Rh7DG463200

Blue/Ultraviolet sensing protein C terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014599
Physical Location & Seq
Reverse (-)
65988024 .. 65991715
3692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG463200.1

Sequence Viewer

Length: 2019 bp
ATGTCAGGTGGTGGTTGCAGTGTCGTATGGTTCAGGAGAGATCTGAGGGTTGAGGACAATCCAGCTTTGGCAGCTGGAGTCAGAGCAGGAGGAGTTGTTGCTCTCTTTATTTGGGCACCTGAGGAAGAAGGGCCTTATTACCCAGGAAGGGTCTCAAGGTGGTGGCTCAAACACAGCTTGGCCCATCTTGATTCCTCTTTGAGAAGTTTGGGCACTCCTCTCATCACCAAGAGATCTACTGATAGTGTTTCTTCTCTTCTTGAGGTTTGTCTTGCAACTGGTGCCACTCAGCTCTTCTTCAACCACTTATATGATCCTATATCACTGGTTAGAGATCACAGGGCCAAGGAGGTTTTGTCTGCCAACGGCATAACTGTGCGTTCCTTTAATGCTGATTTGCTCTATGAACCGTGGGATGTTAATGATGTCCACGGTCGCCCATTCACAACCTTTGATGCTTTTTGGGAAAGATGCCTTAGCATGCCATATGATCCAGATGCACCACTTCTCCCCCCAAAGAGAATTGTTTCAGGTGATGCATCAAGGTGTCCTTCTGATACATTGATTTTCGAAGATGAATCAGAGAAGGGAAGCAATGCGTTACTTGCTCGAGCATGGTCACCTGGGTGGAGCACTGCTGATAAGGCTGTTACCACATTTATTAATGGTCCATTGATTGAGTATTCCAAAAACCGCAGAAAGGCTGATAGTAATACAACTTCTCTGCTTTCTCCCCATTTGCATTTTGGGGAGGTAAGTGTGAGGAAAGTATTTCATCTTATTCGGATCAAGCAGTTGCTTTGGGCCAATGAAGGTAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTTCTGAAATCTATTGGTCTTAGGGAGTATTCAAGATACATTAGTTTCAATCATCCTTACAGTCACGAAAGACCTCTTCTTGGGCACCTAAAATTCTTCCCCTGGGTTATAAATCAGAACTATTTCAAGGCATGGAGGCAAGGTCGAACTGGCTATCCGTTGGTGGATGCTGGCATGAGAGAGTTGTGGGCTACTGGCTGGCTGCATGATCGGATACGAGTTGTTGTTTCTAGTTTCTTTGTAAAGGTTCTGCAGCTTCCATGGAGGTGGGGAATGAAGTATTTCTGGGATACACTCTTAGATGCTGATCTTGAAAGTGATGCTCTTGGTTGGCAGTATATATCTGGCACTATCCCTGATGGGCGTGAGTTTGACCGCATAGATAATCCACAGTTTGAGGGTTACAAGTTTGATCCACATGGAGAATATGTGCGACGATGGCTTCCTGAACTTGCCAGGCTACCAACTGACTGGATACACCACCCATGGAATGCGCCAGAATCTGTACTCCAGGCAGCTGGAATTGAACTAGGATCAAATTATCCTCTTCCTATTGTAGGAATAGATGCAGCAAAAACCAGGTTGCAAGAAGCATTAACAGAAATGTGGCAGCATGAAAGAGCCGCTGTTGAGAATGGAACTGAAGAAGGCCTCGGAGAGTCTTCTGAATCAACCCCCATTGCCTTTCCTCAAGACATACAAATGGAGGATAGTCATGAACAGGTGAGGAATAACCCTCCCCCTCCAACTCGACGCTATGAGGATCAGATGGTCCCTAGTATAACTACTTCTCTTGTGCGAGTTGAAGAGGAAGAAAGTTCTGTAGATCTTCCGAGCAGAGCCGAAGTGCCTACAAATGTTACTGGGGATCAAGAATCAAGGAGAGACACATTAAACCAAGAGGGTTTTCAGCCTAATCATAACAACACTCCACCACAACCCAATACTGCCCTAACCCTGCAATTTGTTGTTGAAGATTCCAGTGCAGAATCTTCCAGCAGTACTAGGAGAGAGAGGGATGGAGGTGTAGTTCCAGTTTGGTCTCCTTCAACTTCTAGCTACTCGGAGCAGTTTGTGAGTGATGAGAATGGCATTGCAACAAGTTCTTACTTGCAAAGACATCCTCAGTCTCACCAAATAATGAATTGGAGGCGGCTATCACAAACTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000302 GO:0000304 GO:0001101 GO:0001558 GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0009117 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009644 GO:0009645 GO:0009646 GO:0009719 GO:0009725 GO:0009785 GO:0009791 GO:0009812 GO:0009881 GO:0009882 GO:0009888 GO:0009914 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010073 GO:0010075 GO:0010112 GO:0010114 GO:0010117 GO:0010118 GO:0010218 GO:0010244 GO:0010310 GO:0010343 GO:0010359 GO:0010617 GO:0010817 GO:0012501 GO:0014070 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019222 GO:0019538 GO:0019637 GO:0019725 GO:0022603 GO:0022604 GO:0022898 GO:0023052 GO:0030003 GO:0030522 GO:0030554 GO:0031323 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035639 GO:0035690 GO:0036094 GO:0036211 GO:0036473 GO:0038023 GO:0040008 GO:0042221 GO:0042440 GO:0042493 GO:0042592 GO:0042726 GO:0042752 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043269 GO:0043270 GO:0043412 GO:0043900 GO:0043902 GO:0044070 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046283 GO:0046483 GO:0046777 GO:0048037 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050660 GO:0050662 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051093 GO:0051128 GO:0051179 GO:0051186 GO:0051193 GO:0051234 GO:0051239 GO:0051241 GO:0051480 GO:0051510 GO:0051606 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055086 GO:0055114 GO:0060089 GO:0060918 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070887 GO:0071000 GO:0071214 GO:0071452 GO:0071478 GO:0071482 GO:0071483 GO:0071496 GO:0071704 GO:0071949 GO:0072387 GO:0072503 GO:0072507 GO:0080134 GO:0097159 GO:0097367 GO:0097468 GO:0098771 GO:0099402 GO:0104004 GO:0140096 GO:1900424 GO:1900426 GO:1900618 GO:1901265 GO:1901332 GO:1901360 GO:1901363 GO:1901371 GO:1901529 GO:1901564 GO:1901672 GO:1901700 GO:1901701 GO:1902347 GO:1902446 GO:1902448 GO:1903793 GO:1903959 GO:1903961 GO:1905421 GO:2000023 GO:2000024 GO:2000026 GO:2000030 GO:2000069 GO:2000280 GO:2000377
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Cryptochrome_C DNA_photolyase FAD_binding_7

Protein Analysis

672

Amino Acids

76.16

Weight (kDa)

5.52

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 7 - 163 1.4e-40 DNA photolyase
FAD_binding_7 PF03441 283 - 481 1.7e-67 FAD binding domain of DNA photolyase
Cryptochrome_C PF12546 508 - 618 5.3e-33 Blue/Ultraviolet sensing protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014599)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08920
fragaria_vesca FvH4_5g37290 FvH4_5g37290
malus_domestica MD00G1201600.v1.1 MD15G1369900.v1.1
prunus_persica Prupe.1G517600_v2.0.a1
pyrus_communis pycom08g15710 pycom15g33100
rosa_chinensis RchiOBHm_Chr7g0238851
rosa_laevigata RLG00000000800
rosa_multiflora Rmu_sc0007101.1_g000007
rosa_roxburghii Rroxscaffold_3G00221540
rosa_rugosa Rorug07G0323900
rosa_samantha Rh7AG478000 Rh7CG495900 Rh7DG463200
rosa_wichuraiana Rw7G039930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
AccB1I GGYRCC 3 cut(s) 115, 281, 930
AciI CCGC 4 cut(s) 694, 1222, 1470, 1999
AclWI GGATC 7 cut(s) 308, 485, 794, 1253, 1387, 1617, 1722
AcsI RAATTY 1 cut(s) 938
AcuI CTGAAG 1 cut(s) 1509
AfaI GTAC 2 cut(s) 1353, 1849
AfiI CCNNNNNNNGG 4 cut(s) 148, 700, 926, 1403
AgsI TTSAA 9 cut(s) 301, 879, 895, 973, 1160, 1373, 1652, 1820, 1896
AjnI CCWGG 6 cut(s) 142, 622, 947, 1301, 1356, 1424
AjuI GAANNNNNNNTTGG 2 cut(s) 1737, 1769
AleI CACNNNNGTG 1 cut(s) 625
AloI GAACNNNNNNTCC 4 cut(s) 985, 1017, 1860, 1892
AluBI AGCT 7 cut(s) 65, 74, 177, 292, 1102, 1364, 1905
AluI AGCT 7 cut(s) 65, 74, 177, 292, 1102, 1364, 1905
Alw21I GWGCWC 1 cut(s) 635
Alw26I GTCTC 4 cut(s) 157, 1725, 1893, 1980
AlwI GGATC 7 cut(s) 308, 485, 794, 1253, 1387, 1617, 1722
AlwNI CAGNNNCTG 1 cut(s) 1349
Ama87I CYCGRG 1 cut(s) 609
AoxI GGCC 5 cut(s) 131, 180, 342, 804, 1495
ApeKI GCWGC 6 cut(s) 71, 1048, 1099, 1361, 1415, 1456
ApoI RAATTY 1 cut(s) 938
AseI ATTAAT 1 cut(s) 663
Asp700I GAANNNNTTC 3 cut(s) 526, 968, 1127
AspLEI GCGC 1 cut(s) 1342
AspS9I GGNCC 6 cut(s) 131, 181, 342, 668, 804, 1618
AsuHPI GGTGA 6 cut(s) 217, 545, 612, 839, 1582, 1970
AsuII TTCGAA 1 cut(s) 570
AvaI CYCGRG 1 cut(s) 609
AvaII GGWCC 2 cut(s) 668, 1618
AxyI CCTNAGG 1 cut(s) 120
BaeGI GKGCMC 3 cut(s) 118, 215, 933
BaeI ACNNNNGTAYC 2 cut(s) 874, 907
BanI GGYRCC 3 cut(s) 115, 281, 930
BarI GAAGNNNNNNTAC 4 cut(s) 703, 735, 1618, 1650
BbsI GAAGAC 1 cut(s) 1500
Bbv12I GWGCWC 1 cut(s) 635
BbvI GCAGC 6 cut(s) 83, 1035, 1111, 1373, 1427, 1468
BccI CCATC 5 cut(s) 192, 1199, 1278, 1609, 1859
BceAI ACGGC 1 cut(s) 382
BciT130I CCWGG 6 cut(s) 144, 624, 949, 1303, 1358, 1426
BciVI GTATCC 3 cut(s) 1053, 1129, 1314
BcoDI GTCTC 4 cut(s) 157, 1725, 1893, 1980
BfaI CTAG 5 cut(s) 1077, 1376, 1623, 1851, 1902
BfmI CTRYAG 2 cut(s) 1097, 1668
BfuI GTATCC 3 cut(s) 1053, 1129, 1314
BglII AGATCT 3 cut(s) 40, 233, 1672
BisI GCNGC 8 cut(s) 72, 1049, 1100, 1362, 1416, 1457, 1470, 2000
BlsI GCNGC 8 cut(s) 73, 1050, 1101, 1363, 1417, 1458, 1471, 2001
BmcAI AGTACT 1 cut(s) 1849
Bme1390I CCNGG 6 cut(s) 144, 624, 949, 1303, 1358, 1426
Bme18I GGWCC 2 cut(s) 668, 1618
BmeT110I CYCGRG 1 cut(s) 609
BmgT120I GGNCC 6 cut(s) 131, 181, 342, 668, 804, 1618
BmiI GGNNCC 4 cut(s) 117, 283, 932, 1620
BmrFI CCNGG 6 cut(s) 144, 624, 949, 1303, 1358, 1426
BmrI ACTGGG 1 cut(s) 1719
BmsI GCATC 9 cut(s) 445, 461, 487, 526, 548, 1003, 1138, 1156, 1402
BmuI ACTGGG 1 cut(s) 1719
BpiI GAAGAC 1 cut(s) 1500
BpmI CTGGAG 2 cut(s) 96, 1340
Bpu10I CCTNAGC 1 cut(s) 476
Bpu14I TTCGAA 1 cut(s) 570
BpuEI CTTGAG 3 cut(s) 139, 281, 1521
BsaBI GATNNNNATC 1 cut(s) 1152
BsaI GGTCTC 2 cut(s) 157, 1893
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 700, 926, 1403
Bse1I ACTGG 9 cut(s) 283, 330, 1000, 1045, 1322, 1714, 1827, 1880, 2017
Bse21I CCTNAGG 1 cut(s) 120
Bse3DI GCAATG 3 cut(s) 601, 1524, 1938
Bse8I GATNNNNATC 1 cut(s) 1152
BseBI CCWGG 6 cut(s) 144, 624, 949, 1303, 1358, 1426
BseGI GGATG 5 cut(s) 421, 898, 1018, 1870, 1966
BseJI GATNNNNATC 1 cut(s) 1152
BseLI CCNNNNNNNGG 4 cut(s) 148, 700, 926, 1403
BseMI GCAATG 3 cut(s) 601, 1524, 1938
BseMII CTCAG 4 cut(s) 35, 111, 302, 1985
BseNI ACTGG 9 cut(s) 283, 330, 1000, 1045, 1322, 1714, 1827, 1880, 2017
BseRI GAGGAG 2 cut(s) 105, 207
BseSI GKGCMC 3 cut(s) 118, 215, 933
BseXI GCAGC 6 cut(s) 83, 1035, 1111, 1373, 1427, 1468
BsgI GTGCAG 1 cut(s) 1851
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 5 cut(s) 133, 182, 344, 806, 1497
BshNI GGYRCC 3 cut(s) 115, 281, 930
BsiEI CGRYCG 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 635
BsiHKCI CYCGRG 1 cut(s) 609
BslFI GGGAC 1 cut(s) 1604
BslI CCNNNNNNNGG 4 cut(s) 148, 700, 926, 1403
BsmAI GTCTC 4 cut(s) 157, 1725, 1893, 1980
BsmFI GGGAC 1 cut(s) 1604
BsmI GAATGC 1 cut(s) 1342
BsnI GGCC 5 cut(s) 133, 182, 344, 806, 1497
Bso31I GGTCTC 2 cut(s) 157, 1893
BsoBI CYCGRG 1 cut(s) 609
Bsp119I TTCGAA 1 cut(s) 570
Bsp1286I GDGCHC 4 cut(s) 118, 215, 635, 933
Bsp19I CCATGG 2 cut(s) 1106, 1331
BspACI CCGC 4 cut(s) 694, 1222, 1470, 1999
BspANI GGCC 5 cut(s) 133, 182, 344, 806, 1497
BspCNI CTCAG 4 cut(s) 36, 112, 301, 1984
BspHI TCATGA 1 cut(s) 1561
BspLI GGNNCC 4 cut(s) 117, 283, 932, 1620
BspMAI CTGCAG 1 cut(s) 1101
BspPI GGATC 7 cut(s) 308, 485, 794, 1253, 1387, 1617, 1722
BspQI GCTCTTC 1 cut(s) 299
BspT104I TTCGAA 1 cut(s) 570
BspT107I GGYRCC 3 cut(s) 115, 281, 930
BspTNI GGTCTC 2 cut(s) 157, 1893
BsrDI GCAATG 3 cut(s) 601, 1524, 1938
BsrI ACTGG 9 cut(s) 283, 330, 1000, 1045, 1322, 1714, 1827, 1880, 2017
BssT1I CCWWGG 3 cut(s) 345, 1106, 1331
Bst2UI CCWGG 6 cut(s) 144, 624, 949, 1303, 1358, 1426
Bst4CI ACNGT 5 cut(s) 376, 411, 434, 908, 1239
Bst6I CTCTTC 6 cut(s) 261, 299, 825, 927, 1398, 1647
BstAPI GCANNNNNTGC 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 570
BstC8I GCNNGC 3 cut(s) 482, 1018, 1046
BstDEI CTNAG 7 cut(s) 44, 120, 288, 476, 866, 1144, 1971
BstDSI CCRYGG 4 cut(s) 410, 430, 1106, 1331
BstEII GGTNACC 1 cut(s) 618
BstENI CCTNNNNNAGG 1 cut(s) 1401
BstF5I GGATG 5 cut(s) 421, 898, 1018, 1870, 1966
BstHHI GCGC 1 cut(s) 1342
BstMAI GTCTC 4 cut(s) 157, 1725, 1893, 1980
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 5 cut(s) 71, 281, 605, 644, 1285
BstNI CCWGG 6 cut(s) 144, 624, 949, 1303, 1358, 1426
BstNSI RCATGY 1 cut(s) 484
BstPI GGTNACC 1 cut(s) 618
BstSCI CCNGG 6 cut(s) 142, 622, 947, 1301, 1356, 1424
BstSFI CTRYAG 2 cut(s) 1097, 1668
BstSLI GKGCMC 3 cut(s) 118, 215, 933
BstV1I GCAGC 6 cut(s) 83, 1035, 1111, 1373, 1427, 1468
BstV2I GAAGAC 1 cut(s) 1500
BstX2I RGATCY 3 cut(s) 40, 233, 1672
BstXI CCANNNNNNTGG 3 cut(s) 1113, 1317, 1364
BstYI RGATCY 3 cut(s) 40, 233, 1672
Bsu36I CCTNAGG 1 cut(s) 120
BsuI GTATCC 3 cut(s) 1053, 1129, 1314
BsuRI GGCC 5 cut(s) 133, 182, 344, 806, 1497
BtgI CCRYGG 4 cut(s) 410, 430, 1106, 1331
BtsCI GGATG 5 cut(s) 421, 898, 1018, 1870, 1966
BtsI GCAGTG 2 cut(s) 25, 633
BtsIMutI CAGTG 4 cut(s) 25, 323, 633, 1834
Cac8I GCNNGC 3 cut(s) 482, 1018, 1046
CaiI CAGNNNCTG 1 cut(s) 1349
CciI TCATGA 1 cut(s) 1561
CfoI GCGC 1 cut(s) 1342
Cfr13I GGNCC 6 cut(s) 131, 181, 342, 668, 804, 1618
CseI GACGC 1 cut(s) 1608
CsiI ACCWGGT 1 cut(s) 1424
Csp6I GTAC 2 cut(s) 1352, 1848
CviQI GTAC 2 cut(s) 1352, 1848
DdeI CTNAG 7 cut(s) 44, 120, 288, 476, 866, 1144, 1971
Eam1104I CTCTTC 6 cut(s) 261, 299, 825, 927, 1398, 1647
EarI CTCTTC 6 cut(s) 261, 299, 825, 927, 1398, 1647
Eco130I CCWWGG 3 cut(s) 345, 1106, 1331
Eco147I AGGCCT 1 cut(s) 1497
Eco31I GGTCTC 2 cut(s) 157, 1893
Eco47I GGWCC 2 cut(s) 668, 1618
Eco57I CTGAAG 1 cut(s) 1509
Eco81I CCTNAGG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 609
Eco91I GGTNACC 1 cut(s) 618
EcoNI CCTNNNNNAGG 1 cut(s) 1401
EcoO109I RGGNCCY 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 618
EcoRII CCWGG 6 cut(s) 142, 622, 947, 1301, 1356, 1424
EcoT14I CCWWGG 3 cut(s) 345, 1106, 1331
EcoT22I ATGCAT 1 cut(s) 541
ErhI CCWWGG 3 cut(s) 345, 1106, 1331
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FaqI GGGAC 1 cut(s) 1604
FauNDI CATATG 1 cut(s) 487
Fnu4HI GCNGC 8 cut(s) 72, 1049, 1100, 1362, 1416, 1457, 1470, 2000
FokI GGATG 5 cut(s) 428, 885, 1025, 1877, 1953
Fsp4HI GCNGC 8 cut(s) 72, 1049, 1100, 1362, 1416, 1457, 1470, 2000
FspBI CTAG 5 cut(s) 1077, 1376, 1623, 1851, 1902
GlaI GCGC 1 cut(s) 1341
GluI GCNGC 8 cut(s) 72, 1049, 1100, 1362, 1416, 1457, 1470, 2000
GsuI CTGGAG 2 cut(s) 96, 1340
HaeIII GGCC 5 cut(s) 133, 182, 344, 806, 1497
HgaI GACGC 1 cut(s) 1608
HhaI GCGC 1 cut(s) 1342
Hin6I GCGC 1 cut(s) 1340
HinP1I GCGC 1 cut(s) 1340
HinfI GANTC 9 cut(s) 78, 191, 578, 1346, 1505, 1514, 1721, 1823, 1835
HphI GGTGA 6 cut(s) 217, 545, 612, 839, 1582, 1970
Hpy166II GTNNAC 2 cut(s) 430, 841
Hpy8I GTNNAC 2 cut(s) 430, 841
Hpy99I CGWCG 2 cut(s) 1284, 1602
HpyAV CCTTC 7 cut(s) 122, 141, 561, 580, 806, 1487, 1902
HpyCH4III ACNGT 5 cut(s) 376, 411, 434, 908, 1239
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 281, 605, 644, 1285
HpyF3I CTNAG 7 cut(s) 44, 120, 288, 476, 866, 1144, 1971
HspAI GCGC 1 cut(s) 1340
LguI GCTCTTC 1 cut(s) 299
LmnI GCTCC 2 cut(s) 630, 1912
Lsp1109I GCAGC 6 cut(s) 83, 1035, 1111, 1373, 1427, 1468
LweI GCATC 9 cut(s) 445, 461, 487, 526, 548, 1003, 1138, 1156, 1402
MabI ACCWGGT 1 cut(s) 1424
MaeI CTAG 5 cut(s) 1077, 1376, 1623, 1851, 1902
MaeIII GTNAC 7 cut(s) 600, 618, 649, 815, 908, 1247, 1705
MflI RGATCY 3 cut(s) 40, 233, 1672
MhlI GDGCHC 4 cut(s) 118, 215, 635, 933
MluCI AATT 6 cut(s) 522, 938, 1368, 1384, 1808, 1990
MlyI GAGTC 2 cut(s) 87, 1514
MmeI TCCRAC 1 cut(s) 1616
Mph1103I ATGCAT 1 cut(s) 541
MroXI GAANNNNTTC 3 cut(s) 526, 968, 1127
MseI TTAA 5 cut(s) 387, 420, 663, 1442, 1739
MslI CAYNNNNRTG 6 cut(s) 309, 374, 544, 625, 1111, 1547
MspA1I CMGCKG 3 cut(s) 74, 1364, 1472
MspR9I CCNGG 6 cut(s) 144, 624, 949, 1303, 1358, 1426
Mva1269I GAATGC 1 cut(s) 1342
MvaI CCWGG 6 cut(s) 144, 624, 949, 1303, 1358, 1426
MwoI GCNNNNNNNGC 5 cut(s) 71, 281, 605, 644, 1285
NcoI CCATGG 2 cut(s) 1106, 1331
NdeI CATATG 1 cut(s) 487
NlaIV GGNNCC 4 cut(s) 117, 283, 932, 1620
NmuCI GTSAC 2 cut(s) 618, 908
NsiI ATGCAT 1 cut(s) 541
NspI RCATGY 1 cut(s) 484
NspV TTCGAA 1 cut(s) 570
OliI CACNNNNGTG 1 cut(s) 625
PaeI GCATGC 1 cut(s) 484
PaeR7I CTCGAG 1 cut(s) 609
PagI TCATGA 1 cut(s) 1561
PasI CCCWGGG 1 cut(s) 948
PceI AGGCCT 1 cut(s) 1497
PciSI GCTCTTC 1 cut(s) 299
PctI GAATGC 1 cut(s) 1342
PdmI GAANNNNTTC 3 cut(s) 526, 968, 1127
PfeI GAWTC 7 cut(s) 191, 578, 1346, 1514, 1721, 1823, 1835
PkrI GCNGC 8 cut(s) 73, 1050, 1101, 1363, 1417, 1458, 1471, 2001
PleI GAGTC 2 cut(s) 86, 1513
PpsI GAGTC 2 cut(s) 86, 1513
PshBI ATTAAT 1 cut(s) 663
PsiI TTATAA 1 cut(s) 956
Psp6I CCWGG 6 cut(s) 142, 622, 947, 1301, 1356, 1424
PspEI GGTNACC 1 cut(s) 618
PspGI CCWGG 6 cut(s) 142, 622, 947, 1301, 1356, 1424
PspN4I GGNNCC 4 cut(s) 117, 283, 932, 1620
PspPI GGNCC 6 cut(s) 131, 181, 342, 668, 804, 1618
PspXI VCTCGAGB 1 cut(s) 609
PstI CTGCAG 1 cut(s) 1101
PstNI CAGNNNCTG 1 cut(s) 1349
PsuI RGATCY 3 cut(s) 40, 233, 1672
PvuII CAGCTG 2 cut(s) 74, 1364
RsaI GTAC 2 cut(s) 1353, 1849
RsaNI GTAC 2 cut(s) 1352, 1848
RseI CAYNNNNRTG 6 cut(s) 309, 374, 544, 625, 1111, 1547
SapI GCTCTTC 1 cut(s) 299
SaqAI TTAA 5 cut(s) 387, 420, 663, 1442, 1739
SatI GCNGC 8 cut(s) 72, 1049, 1100, 1362, 1416, 1457, 1470, 2000
Sau96I GGNCC 6 cut(s) 131, 181, 342, 668, 804, 1618
ScaI AGTACT 1 cut(s) 1849
SchI GAGTC 2 cut(s) 87, 1514
ScrFI CCNGG 6 cut(s) 144, 624, 949, 1303, 1358, 1426
SduI GDGCHC 4 cut(s) 118, 215, 635, 933
SexAI ACCWGGT 1 cut(s) 1424
SfaNI GCATC 9 cut(s) 445, 461, 487, 526, 548, 1003, 1138, 1156, 1402
SfcI CTRYAG 2 cut(s) 1097, 1668
Sfr274I CTCGAG 1 cut(s) 609
SfuI TTCGAA 1 cut(s) 570
SinI GGWCC 2 cut(s) 668, 1618
SlaI CTCGAG 1 cut(s) 609
SmiMI CAYNNNNRTG 6 cut(s) 309, 374, 544, 625, 1111, 1547
SmlI CTYRAG 4 cut(s) 154, 260, 609, 1536
SmoI CTYRAG 4 cut(s) 154, 260, 609, 1536
SphI GCATGC 1 cut(s) 484
Sse9I AATT 6 cut(s) 522, 938, 1368, 1384, 1808, 1990
SseBI AGGCCT 1 cut(s) 1497
SsiI CCGC 4 cut(s) 694, 1222, 1470, 1999
SspMI CTAG 5 cut(s) 1077, 1376, 1623, 1851, 1902
StuI AGGCCT 1 cut(s) 1497
StyD4I CCNGG 6 cut(s) 142, 622, 947, 1301, 1356, 1424
StyI CCWWGG 3 cut(s) 345, 1106, 1331
TaaI ACNGT 5 cut(s) 376, 411, 434, 908, 1239
TaqI TCGA 4 cut(s) 570, 610, 991, 1597
TasI AATT 6 cut(s) 522, 938, 1368, 1384, 1808, 1990
TatI WGTACW 2 cut(s) 1351, 1847
TauI GCSGC 2 cut(s) 1472, 2002
TfiI GAWTC 7 cut(s) 191, 578, 1346, 1514, 1721, 1823, 1835
Tru1I TTAA 5 cut(s) 387, 420, 663, 1442, 1739
Tru9I TTAA 5 cut(s) 387, 420, 663, 1442, 1739
TscAI CASTG 4 cut(s) 25, 330, 640, 1834
TseFI GTSAC 2 cut(s) 618, 908
TseI GCWGC 6 cut(s) 71, 1048, 1099, 1361, 1415, 1456
Tsp45I GTSAC 2 cut(s) 618, 908
TspDTI ATGAA 8 cut(s) 420, 591, 764, 825, 1136, 1476, 1578, 2003
TspGWI ACGGA 1 cut(s) 993
TspRI CASTG 4 cut(s) 25, 330, 640, 1834
VpaK11BI GGWCC 2 cut(s) 668, 1618
VspI ATTAAT 1 cut(s) 663
XagI CCTNNNNNAGG 1 cut(s) 1401
XapI RAATTY 1 cut(s) 938
XceI RCATGY 1 cut(s) 484
XcmI CCANNNNNNNNNTGG 1 cut(s) 743
XhoI CTCGAG 1 cut(s) 609
XmnI GAANNNNTTC 3 cut(s) 526, 968, 1127
XspI CTAG 5 cut(s) 1077, 1376, 1623, 1851, 1902
ZrmI AGTACT 1 cut(s) 1849
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.