Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0019759

Physical Location & Seq

Genomic Coordinates Reverse (-)

49044074 .. 49050505

Gene Structure 6432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG388100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAATTATCGAGGGAACTTTATAGTAATAACATAACCGGTAATATTCCAACAGAGCTTGGCGGTTTGAACAACCTGGTGAGCTTGGATCTTTACTTGAACAATTTAGATGGCGAAATTCCACCGACACTTGGCAACCTTGAAAAGCTGCGTTTCCTGCGTCTCAACAACAATACCTTGACGGGGGAAATTCCCAGAACGCTGACTAATATTGAATCATTGCAAGTCCTGGATCTTTCAAACAACAATCTTACTGGAGATATTCCGATCAATGGTTCCTTTTCACTCTTTACTCCCATCAGTTTTGCCAATAATCCTCGTCTGAATAAACTTCCAGACGTTCCATCTCCTCCTGTTTCTCCAAGCCCAAGTCCTATTTCAGTAGTTTGTCAACCAACTCTTTATACAAGGCTCAGAGGGGTGAGAAGGGAACAAGGAAAAGAACAAACAAAAGGTAGAGACAGGGCAACTTATCCAGCAACCCAGTCGGAGACTCCCATGCCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

169

Amino Acids

18.67

Weight (kDa)

7.86

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	14 - 81	2.2e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019759)

Species	Orthologous Gene IDs
malus_domestica	MD15G1413600.v1.1
rosa_laevigata	RLG00000008560
rosa_multiflora	Rmu_sc0004200.1_g000022
rosa_samantha	Rh1CG014000 Rh2DG462300 Rh7AG369600 Rh7CG388100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	2 cut(s)	96, 240
AcsI	RAATTY	2 cut(s)	117, 189
AfiI	CCNNNNNNNGG	4 cut(s)	131, 183, 272, 504
AgeI	ACCGGT	1 cut(s)	38
AgsI	TTSAA	5 cut(s)	70, 100, 143, 215, 240
AjnI	CCWGG	2 cut(s)	75, 228
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AluBI	AGCT	3 cut(s)	58, 84, 148
AluI	AGCT	3 cut(s)	58, 84, 148
Alw26I	GTCTC	3 cut(s)	167, 453, 485
AlwI	GGATC	2 cut(s)	96, 240
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	2 cut(s)	117, 189
AsiGI	ACCGGT	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	91, 433
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	3 cut(s)	104, 305, 352
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	2 cut(s)	77, 230
BcoDI	GTCTC	3 cut(s)	167, 453, 485
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	2 cut(s)	77, 230
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	77, 230
BmrI	ACTGGG	1 cut(s)	478
BmuI	ACTGGG	1 cut(s)	478
BpmI	CTGGAG	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	503
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 183, 272, 504
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	259, 484
Bse3DI	GCAATG	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	77, 230
BseDI	CCNNGG	1 cut(s)	503
BseLI	CCNNNNNNNGG	4 cut(s)	131, 183, 272, 504
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	427
BseNI	ACTGG	2 cut(s)	259, 484
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	135
BshTI	ACCGGT	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	4 cut(s)	131, 183, 272, 504
BsmAI	GTCTC	3 cut(s)	167, 453, 485
BsmBI	CGTCTC	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	88, 232, 267
BspACI	CCGC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	96, 240
BsrDI	GCAATG	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	259, 484
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	503
BssMI	GATC	3 cut(s)	88, 232, 267
Bst2UI	CCWGG	2 cut(s)	77, 230
BstDEI	CTNAG	1 cut(s)	413
BstKTI	GATC	3 cut(s)	91, 235, 270
BstMAI	GTCTC	3 cut(s)	167, 453, 485
BstMBI	GATC	3 cut(s)	88, 232, 267
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	2 cut(s)	77, 230
BstSCI	CCNGG	2 cut(s)	75, 228
BstV1I	GCAGC	1 cut(s)	135
BstX2I	RGATCY	2 cut(s)	88, 232
BstYI	RGATCY	2 cut(s)	88, 232
Cfr10I	RCCGGY	1 cut(s)	38
CseI	GACGC	1 cut(s)	149
CsiI	ACCWGGT	1 cut(s)	75
CspAI	ACCGGT	1 cut(s)	38
CviAII	CATG	1 cut(s)	499
CviJI	RGCY	5 cut(s)	58, 84, 148, 366, 412
CviKI_1	RGCY	5 cut(s)	58, 84, 148, 366, 412
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	3 cut(s)	90, 234, 269
DpnII	GATC	3 cut(s)	88, 232, 267
EcoRII	CCWGG	2 cut(s)	75, 228
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	1 cut(s)	502
FaiI	YATR	4 cut(s)	24, 35, 405, 500
FatI	CATG	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	276
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	502
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HinfI	GANTC	2 cut(s)	215, 493
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	2 cut(s)	91, 433
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	4 cut(s)	267, 324, 416, 490
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	2 cut(s)	4, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	413
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	88, 232, 267
Lsp1109I	GCAGC	1 cut(s)	135
MabI	ACCWGGT	1 cut(s)	75
MaeII	ACGT	1 cut(s)	339
MalI	GATC	3 cut(s)	90, 234, 269
MboI	GATC	3 cut(s)	88, 232, 267
MflI	RGATCY	2 cut(s)	88, 232
MluCI	AATT	4 cut(s)	5, 103, 117, 189
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	2 cut(s)	74, 468
MnlI	CCTC	5 cut(s)	6, 327, 360, 410, 498
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	77, 230
MvaI	CCWGG	2 cut(s)	77, 230
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	3 cut(s)	88, 232, 267
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	228
PinAI	ACCGGT	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	150
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp6I	CCWGG	2 cut(s)	75, 228
PspGI	CCWGG	2 cut(s)	75, 228
PspN4I	GGNNCC	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	88, 232
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	3 cut(s)	88, 232, 267
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	2 cut(s)	77, 230
SetI	ASST	9 cut(s)	60, 78, 86, 141, 150, 179, 342, 457, 509
SexAI	ACCWGGT	1 cut(s)	75
Sse9I	AATT	4 cut(s)	5, 103, 117, 189
SsiI	CCGC	1 cut(s)	63
SspI	AATATT	2 cut(s)	46, 211
StyD4I	CCNGG	2 cut(s)	75, 228
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	11
TasI	AATT	4 cut(s)	5, 103, 117, 189
TfiI	GAWTC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	148
XapI	RAATTY	2 cut(s)	117, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.