Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004200.1

Orthogroup ID

OG0019759

Physical Location & Seq

Genomic Coordinates Reverse (-)

93517 .. 96264

Gene Structure 2748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004200.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggaactccaacggcaagaggctttaaggaagacacatagagttagtttggcaatggaccccacagtgaagattcgtagttcactggtatataaagttcatatgattgcaacacttgatgcaaggcgtctcaacaacaataccttgaggggggaaattcccagatcactgactaagattgcatcattgcaagtcctggatctttcaaacaacaatctgactggagatattccggtcaatggttccttttcactctttactcccatcagttttcaaaataatcctaatctgaatgaacctccagtcactccaactcctcctgtttctccaagcccaagtcctatttcaggagatactgttgctttatgtacaatctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

13.76

Weight (kDa)

9.51

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019759)

Species	Orthologous Gene IDs
malus_domestica	MD15G1413600.v1.1
rosa_laevigata	RLG00000008560
rosa_multiflora	Rmu_sc0004200.1_g000022
rosa_samantha	Rh1CG014000 Rh2DG462300 Rh7AG369600 Rh7CG388100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	127
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	3 cut(s)	150, 239, 347
AgsI	TTSAA	2 cut(s)	207, 275
AjnI	CCWGG	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	38
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	60, 244
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	2 cut(s)	109, 191
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	2 cut(s)	243, 285
BpuEI	CTTGAG	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	4 cut(s)	298, 328, 342, 372
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 239, 347
Bse1I	ACTGG	3 cut(s)	90, 226, 302
Bse3DI	GCAATG	2 cut(s)	60, 185
BseBI	CCWGG	1 cut(s)	197
BseLI	CCNNNNNNNGG	3 cut(s)	150, 239, 347
BseMI	GCAATG	2 cut(s)	60, 185
BseNI	ACTGG	3 cut(s)	90, 226, 302
BseRI	GAGGAG	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	3 cut(s)	150, 239, 347
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
Bsp1407I	TGTACA	1 cut(s)	368
Bsp143I	GATC	2 cut(s)	164, 199
BspLI	GGNNCC	2 cut(s)	60, 244
BspPI	GGATC	1 cut(s)	207
BsrDI	GCAATG	2 cut(s)	60, 185
BsrGI	TGTACA	1 cut(s)	368
BsrI	ACTGG	3 cut(s)	90, 226, 302
BssMI	GATC	2 cut(s)	164, 199
BssNI	GRCGYC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	67, 358
BstACI	GRCGYC	1 cut(s)	127
BstAUI	TGTACA	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	345
BstKTI	GATC	2 cut(s)	167, 202
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	164, 199
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BtsIMutI	CAGTG	3 cut(s)	72, 83, 167
Cfr13I	GGNCC	1 cut(s)	58
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	369
CviJI	RGCY	2 cut(s)	23, 333
CviKI_1	RGCY	2 cut(s)	23, 333
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	166, 201
DpnII	GATC	2 cut(s)	164, 199
Eco47I	GGWCC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	134
FaiI	YATR	6 cut(s)	39, 91, 93, 102, 104, 367
FauNDI	CATATG	1 cut(s)	102
GsuI	CTGGAG	2 cut(s)	243, 285
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	219, 291
Hpy188III	TCNNGA	2 cut(s)	348, 378
Hpy8I	GTNNAC	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	67, 358
HpyCH4V	TGCA	4 cut(s)	110, 122, 182, 190
HpyF3I	CTNAG	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	164, 199
LpnPI	CCDG	9 cut(s)	71, 175, 182, 207, 209, 246, 315, 333, 333
LweI	GCATC	2 cut(s)	109, 191
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	166, 201
MboI	GATC	2 cut(s)	164, 199
MboII	GAAGA	2 cut(s)	43, 82
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	1 cut(s)	156
MmeI	TCCRAC	2 cut(s)	34, 335
MnlI	CCTC	4 cut(s)	13, 141, 309, 327
MseI	TTAA	1 cut(s)	26
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
NdeI	CATATG	1 cut(s)	102
NdeII	GATC	2 cut(s)	164, 199
NlaIV	GGNNCC	2 cut(s)	60, 244
NmuCI	GTSAC	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	73
PfoI	TCCNGGA	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	60, 244
PspPI	GGNCC	1 cut(s)	58
PsrI	GAACNNNNNNTAC	2 cut(s)	81, 113
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	164, 199
Sau96I	GGNCC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	2 cut(s)	146, 301
SfaNI	GCATC	2 cut(s)	109, 191
SinI	GGWCC	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	67, 358
TasI	AATT	1 cut(s)	156
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	3 cut(s)	72, 90, 174
TseFI	GTSAC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	89, 309
TspRI	CASTG	3 cut(s)	72, 90, 174
VpaK11BI	GGWCC	1 cut(s)	58
XagI	CCTNNNNNAGG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.