Rh7AG369600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019759
Physical Location & Seq
Reverse (-)
47633858 .. 47639186
5329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG369600.1

Sequence Viewer

Length: 276 bp
ATGGGATGGAAGCAAAGTCATTATACTGTAGGATTATGGGAAGCAACTAGCATTGGGGAACTTTATAGTAATAACATAACCGGTAATATTCCAACAGAGCTTGGCGGTTTGAACAACCTGGTGAGCTTGGATCTTTACTTGAACAATTTAGATGGCGAAATTCCACCGACACTTGGCAACCTTGAAAAGCTGCGTTTCCTGCGTCTCAACAACAATACCTTGACGGGGGAAATTCCCAGAACGCTGACTAATATTGAATCATTGCAAGTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.11

Weight (kDa)

4.68

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 28 - 91 5e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019759)

Species Orthologous Gene IDs
malus_domestica MD15G1413600.v1.1
rosa_laevigata RLG00000008560
rosa_multiflora Rmu_sc0004200.1_g000022
rosa_samantha Rh1CG014000 Rh2DG462300 Rh7AG369600 Rh7CG388100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 2 cut(s) 159, 231
AfiI CCNNNNNNNGG 2 cut(s) 173, 225
AgeI ACCGGT 1 cut(s) 80
AgsI TTSAA 4 cut(s) 112, 142, 185, 257
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 3 cut(s) 100, 126, 190
AluI AGCT 3 cut(s) 100, 126, 190
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 2 cut(s) 159, 231
AsiGI ACCGGT 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 133
BbvI GCAGC 1 cut(s) 177
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 225
Bse118I RCCGGY 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 11
BseLI CCNNNNNNNGG 2 cut(s) 173, 225
BseMI GCAATG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 177
BshTI ACCGGT 1 cut(s) 80
BsiSI CCGG 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 173, 225
BsmAI GTCTC 1 cut(s) 209
BsmBI CGTCTC 1 cut(s) 209
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 28
BstF5I GGATG 1 cut(s) 11
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BtsCI GGATG 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 80
CseI GACGC 1 cut(s) 191
CsiI ACCWGGT 1 cut(s) 117
CspAI ACCGGT 1 cut(s) 80
CviJI RGCY 3 cut(s) 100, 126, 190
CviKI_1 RGCY 3 cut(s) 100, 126, 190
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 209
FaiI YATR 4 cut(s) 24, 37, 66, 77
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 191
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 191
HinfI GANTC 1 cut(s) 257
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 5 cut(s) 94, 104, 131, 212, 250
Lsp1109I GCAGC 1 cut(s) 177
MabI ACCWGGT 1 cut(s) 117
MaeI CTAG 1 cut(s) 48
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MflI RGATCY 1 cut(s) 130
MluCI AATT 3 cut(s) 145, 159, 231
MmeI TCCRAC 1 cut(s) 116
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 257
PinAI ACCGGT 1 cut(s) 80
PkrI GCNGC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PsuI RGATCY 1 cut(s) 130
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 119
SetI ASST 6 cut(s) 102, 120, 128, 183, 192, 221
SexAI ACCWGGT 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 27
Sse9I AATT 3 cut(s) 145, 159, 231
SsiI CCGC 1 cut(s) 105
SspI AATATT 2 cut(s) 88, 253
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 28
TasI AATT 3 cut(s) 145, 159, 231
TfiI GAWTC 1 cut(s) 257
TseI GCWGC 1 cut(s) 190
XapI RAATTY 2 cut(s) 159, 231
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.