcnI CCSGG 2 cut(s) 494, 1426
BcoDI GTCTC 7 cut(s) 552, 976, 1506, 1746, 1914, 1978, 2001
BfaI CTAG 4 cut(s) 1077, 1302, 1872, 1923
BfmI CTRYAG 3 cut(s) 75, 1719, 1851
BfoI RGCGCY 1 cut(s) 714
BfuAI ACCTGC 2 cut(s) 784, 1585
BfuI GTATCC 2 cut(s) 1129, 1314
BglII AGATCT 1 cut(s) 40
BisI GCNGC 9 cut(s) 72, 75, 1362, 1416, 1457, 1467, 1479, 1815, 2021
BlsI GCNGC 9 cut(s) 73, 76, 1363, 1417, 1458, 1468, 1480, 1816, 2022
Bme1390I CCNGG 6 cut(s) 144, 494, 624, 949, 1426, 1596
Bme18I GGWCC 2 cut(s) 668, 1624
BmeT110I CYCGRG 1 cut(s) 609
BmgT120I GGNCC 6 cut(s) 131, 342, 668, 804, 1035, 1624
BmiI GGNNCC 6 cut(s) 117, 283, 670, 932, 1626, 1743
BmrFI CCNGG 6 cut(s) 144, 494, 624, 949, 1426, 1596
BmsI GCATC 9 cut(s) 445, 461, 487, 526, 548, 1003, 1138, 1156, 1402
BpiI GAAGAC 3 cut(s) 97, 857, 1956
BplI GAGNNNNNCTC 2 cut(s) 1975, 2007
Bpu10I CCTNAGC 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 348, 1530
BpuMI CCSGG 2 cut(s) 494, 1426
BsaBI GATNNNNATC 1 cut(s) 1152
BsaI GGTCTC 2 cut(s) 552, 1914
BsaJI CCNNGG 9 cut(s) 345, 410, 430, 623, 947, 948, 1106, 1331, 1765
BsaXI ACNNNNNCTCC 8 cut(s) 81, 111, 973, 1003, 1260, 1290, 1881, 1911
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 700, 926, 1044, 1403
Bse1I ACTGG 7 cut(s) 283, 330, 1000, 1045, 1863, 1901, 2038
Bse8I GATNNNNATC 1 cut(s) 1152
BseBI CCWGG 4 cut(s) 144, 624, 949, 1596
BseDI CCNNGG 9 cut(s) 345, 410, 430, 623, 947, 948, 1106, 1331, 1765
BseGI GGATG 7 cut(s) 421, 502, 898, 1018, 1125, 1891, 1987
BseJI GATNNNNATC 1 cut(s) 1152
BseLI CCNNNNNNNGG 5 cut(s) 67, 700, 926, 1044, 1403
BseMII CTCAG 5 cut(s) 35, 302, 1488, 1533, 2006
BseNI ACTGG 7 cut(s) 283, 330, 1000, 1045, 1863, 1901, 2038
BseRI GAGGAG 1 cut(s) 1507
BseSI GKGCMC 1 cut(s) 933
BseX3I CGGCCG 1 cut(s) 437
BseXI GCAGC 7 cut(s) 61, 83, 1373, 1427, 1453, 1468, 1801
BseYI CCCAGC 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 440
BshFI GGCC 5 cut(s) 132, 344, 439, 806, 1037
BshNI GGYRCC 2 cut(s) 281, 930
BsiEI CGRYCG 1 cut(s) 440
BsiHKCI CYCGRG 1 cut(s) 609
BsiSI CCGG 2 cut(s) 494, 1426
BslFI GGGAC 2 cut(s) 1507, 1610
BslI CCNNNNNNNGG 5 cut(s) 67, 700, 926, 1044, 1403
BsmAI GTCTC 7 cut(s) 552, 976, 1506, 1746, 1914, 1978, 2001
BsmFI GGGAC 2 cut(s) 1507, 1610
BsmI GAATGC 1 cut(s) 1342
BsnI GGCC 5 cut(s) 132, 344, 439, 806, 1037
Bso31I GGTCTC 2 cut(s) 552, 1914
BsoBI CYCGRG 1 cut(s) 609
Bsp1286I GDGCHC 2 cut(s) 118, 933
Bsp19I CCATGG 3 cut(s) 410, 430, 1106
BspACI CCGC 8 cut(s) 392, 694, 1016, 1222, 1279, 1479, 1709, 2020
BspANI GGCC 5 cut(s) 132, 344, 439, 806, 1037
BspCNI CTCAG 5 cut(s) 36, 301, 1489, 1532, 2005
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 6 cut(s) 117, 283, 670, 932, 1626, 1743
BspMAI CTGCAG 2 cut(s) 79, 1855
BspMI ACCTGC 2 cut(s) 784, 1585
BspPI GGATC 6 cut(s) 228, 308, 342, 1253, 1387, 1623
BspQI GCTCTTC 1 cut(s) 1803
BspT107I GGYRCC 2 cut(s) 281, 930
BspTNI GGTCTC 2 cut(s) 552, 1914
BsrBI CCGCTC 1 cut(s) 1709
BsrI ACTGG 7 cut(s) 283, 330, 1000, 1045, 1863, 1901, 2038
BssECI CCNNGG 9 cut(s) 345, 410, 430, 623, 947, 948, 1106, 1331, 1765
BssT1I CCWWGG 5 cut(s) 345, 410, 430, 1106, 1765
Bst2UI CCWGG 4 cut(s) 144, 624, 949, 1596
Bst4CI ACNGT 3 cut(s) 245, 908, 1239
Bst6I CTCTTC 5 cut(s) 825, 927, 1653, 1744, 1803
BstAPI GCANNNNNTGC 1 cut(s) 605
BstC8I GCNNGC 2 cut(s) 482, 1018
BstDEI CTNAG 8 cut(s) 44, 288, 476, 516, 1144, 1497, 1519, 1992
BstDSI CCRYGG 4 cut(s) 410, 430, 1106, 1331
BstEII GGTNACC 1 cut(s) 618
BstENI CCTNNNNNAGG 1 cut(s) 1401
BstF5I GGATG 7 cut(s) 421, 502, 898, 1018, 1125, 1891, 1987
BstH2I RGCGCY 1 cut(s) 714
BstHHI GCGC 1 cut(s) 713
BstMAI GTCTC 7 cut(s) 552, 976, 1506, 1746, 1914, 1978, 2001
BstMCI CGRYCG 1 cut(s) 440
BstMWI GCNNNNNNNGC 7 cut(s) 71, 83, 605, 644, 710, 1285, 1475
BstNI CCWGG 4 cut(s) 144, 624, 949, 1596
BstNSI RCATGY 1 cut(s) 484
BstPI GGTNACC 1 cut(s) 618
BstSCI CCNGG 6 cut(s) 142, 492, 622, 947, 1424, 1594
BstSFI CTRYAG 3 cut(s) 75, 1719, 1851
BstSLI GKGCMC 1 cut(s) 933
BstV1I GCAGC 7 cut(s) 61, 83, 1373, 1427, 1453, 1468, 1801
BstV2I GAAGAC 3 cut(s) 97, 857, 1956
BstX2I RGATCY 2 cut(s) 40, 233
BstXI CCANNNNNNTGG 2 cut(s) 1113, 1317
BstYI RGATCY 2 cut(s) 40, 233
BstZI CGGCCG 1 cut(s) 437
BsuI GTATCC 2 cut(s) 1129, 1314
BsuRI GGCC 5 cut(s) 132, 344, 439, 806, 1037
BtgI CCRYGG 4 cut(s) 410, 430, 1106, 1331
BtgZI GCGATG 1 cut(s) 1179
BtsCI GGATG 7 cut(s) 421, 502, 898, 1018, 1125, 1891, 1987
BtsI GCAGTG 2 cut(s) 25, 84
BtsIMutI CAGTG 7 cut(s) 25, 84, 237, 250, 276, 323, 1038
BveI ACCTGC 2 cut(s) 784, 1585
Cac8I GCNNGC 2 cut(s) 482, 1018
CaiI CAGNNNCTG 1 cut(s) 1349
CciI TCATGA 1 cut(s) 910
CfoI GCGC 1 cut(s) 713
Cfr13I GGNCC 6 cut(s) 131, 342, 668, 804, 1035, 1624
Csp6I GTAC 3 cut(s) 1194, 1529, 1975
CviAII CATG 9 cut(s) 411, 431, 481, 615, 911, 978, 1021, 1052, 1107
CviQI GTAC 3 cut(s) 1194, 1529, 1975
DdeI CTNAG 8 cut(s) 44, 288, 476, 516, 1144, 1497, 1519, 1992
EaeI YGGCCR 1 cut(s) 437
EagI CGGCCG 1 cut(s) 437
Eam1104I CTCTTC 5 cut(s) 825, 927, 1653, 1744, 1803
EarI CTCTTC 5 cut(s) 825, 927, 1653, 1744, 1803
EclXI CGGCCG 1 cut(s) 437
Eco130I CCWWGG 5 cut(s) 345, 410, 430, 1106, 1765
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 2 cut(s) 552, 1914
Eco47I GGWCC 2 cut(s) 668, 1624
Eco52I CGGCCG 1 cut(s) 437
Eco57I CTGAAG 2 cut(s) 872, 1677
Eco88I CYCGRG 1 cut(s) 609
Eco91I GGTNACC 1 cut(s) 618
EcoNI CCTNNNNNAGG 1 cut(s) 1401
EcoO109I RGGNCCY 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 618
EcoRII CCWGG 4 cut(s) 142, 622, 947, 1594
EcoT14I CCWWGG 5 cut(s) 345, 410, 430, 1106, 1765
EcoT22I ATGCAT 1 cut(s) 541
EcoT38I GRGCYC 1 cut(s) 118
ErhI CCWWGG 5 cut(s) 345, 410, 430, 1106, 1765
FaeI CATG 9 cut(s) 414, 434, 484, 618, 914, 981, 1024, 1055, 1110
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FaqI GGGAC 2 cut(s) 1507, 1610
FatI CATG 9 cut(s) 410, 430, 480, 614, 910, 977, 1020, 1051, 1106
FauI CCCGC 1 cut(s) 1009
FauNDI CATATG 1 cut(s) 487
Fnu4HI GCNGC 9 cut(s) 72, 75, 1362, 1416, 1457, 1467, 1479, 1815, 2021
FokI GGATG 7 cut(s) 428, 509, 885, 1025, 1132, 1898, 1974
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 9 cut(s) 72, 75, 1362, 1416, 1457, 1467, 1479, 1815, 2021
FspBI CTAG 4 cut(s) 1077, 1302, 1872, 1923
GlaI GCGC 1 cut(s) 712
GluI GCNGC 9 cut(s) 72, 75, 1362, 1416, 1457, 1467, 1479, 1815, 2021
GsaI CCCAGC 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 714
HaeIII GGCC 5 cut(s) 132, 344, 439, 806, 1037
HapII CCGG 2 cut(s) 494, 1426
HhaI GCGC 1 cut(s) 713
Hin1II CATG 9 cut(s) 414, 434, 484, 618, 914, 981, 1024, 1055, 1110
Hin6I GCGC 1 cut(s) 711
HinP1I GCGC 1 cut(s) 711
HindIII AAGCTT 1 cut(s) 1437
HinfI GANTC 8 cut(s) 191, 578, 1346, 1514, 1523, 1735, 1844, 1856
HpaII CCGG 2 cut(s) 494, 1426
HphI GGTGA 6 cut(s) 217, 545, 612, 766, 839, 1991
Hpy166II GTNNAC 2 cut(s) 444, 841
Hpy8I GTNNAC 2 cut(s) 444, 841
HpyAV CCTTC 8 cut(s) 122, 141, 460, 561, 580, 806, 1496, 1923
HpyCH4III ACNGT 3 cut(s) 245, 908, 1239
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 83, 605, 644, 710, 1285, 1475
HpyF3I CTNAG 8 cut(s) 44, 288, 476, 516, 1144, 1497, 1519, 1992
Hsp92II CATG 9 cut(s) 414, 434, 484, 618, 914, 981, 1024, 1055, 1110
HspAI GCGC 1 cut(s) 711
LguI GCTCTTC 1 cut(s) 1803
LmnI GCTCC 2 cut(s) 121, 1933
Lsp1109I GCAGC 7 cut(s) 61, 83, 1373, 1427, 1453, 1468, 1801
LweI GCATC 9 cut(s) 445, 461, 487, 526, 548, 1003, 1138, 1156, 1402
MaeI CTAG 4 cut(s) 1077, 1302, 1872, 1923
MaeIII GTNAC 2 cut(s) 618, 1247
MbiI CCGCTC 1 cut(s) 1709
MfeI CAATTG 1 cut(s) 1533
MflI RGATCY 2 cut(s) 40, 233
MhlI GDGCHC 2 cut(s) 118, 933
MlyI GAGTC 1 cut(s) 1508
Mph1103I ATGCAT 1 cut(s) 541
MroXI GAANNNNTTC 4 cut(s) 526, 1127, 1350, 1969
MseI TTAA 6 cut(s) 168, 356, 387, 894, 1727, 1760
MslI CAYNNNNRTG 6 cut(s) 309, 374, 625, 1111, 1556, 1791
MspA1I CMGCKG 3 cut(s) 74, 1364, 1481
MspI CCGG 2 cut(s) 494, 1426
MspR9I CCNGG 6 cut(s) 144, 494, 624, 949, 1426, 1596
MunI CAATTG 1 cut(s) 1533
Mva1269I GAATGC 1 cut(s) 1342
MvaI CCWGG 4 cut(s) 144, 624, 949, 1596
MwoI GCNNNNNNNGC 7 cut(s) 71, 83, 605, 644, 710, 1285, 1475
NciI CCSGG 2 cut(s) 494, 1426
NcoI CCATGG 3 cut(s) 410, 430, 1106
NdeI CATATG 1 cut(s) 487
NlaIII CATG 9 cut(s) 414, 434, 484, 618, 914, 981, 1024, 1055, 1110
NlaIV GGNNCC 6 cut(s) 117, 283, 670, 932, 1626, 1743
NmuCI GTSAC 1 cut(s) 618
NsiI ATGCAT 1 cut(s) 541
NspI RCATGY 1 cut(s) 484
OliI CACNNNNGTG 1 cut(s) 625
PaeI GCATGC 1 cut(s) 484
PaeR7I CTCGAG 1 cut(s) 609
PagI TCATGA 1 cut(s) 910
PasI CCCWGGG 1 cut(s) 948
PciSI GCTCTTC 1 cut(s) 1803
PctI GAATGC 1 cut(s) 1342
PdmI GAANNNNTTC 4 cut(s) 526, 1127, 1350, 1969
PfeI GAWTC 7 cut(s) 191, 578, 1346, 1523, 1735, 1844, 1856
PflMI CCANNNNNTGG 1 cut(s) 1044
PfoI TCCNGGA 1 cut(s) 142
PkrI GCNGC 9 cut(s) 73, 76, 1363, 1417, 1458, 1468, 1480, 1816, 2022
PleI GAGTC 1 cut(s) 1508
PpsI GAGTC 1 cut(s) 1508
PsiI TTATAA 1 cut(s) 662
Psp6I CCWGG 4 cut(s) 142, 622, 947, 1594
PspEI GGTNACC 1 cut(s) 618
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 4 cut(s) 142, 622, 947, 1594
PspN4I GGNNCC 6 cut(s) 117, 283, 670, 932, 1626, 1743
PspPI GGNCC 6 cut(s) 131, 342, 668, 804, 1035, 1624
PspXI VCTCGAGB 1 cut(s) 609
PstI CTGCAG 2 cut(s) 79, 1855
PstNI CAGNNNCTG 1 cut(s) 1349
PsuI RGATCY 2 cut(s) 40, 233
PvuII CAGCTG 2 cut(s) 74, 1364
RsaI GTAC 3 cut(s) 1195, 1530, 1976
RsaNI GTAC 3 cut(s) 1194, 1529, 1975
RseI CAYNNNNRTG 6 cut(s) 309, 374, 625, 1111, 1556, 1791
SapI GCTCTTC 1 cut(s) 1803
SaqAI TTAA 6 cut(s) 168, 356, 387, 894, 1727, 1760
SatI GCNGC 9 cut(s) 72, 75, 1362, 1416, 1457, 1467, 1479, 1815, 2021
Sau96I GGNCC 6 cut(s) 131, 342, 668, 804, 1035, 1624
SchI GAGTC 1 cut(s) 1508
ScrFI CCNGG 6 cut(s) 144, 494, 624, 949, 1426, 1596
SduI GDGCHC 2 cut(s) 118, 933
SfaNI GCATC 9 cut(s) 445, 461, 487, 526, 548, 1003, 1138, 1156, 1402
SfcI CTRYAG 3 cut(s) 75, 1719, 1851
Sfr274I CTCGAG 1 cut(s) 609
SinI GGWCC 2 cut(s) 668, 1624
SlaI CTCGAG 1 cut(s) 609
SmiMI CAYNNNNRTG 6 cut(s) 309, 374, 625, 1111, 1556, 1791
SmlI CTYRAG 3 cut(s) 363, 609, 1545
SmoI CTYRAG 3 cut(s) 363, 609, 1545
SphI GCATGC 1 cut(s) 484
SsiI CCGC 8 cut(s) 392, 694, 1016, 1222, 1279, 1479, 1709, 2020
SspI AATATT 1 cut(s) 875
SspMI CTAG 4 cut(s) 1077, 1302, 1872, 1923
StyD4I CCNGG 6 cut(s) 142, 492, 622, 947, 1424, 1594
StyI CCWWGG 5 cut(s) 345, 410, 430, 1106, 1765
TaaI ACNGT 3 cut(s) 245, 908, 1239
TaqI TCGA 5 cut(s) 453, 610, 1057, 1382, 1847
TauI GCSGC 2 cut(s) 1481, 2023
TfiI GAWTC 7 cut(s) 191, 578, 1346, 1523, 1735, 1844, 1856
Tru1I TTAA 6 cut(s) 168, 356, 387, 894, 1727, 1760
Tru9I TTAA 6 cut(s) 168, 356, 387, 894, 1727, 1760
TscAI CASTG 7 cut(s) 25, 84, 244, 250, 283, 330, 1045
TseFI GTSAC 1 cut(s) 618
TseI GCWGC 7 cut(s) 71, 74, 1361, 1415, 1456, 1466, 1814
Tsp45I GTSAC 1 cut(s) 618
TspRI CASTG 7 cut(s) 25, 84, 244, 250, 283, 330, 1045
Van91I CCANNNNNTGG 1 cut(s) 1044
VpaK11BI GGWCC 2 cut(s) 668, 1624
XagI CCTNNNNNAGG 1 cut(s) 1401
XapI RAATTY 3 cut(s) 1214, 1253, 1687
XceI RCATGY 1 cut(s) 484
XcmI CCANNNNNNNNNTGG 1 cut(s) 743
XhoI CTCGAG 1 cut(s) 609
XmnI GAANNNNTTC 4 cut(s) 526, 1127, 1350, 1969
XspI CTAG 4 cut(s) 1077, 1302, 1872, 1923
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.