Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0019759

Physical Location & Seq

Genomic Coordinates Forward (+)

51311984 .. 51312404

Gene Structure 421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1413600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGAATGCAGGGATCTTTCAAATAACAATCTGACAGGGGATATTCCAGTCAATGGATCTTTTTCACTTTTTACTCCCGTCAGTTTTTCCAATAATCCTCGTCTGAATCCACCTCCTCCCGTTTCTCCAACCCCACCAAGTTCTCCAGGTTTTTACAACTTATACTGTTCTTGTGATATTAACTCAAATTTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

66

Amino Acids

7.06

Weight (kDa)

4.23

Isoelectric Point (pI)

63.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019759)

Species	Orthologous Gene IDs
malus_domestica	MD15G1413600.v1.1
rosa_laevigata	RLG00000008560
rosa_multiflora	Rmu_sc0004200.1_g000022
rosa_samantha	Rh1CG014000 Rh2DG462300 Rh7AG369600 Rh7CG388100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	53
AclWI	GGATC	2 cut(s)	21, 64
AcsI	RAATTY	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	145
AlwI	GGATC	2 cut(s)	21, 64
ApoI	RAATTY	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	13, 56
BspPI	GGATC	2 cut(s)	21, 64
BsrI	ACTGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	13, 56
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	167
BstKTI	GATC	2 cut(s)	16, 59
BstMBI	GATC	2 cut(s)	13, 56
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstX2I	RGATCY	2 cut(s)	13, 56
BstYI	RGATCY	2 cut(s)	13, 56
DpnI	GATC	2 cut(s)	15, 58
DpnII	GATC	2 cut(s)	13, 56
EcoRII	CCWGG	1 cut(s)	145
FaiI	YATR	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	129
HinfI	GANTC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	33, 105
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	13, 56
LpnPI	CCDG	4 cut(s)	21, 60, 132, 159
MalI	GATC	2 cut(s)	15, 58
MboI	GATC	2 cut(s)	13, 56
MflI	RGATCY	2 cut(s)	13, 56
MluCI	AATT	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	3 cut(s)	108, 123, 126
MseI	TTAA	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	13, 56
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PsuI	RGATCY	2 cut(s)	13, 56
SaqAI	TTAA	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	13, 56
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	2 cut(s)	115, 151
Sse9I	AATT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	167
TasI	AATT	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	53
XapI	RAATTY	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.