Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012573

Physical Location & Seq

Genomic Coordinates Forward (+)

2737908 .. 2738325

Gene Structure 418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1038500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTCGTCGCCGTCGCCACAACTTTTGAATACCTCGGCGCCGTCGTTGCTGGAGCTGGAAGTGGTGGAGTTAGAGTGGTGGCTTGAGGGAACTTGCGGGTGTGATAAGAACGCCTATTGTACGACGGTCGTATCGCCAAATGGGACAGAAGGGTATAGATGCAACTGCAAGGAGGGTTTTGGTGGAGATGGATACGTTGCTGGGTTAGGCTGCAGGAAAGGCATAGAGAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

79

Amino Acids

8.35

Weight (kDa)

4.57

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03470 FvH4_2g40520 FvH4_2g40520
malus_domestica	MD00G1038300.v1.1 MD08G1038900.v1.1 MD16G1038500.v1.1
prunus_persica	Prupe.1G386400_v2.0.a1
pyrus_communis	pycom08g03060
rosa_chinensis	RchiOBHm_Chr6g0300211
rosa_laevigata	RLG00000011357
rosa_multiflora	Rmu_sc0001670.1_g000034
rosa_roxburghii	Rroxscaffold_7G00168010
rosa_rugosa	Rorug05G0186800 Rorug06G0294100
rosa_samantha	Rh6AG406300 Rh6BG414200 Rh6CG421400 Rh6DG407000
rosa_wichuraiana	Rw6G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	40
BaeI	ACNNNNGTAYC	2 cut(s)	114, 147
BanI	GGYRCC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	25
BciVI	GTATCC	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
BseDI	CCNNGG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	37
BsiEI	CGRYCG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	33
BssNI	GRCGYC	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	127
BstACI	GRCGYC	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 219
BstSFI	CTRYAG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	120
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviJI	RGCY	3 cut(s)	55, 82, 210
CviKI_1	RGCY	3 cut(s)	55, 82, 210
CviQI	GTAC	1 cut(s)	120
DinI	GGCGCC	1 cut(s)	39
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
FaiI	YATR	2 cut(s)	156, 224
FaqI	GGGAC	1 cut(s)	157
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	211
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	211
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	41
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
Hpy99I	CGWCG	4 cut(s)	10, 16, 46, 127
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	162, 168, 213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 219
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	38
HspAI	GCGC	1 cut(s)	38
KasI	GGCGCC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	4 cut(s)	35, 41, 186, 199
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	149
MaeII	ACGT	1 cut(s)	195
Mly113I	GGCGCC	1 cut(s)	38
MnlI	CCTC	3 cut(s)	43, 79, 166
MseI	TTAA	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	46, 219
NarI	GGCGCC	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	212
PluTI	GGCGCC	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	235
SatI	GCNGC	1 cut(s)	211
SetI	ASST	3 cut(s)	35, 57, 198
SfaNI	GCATC	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	211
SfoI	GGCGCC	1 cut(s)	39
SgeI	CNNG	9 cut(s)	46, 62, 68, 95, 105, 109, 181, 213, 226
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SsiI	CCGC	1 cut(s)	96
SspDI	GGCGCC	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	235
Tru9I	TTAA	1 cut(s)	235
TseI	GCWGC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.