RLG00000008560

Inter-alpha-trypsin inhibitor heavy

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019759
Physical Location & Seq
Forward (+)
32101207 .. 32103803
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008560

Sequence Viewer

Length: 450 bp
ATGACGCTGTACGACGTCCCATCGCCATCACCGATAACCGCAAGAGGTTACTTCAGCACAAGGAGCTCAAATCCGGAGTCCGCGGAACTCGCAAGCAATTCGAAAGTCCTGAGAGCTTCATCTGCGCCTGAAGAGTTGAGATCTTATCATCGACAATTCAGCTCTCGTAGGATCGAAAGCAATATACAAATTCAAAGGCACTGTCTTGCAAGTGAGGATGCGATATCCCCTCGCATATCCACTTTTGGAATAGGTTTGTTCTGCAACCATTATTTCCTACGGATGCTAGCAATGATTGGAAGGGGCCAATATGATGCTGCCTATGATATAGGGCCACTAGTGTTTGAGTTTTCTAAAGAACTAGACCAAGAAGTTGTTTGTGGGGAACTTTATAGTAATAACATAAATGGTAATATTGCAGACGAGCTTGGCAGTTTGAACAACCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA_3

Protein Analysis

150

Amino Acids

16.62

Weight (kDa)

5.34

Isoelectric Point (pI)

71.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019759)

Species Orthologous Gene IDs
malus_domestica MD15G1413600.v1.1
rosa_laevigata RLG00000008560
rosa_multiflora Rmu_sc0004200.1_g000022
rosa_samantha Rh1CG014000 Rh2DG462300 Rh7AG369600 Rh7CG388100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 18
AccII CGCG 1 cut(s) 83
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 3 cut(s) 39, 81, 83
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 2 cut(s) 37, 150
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 2 cut(s) 194, 439
AhlI ACTAGT 1 cut(s) 337
AluBI AGCT 4 cut(s) 66, 116, 162, 427
AluI AGCT 4 cut(s) 66, 116, 162, 427
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 2 cut(s) 304, 332
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 189
ArsI GACNNNNNNTTYG 4 cut(s) 62, 94, 187, 219
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 304, 332
AsuHPI GGTGA 1 cut(s) 21
AsuII TTCGAA 1 cut(s) 101
AsuNHI GCTAGC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 304
BccI CCATC 2 cut(s) 28, 34
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BcuI ACTAGT 1 cut(s) 337
BfaI CTAG 3 cut(s) 287, 338, 362
BfmI CTRYAG 1 cut(s) 446
BglII AGATCT 1 cut(s) 140
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 304, 332
BmiI GGNNCC 1 cut(s) 305
BmsI GCATC 3 cut(s) 208, 273, 304
BmtI GCTAGC 1 cut(s) 290
Bpu14I TTCGAA 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 297
BseAI TCCGGA 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 223, 288
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 306, 334
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 2
BsnI GGCC 2 cut(s) 306, 334
Bsp119I TTCGAA 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 68
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 2 cut(s) 140, 171
BspACI CCGC 3 cut(s) 39, 81, 83
BspANI GGCC 2 cut(s) 306, 334
BspCNI CTCAG 1 cut(s) 102
BspEI TCCGGA 1 cut(s) 73
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 305
BspOI GCTAGC 1 cut(s) 290
BspPI GGATC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 140, 171
BssNI GRCGYC 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 94, 288
BstDEI CTNAG 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 223, 288
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 2 cut(s) 143, 174
BstMBI GATC 2 cut(s) 140, 171
BstMWI GCNNNNNNNGC 3 cut(s) 63, 89, 122
BstSFI CTRYAG 1 cut(s) 446
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuRI GGCC 2 cut(s) 306, 334
BtgI CCRYGG 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 223, 288
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 2 cut(s) 94, 288
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 304, 332
Cfr42I CCGCGG 1 cut(s) 84
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 10
CviJI RGCY 6 cut(s) 66, 116, 162, 306, 334, 427
CviKI_1 RGCY 6 cut(s) 66, 116, 162, 306, 334, 427
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 110
DpnI GATC 2 cut(s) 142, 173
DpnII GATC 2 cut(s) 140, 171
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 68
Eco32I GATATC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 37, 150
EcoICRI GAGCTC 1 cut(s) 66
EcoRV GATATC 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 68
FaiI YATR 7 cut(s) 185, 236, 312, 324, 329, 393, 404
FaqI GGGAC 1 cut(s) 2
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 2 cut(s) 230, 295
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 3 cut(s) 287, 338, 362
GlaI GCGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 318
HaeIII GGCC 2 cut(s) 306, 334
HapII CCGG 1 cut(s) 74
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 15
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 74, 109
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 294
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 209, 264, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 89, 122
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 15
HspAI GCGC 1 cut(s) 125
Kpn2I TCCGGA 1 cut(s) 73
KspI CCGCGG 1 cut(s) 84
Kzo9I GATC 2 cut(s) 140, 171
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 3 cut(s) 87, 122, 141
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 3 cut(s) 208, 273, 304
MaeI CTAG 3 cut(s) 287, 338, 362
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 142, 173
MboI GATC 2 cut(s) 140, 171
MboII GAAGA 1 cut(s) 143
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 3 cut(s) 97, 155, 189
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 3 cut(s) 38, 208, 240
MroI TCCGGA 1 cut(s) 73
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 3 cut(s) 63, 89, 122
NdeII GATC 2 cut(s) 140, 171
NheI GCTAGC 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 305
NspV TTCGAA 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 305
PspPI GGNCC 2 cut(s) 304, 332
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SacI GAGCTC 1 cut(s) 68
SacII CCGCGG 1 cut(s) 84
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 2 cut(s) 140, 171
Sau96I GGNCC 2 cut(s) 304, 332
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 68
SetI ASST 8 cut(s) 18, 49, 68, 118, 164, 256, 429, 447
SfaNI GCATC 3 cut(s) 208, 273, 304
SfcI CTRYAG 1 cut(s) 446
Sfr303I CCGCGG 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 101
SgrBI CCGCGG 1 cut(s) 84
SpeI ACTAGT 1 cut(s) 337
Sse9I AATT 3 cut(s) 97, 155, 189
SsiI CCGC 3 cut(s) 39, 81, 83
SspI AATATT 1 cut(s) 415
SspMI CTAG 3 cut(s) 287, 338, 362
SstI GAGCTC 1 cut(s) 68
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 18
TaqI TCGA 3 cut(s) 101, 151, 174
TasI AATT 3 cut(s) 97, 155, 189
TscAI CASTG 1 cut(s) 206
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 206
XapI RAATTY 1 cut(s) 189
XspI CTAG 3 cut(s) 287, 338, 362
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.